Wall clock time and date at job start Wed Apr 1 2020 00:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46912 * 2 1 4 4 N 1.46495 * 109.47327 * 240.00178 * 2 1 3 5 5 C 1.34778 * 120.00089 * 84.99489 * 4 2 1 6 6 O 1.21613 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.47319 * 119.99947 * 179.97438 * 5 4 2 8 8 C 1.37918 * 126.80762 * 0.18074 * 7 5 4 9 9 N 1.34187 * 107.89531 * 180.27939 * 8 7 5 10 10 H 0.96995 * 125.17071 * 179.72233 * 9 8 7 11 11 N 1.39782 * 109.66677 * 359.71418 * 9 8 7 12 12 C 1.31374 * 109.06685 * 0.02562 * 11 9 8 13 13 C 1.48272 * 126.50913 * 180.02562 * 12 11 9 14 14 C 1.39809 * 120.91059 * 144.99596 * 13 12 11 15 15 C 1.37969 * 119.01572 * 180.02562 * 14 13 12 16 16 N 1.31928 * 120.88018 * 359.97438 * 15 14 13 17 17 C 1.31925 * 122.02465 * 0.02562 * 16 15 14 18 18 C 1.37977 * 120.88036 * 0.02562 * 17 16 15 19 19 C 1.52998 * 109.47129 * 119.99856 * 2 1 3 20 20 C 1.53949 * 113.74319 * 281.82509 * 19 2 1 21 21 N 1.47810 * 86.03602 * 222.08660 * 20 19 2 22 22 C 1.36941 * 134.45536 * 204.64617 * 21 20 19 23 23 H 1.07997 * 119.99964 * 179.86681 * 22 21 20 24 24 C 1.38813 * 119.99861 * 359.86394 * 22 21 20 25 25 N 1.31612 * 119.99920 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47319 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47395 * 120.00330 * 26 24 22 29 29 H 1.48500 * 109.46832 * 239.99671 * 26 24 22 30 30 C 1.47579 * 91.05637 * 24.55047 * 21 20 19 31 31 H 1.08996 * 109.47319 * 300.06769 * 1 2 3 32 32 H 1.08997 * 109.47093 * 60.06817 * 1 2 3 33 33 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 34 34 H 0.96996 * 119.99880 * 264.99468 * 4 2 1 35 35 H 1.08002 * 126.05305 * 359.96944 * 8 7 5 36 36 H 1.07994 * 120.49110 * 359.97438 * 14 13 12 37 37 H 1.08000 * 119.55704 * 180.28066 * 15 14 13 38 38 H 1.07992 * 119.56406 * 180.02562 * 17 16 15 39 39 H 1.07998 * 120.49053 * 180.02562 * 18 17 16 40 40 H 1.09001 * 112.94779 * 53.41871 * 19 2 1 41 41 H 1.09002 * 113.76831 * 336.34903 * 20 19 2 42 42 H 1.09000 * 113.76803 * 107.74656 * 20 19 2 43 43 H 0.97003 * 120.00022 * 179.97438 * 25 24 22 44 44 H 1.09002 * 113.77363 * 221.15632 * 30 21 20 45 45 H 1.08997 * 113.87297 * 89.76153 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1619 -2.4117 7 6 2.6387 -0.7125 -3.5598 8 6 3.0022 -2.0393 -3.6574 9 7 3.3971 -2.2669 -4.9195 10 1 3.7094 -3.1189 -5.2621 11 7 3.2899 -1.0897 -5.6655 12 6 2.8354 -0.1307 -4.8910 13 6 2.5755 1.2743 -5.2869 14 6 1.5091 1.9905 -4.7350 15 6 1.3028 3.2957 -5.1319 16 7 2.0956 3.8673 -6.0180 17 6 3.1124 3.2271 -6.5628 18 6 3.3896 1.9188 -6.2232 19 6 2.0400 -0.7212 1.2492 20 6 1.9743 0.1330 2.5283 21 7 3.3098 -0.4177 2.8417 22 6 4.0194 -0.6143 3.9963 23 1 5.0066 -1.0502 3.9558 24 6 3.4697 -0.2531 5.2187 25 7 2.2664 0.2778 5.2680 26 14 4.4380 -0.5205 6.7936 27 1 5.7534 -1.1283 6.4688 28 1 4.6487 0.7832 7.4727 29 1 3.6813 -1.4296 7.6915 30 6 3.5702 -0.6728 1.4116 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6316 -1.1526 35 1 2.9785 -2.7653 -2.8581 36 1 0.8560 1.5286 -4.0095 37 1 0.4844 3.8584 -4.7078 38 1 3.7363 3.7338 -7.2841 39 1 4.2239 1.4010 -6.6727 40 1 1.6177 -1.7193 1.3659 41 1 1.9750 1.2066 2.3401 42 1 1.1953 -0.1777 3.2245 43 1 1.8822 0.5299 6.1223 44 1 4.0629 -1.6256 1.2178 45 1 4.0407 0.1625 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970048562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:12 Heat of formation + Delta-G solvation = 106.555370 kcal Electronic energy + Delta-G solvation = -28788.591713 eV Core-core repulsion = 24808.592707 eV Total energy + Delta-G solvation = -3979.999006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.28875 -40.72908 -40.64448 -39.36367 -36.12669 -34.62848 -34.11765 -32.52634 -32.14014 -31.54913 -30.53412 -29.26353 -26.55953 -25.74995 -25.32619 -24.55053 -24.14608 -22.56412 -21.46869 -21.17270 -20.54537 -19.37527 -18.72183 -17.65543 -17.43930 -17.10488 -17.00874 -16.79264 -16.69883 -16.05835 -15.79693 -15.43360 -15.19771 -15.02947 -14.87063 -14.66281 -14.52173 -14.43304 -13.97576 -13.71442 -13.32390 -13.21969 -13.03767 -12.93322 -12.67523 -12.65967 -12.31940 -12.12534 -11.95210 -11.76556 -11.53094 -11.49926 -11.16762 -10.86127 -10.84986 -10.43426 -10.21364 -10.03172 -9.91013 -9.64452 -8.89463 -7.89253 -5.22216 -0.15781 0.28594 0.54827 1.22682 1.45950 1.47207 1.57022 1.69776 2.27244 2.46973 2.48383 2.93452 3.18565 3.31641 3.43242 3.54856 3.62044 3.76941 4.00971 4.04289 4.14688 4.17356 4.24877 4.33556 4.38502 4.41896 4.55201 4.64970 4.72493 4.82239 4.82882 4.91463 4.92921 4.98624 5.03136 5.17987 5.24065 5.28925 5.35575 5.39199 5.57565 5.64842 5.71559 5.78450 5.96653 6.19632 6.37128 6.77301 6.94064 7.03977 7.43726 7.62820 8.58774 9.27871 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.002393 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.653440 B =11698.438224 C =12350.633819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 H 0.059 0.941 4 N -0.702 5.702 5 C 0.589 3.411 6 O -0.572 6.572 7 C -0.306 4.306 8 C 0.145 3.855 9 N -0.443 5.443 10 H 0.464 0.536 11 N -0.295 5.295 12 C 0.147 3.853 13 C 0.001 3.999 14 C -0.113 4.113 15 C 0.079 3.921 16 N -0.501 5.501 17 C 0.082 3.918 18 C -0.146 4.146 19 C -0.106 4.106 20 C 0.169 3.831 21 N -0.645 5.645 22 C -0.233 4.233 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.976 3.024 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.290 1.290 30 C 0.128 3.872 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.241 0.759 36 H 0.147 0.853 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.008 0.992 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.065 0.935 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -8.144 -24.717 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.061 3.939 3 H 0.077 0.923 4 N -0.353 5.353 5 C 0.378 3.622 6 O -0.453 6.453 7 C -0.321 4.321 8 C -0.007 4.007 9 N -0.151 5.151 10 H 0.313 0.687 11 N -0.117 5.117 12 C -0.021 4.021 13 C -0.010 4.010 14 C -0.134 4.134 15 C -0.077 4.077 16 N -0.211 5.211 17 C -0.074 4.074 18 C -0.167 4.167 19 C -0.125 4.125 20 C 0.043 3.957 21 N -0.371 5.371 22 C -0.362 4.362 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.217 1.217 30 C 0.003 3.997 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.249 0.751 35 H 0.257 0.743 36 H 0.165 0.835 37 H 0.188 0.812 38 H 0.202 0.798 39 H 0.168 0.832 40 H 0.127 0.873 41 H 0.026 0.974 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.680 -6.814 -25.834 26.726 hybrid contribution 0.628 -1.055 2.257 2.569 sum -0.052 -7.869 -23.576 24.855 Atomic orbital electron populations 1.22036 0.94143 1.02949 1.01791 1.20685 0.94560 0.95843 0.82798 0.92277 1.45658 1.66973 1.14358 1.08268 1.17392 0.76531 0.85844 0.82450 1.90738 1.52719 1.16955 1.84933 1.21256 1.21529 0.95076 0.94266 1.23723 0.91491 0.96118 0.89325 1.46021 1.50460 1.11346 1.07262 0.68720 1.77286 1.23366 0.92203 1.18821 1.21707 0.96809 0.92662 0.90935 1.18248 0.96126 0.89940 0.96652 1.22555 0.97659 0.95704 0.97459 1.22949 0.98441 0.92589 0.93698 1.67630 1.05143 1.39047 1.09279 1.23097 0.94372 0.91629 0.98341 1.22373 1.00486 0.96524 0.97286 1.23434 0.95795 1.00388 0.92912 1.22143 0.88154 0.93675 0.91768 1.46457 1.17342 1.72066 1.01273 1.19462 0.98727 1.33767 0.84203 0.89902 1.25617 0.98166 1.01735 1.00659 1.70001 1.16867 1.48854 1.24485 0.85037 0.78181 0.76794 0.79485 1.18925 1.22349 1.21651 1.22681 0.94985 0.98448 0.83585 0.92279 0.92703 0.90686 0.75122 0.74339 0.83519 0.81226 0.79842 0.83172 0.87318 0.97382 0.93600 0.94301 0.91676 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.44 71.98 0.68 -3.04 16 2 C 0.17 4.55 2.29 44.99 0.10 4.65 16 3 H 0.06 2.02 7.48 -2.39 -0.02 2.00 16 4 N -0.70 -14.37 4.94 -445.92 -2.20 -16.57 16 5 C 0.59 14.35 7.68 86.63 0.67 15.02 16 6 O -0.57 -18.23 12.15 -4.07 -0.05 -18.28 16 7 C -0.31 -5.96 6.28 -18.78 -0.12 -6.08 16 8 C 0.15 1.35 11.50 84.26 0.97 2.32 16 9 N -0.44 -4.30 7.20 -56.44 -0.41 -4.70 16 10 H 0.46 0.75 8.96 -213.53 -1.91 -1.16 16 11 N -0.29 -5.59 12.65 -44.53 -0.56 -6.15 16 12 C 0.15 3.33 6.98 44.07 0.31 3.64 16 13 C 0.00 0.01 5.75 -19.85 -0.11 -0.10 16 14 C -0.11 -2.94 7.89 22.59 0.18 -2.76 16 15 C 0.08 1.97 11.17 84.61 0.95 2.92 16 16 N -0.50 -12.72 10.35 -196.14 -2.03 -14.75 16 17 C 0.08 1.73 11.17 84.62 0.95 2.67 16 18 C -0.15 -3.12 9.88 22.59 0.22 -2.90 16 19 C -0.11 -3.39 3.35 -10.13 -0.03 -3.42 16 20 C 0.17 7.75 6.98 86.44 0.60 8.36 16 21 N -0.64 -32.35 3.70 -716.09 -2.65 -35.00 16 22 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 24 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 25 N -0.95 -57.36 11.39 21.65 0.25 -57.11 16 26 Si 0.98 45.51 29.55 68.60 2.03 47.53 16 27 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 30 C 0.13 4.73 8.38 86.49 0.72 5.46 16 31 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.41 5.32 7.56 -92.71 -0.70 4.61 16 35 H 0.24 -0.29 7.48 -2.91 -0.02 -0.31 16 36 H 0.15 4.03 5.77 -2.91 -0.02 4.02 16 37 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 42 H 0.05 2.36 7.16 -2.39 -0.02 2.34 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 Total: -1.00 -81.51 379.71 0.25 -81.26 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -1.57 Total: 12.55 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.44 Total: 11.23 kcal Atomic # 7 Polarization: -126.68 SS G_CDS: -7.61 Total: -134.29 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.51 0.25 -81.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970048562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.814 kcal (2) G-P(sol) polarization free energy of solvation -81.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds