Wall clock time and date at job start Wed Apr 1 2020 00:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21579 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.47663 * 120.00056 * 180.02562 * 5 4 2 8 8 C 1.40235 * 120.49515 * 179.72064 * 7 5 4 9 9 C 1.38018 * 118.35467 * 179.72870 * 8 7 5 10 10 C 1.39158 * 119.25607 * 0.51927 * 9 8 7 11 11 N 1.39499 * 119.52683 * 179.71923 * 10 9 8 12 12 C 1.37229 * 126.49201 * 184.73573 * 11 10 9 13 13 C 1.34590 * 106.82012 * 179.87707 * 12 11 10 14 14 N 1.34169 * 108.23613 * 0.38973 * 13 12 11 15 15 C 1.30459 * 109.38816 * 359.74732 * 14 13 12 16 16 N 1.32434 * 120.93992 * 359.74156 * 10 9 8 17 17 C 1.31631 * 121.80504 * 0.02562 * 16 10 9 18 18 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 19 19 C 1.53496 * 114.20179 * 60.00300 * 18 2 1 20 20 N 1.47070 * 87.98352 * 87.52002 * 19 18 2 21 21 C 1.36935 * 136.05550 * 207.07944 * 20 19 18 22 22 H 1.08005 * 120.00172 * 6.50069 * 21 20 19 23 23 C 1.38815 * 119.99990 * 186.49806 * 21 20 19 24 24 N 1.31619 * 119.99663 * 6.42579 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 186.42252 * 23 21 20 26 26 H 1.48495 * 109.47340 * 265.02201 * 25 23 21 27 27 H 1.48498 * 109.46951 * 25.02385 * 25 23 21 28 28 H 1.48498 * 109.46744 * 145.01993 * 25 23 21 29 29 C 1.47064 * 87.88277 * 27.34197 * 20 19 18 30 30 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 32 32 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 33 33 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 34 34 H 1.08002 * 120.82293 * 359.97016 * 8 7 5 35 35 H 1.08000 * 120.37315 * 180.26076 * 9 8 7 36 36 H 1.07995 * 126.58972 * 359.97438 * 12 11 10 37 37 H 1.08005 * 125.87907 * 180.10494 * 13 12 11 38 38 H 1.07996 * 125.72519 * 179.97438 * 15 14 13 39 39 H 1.08000 * 119.68236 * 179.97438 * 17 16 10 40 40 H 1.08996 * 113.41116 * 286.80792 * 18 2 1 41 41 H 1.09004 * 113.46865 * 332.74440 * 19 18 2 42 42 H 1.08993 * 113.51976 * 202.30849 * 19 18 2 43 43 H 0.97005 * 119.99413 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.46743 * 87.44096 * 29 20 19 45 45 H 1.08999 * 113.46191 * 217.87327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1615 2.4117 7 6 2.6396 -0.7142 3.5628 8 6 2.7829 -0.0234 4.7747 9 6 3.2418 -0.7186 5.8752 10 6 3.5550 -2.0682 5.7450 11 7 4.0248 -2.7748 6.8522 12 6 4.4598 -4.0763 6.8652 13 6 4.8234 -4.3527 8.1312 14 7 4.6108 -3.2583 8.8776 15 6 4.1329 -2.3064 8.1243 16 7 3.4138 -2.6911 4.5849 17 6 2.9753 -2.0677 3.5116 18 6 2.0401 -0.7213 -1.2492 19 6 1.5899 -0.0847 -2.5714 20 7 2.7724 0.7863 -2.4944 21 6 3.1106 2.0322 -2.9510 22 1 2.3680 2.6506 -3.4334 23 6 4.4080 2.5005 -2.7940 24 7 5.3428 1.7030 -2.3223 25 14 4.8269 4.2623 -3.2520 26 1 5.3584 4.3005 -4.6381 27 1 3.6036 5.0999 -3.1677 28 1 5.8517 4.7872 -2.3142 29 6 3.4341 -0.2723 -1.7170 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6318 1.1527 34 1 2.5366 1.0258 4.8461 35 1 3.3604 -0.2197 6.8257 36 1 4.5037 -4.7488 6.0214 37 1 5.2143 -5.2949 8.4862 38 1 3.8673 -1.3134 8.4555 39 1 2.8737 -2.6092 2.5827 40 1 1.9118 -1.8029 -1.2074 41 1 0.6467 0.4561 -2.4938 42 1 1.6124 -0.7736 -3.4157 43 1 6.2494 2.0301 -2.2129 44 1 3.9433 -1.0113 -2.3356 45 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970239511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:38 Heat of formation + Delta-G solvation = 115.464079 kcal Electronic energy + Delta-G solvation = -28460.428858 eV Core-core repulsion = 24480.816163 eV Total energy + Delta-G solvation = -3979.612695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.43338 -41.73360 -40.66949 -39.62751 -36.19771 -35.41624 -34.23200 -33.86931 -32.34720 -30.92540 -30.23483 -29.46282 -26.66725 -25.94547 -25.51022 -25.07010 -23.58396 -22.53543 -22.00594 -21.50128 -20.61769 -19.93093 -18.86555 -18.46016 -17.96355 -17.11563 -16.89742 -16.85741 -16.38707 -16.15177 -15.92416 -15.73617 -15.20217 -14.96262 -14.88208 -14.76694 -14.63476 -14.50010 -14.36395 -14.24927 -13.80537 -13.48616 -13.30100 -13.18193 -12.81996 -12.53651 -12.36761 -12.04608 -11.89830 -11.77415 -11.52660 -11.39475 -11.27549 -11.20628 -11.00829 -10.86690 -10.76451 -10.18144 -9.91211 -9.55941 -8.89562 -7.93706 -5.22930 -0.84608 -0.04744 0.94314 1.29961 1.41723 1.43783 1.52413 1.80885 2.03426 2.05823 2.46239 2.65504 2.99799 3.30736 3.36981 3.48452 3.54492 3.61357 3.63218 3.71402 3.84996 3.90276 4.04965 4.35839 4.41136 4.44018 4.51421 4.52309 4.70735 4.72844 4.78786 4.81530 4.85697 4.89807 5.03137 5.05871 5.13385 5.19305 5.25497 5.33550 5.46846 5.51866 5.61932 5.70315 5.93684 5.99304 6.46358 6.51854 6.88519 6.91117 7.17407 7.60812 8.62313 9.25247 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.002281 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.046301 B =12274.275769 C =12838.278685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.700 5.700 5 C 0.561 3.439 6 O -0.576 6.576 7 C -0.202 4.202 8 C 0.007 3.993 9 C -0.174 4.174 10 C 0.355 3.645 11 N -0.419 5.419 12 C -0.036 4.036 13 C -0.039 4.039 14 N -0.511 5.511 15 C 0.199 3.801 16 N -0.513 5.513 17 C 0.178 3.822 18 C -0.120 4.120 19 C 0.124 3.876 20 N -0.642 5.642 21 C -0.222 4.222 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.952 5.952 25 Si 0.971 3.029 26 H -0.285 1.285 27 H -0.268 1.268 28 H -0.297 1.297 29 C 0.162 3.838 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.193 0.807 37 H 0.195 0.805 38 H 0.248 0.752 39 H 0.197 0.803 40 H 0.123 0.877 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.246 0.754 44 H 0.020 0.980 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.938 -13.173 17.825 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.065 0.935 4 N -0.351 5.351 5 C 0.348 3.652 6 O -0.457 6.457 7 C -0.208 4.208 8 C -0.020 4.020 9 C -0.195 4.195 10 C 0.127 3.873 11 N -0.102 5.102 12 C -0.165 4.165 13 C -0.182 4.182 14 N -0.228 5.228 15 C -0.083 4.083 16 N -0.225 5.225 17 C 0.018 3.982 18 C -0.139 4.139 19 C -0.001 4.001 20 N -0.369 5.369 21 C -0.351 4.351 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.800 3.200 26 H -0.212 1.212 27 H -0.193 1.193 28 H -0.224 1.224 29 C 0.036 3.964 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.180 0.820 35 H 0.202 0.798 36 H 0.210 0.790 37 H 0.212 0.788 38 H 0.263 0.737 39 H 0.213 0.787 40 H 0.141 0.859 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.596 -12.903 18.521 23.816 hybrid contribution 0.689 1.406 -1.518 2.181 sum -6.908 -11.496 17.002 21.656 Atomic orbital electron populations 1.22033 0.93212 1.03428 1.01879 1.20372 0.94684 0.95496 0.82238 0.93544 1.45807 1.66133 1.14468 1.08711 1.18227 0.77315 0.86023 0.83618 1.90799 1.52123 1.17211 1.85546 1.20964 1.07953 0.96517 0.95324 1.21791 0.89147 1.01383 0.89649 1.21801 1.03536 0.91796 1.02413 1.18615 0.93366 0.89082 0.86238 1.43271 1.47529 1.11810 1.07568 1.23257 1.05537 0.86043 1.01617 1.22820 1.06166 0.99221 0.90016 1.70355 1.17676 1.01325 1.33435 1.26151 1.02195 1.02115 0.77794 1.67027 1.17124 1.39675 0.98661 1.23109 0.88862 0.90011 0.96168 1.23101 0.96910 1.00303 0.93599 1.22643 0.91362 0.91575 0.94570 1.46097 1.14969 1.12897 1.62919 1.19305 0.94347 0.89930 1.31508 0.89907 1.25594 0.95651 1.02075 1.02920 1.70013 1.01290 1.35856 1.53007 0.85156 0.77664 0.80091 0.77085 1.21161 1.19285 1.22428 1.22032 0.93341 0.88335 0.92713 0.89522 0.93581 0.91390 0.74850 0.82031 0.79790 0.78987 0.78795 0.73655 0.78676 0.85921 0.92395 0.93042 0.94567 0.96189 0.95986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.29 71.98 0.67 -3.03 16 2 C 0.18 5.49 2.43 44.99 0.11 5.60 16 3 H 0.05 2.03 7.36 -2.39 -0.02 2.02 16 4 N -0.70 -17.42 5.03 -445.57 -2.24 -19.67 16 5 C 0.56 15.91 7.74 86.73 0.67 16.58 16 6 O -0.58 -21.74 16.08 -3.96 -0.06 -21.80 16 7 C -0.20 -4.24 5.89 -19.99 -0.12 -4.36 16 8 C 0.01 0.12 9.70 22.70 0.22 0.34 16 9 C -0.17 -2.40 9.48 22.44 0.21 -2.19 16 10 C 0.35 6.18 7.49 132.89 1.00 7.18 16 11 N -0.42 -7.14 2.98 -355.79 -1.06 -8.20 16 12 C -0.04 -0.61 11.16 83.01 0.93 0.32 16 13 C -0.04 -0.67 11.85 83.50 0.99 0.32 16 14 N -0.51 -10.09 11.24 -199.65 -2.24 -12.34 16 15 C 0.20 2.99 11.88 179.97 2.14 5.13 16 16 N -0.51 -9.60 9.87 -191.85 -1.89 -11.49 16 17 C 0.18 3.04 10.71 85.04 0.91 3.95 16 18 C -0.12 -3.70 3.73 -10.37 -0.04 -3.74 16 19 C 0.12 4.49 8.08 83.17 0.67 5.16 16 20 N -0.64 -32.14 3.57 -738.00 -2.63 -34.77 16 21 C -0.22 -12.57 10.73 84.03 0.90 -11.67 16 22 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.95 -58.66 11.81 21.65 0.26 -58.40 16 25 Si 0.97 47.01 29.56 68.60 2.03 49.03 16 26 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 29 C 0.16 7.25 6.77 83.26 0.56 7.81 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.75 6.50 -2.38 -0.02 1.73 16 33 H 0.41 6.91 6.66 -92.71 -0.62 6.29 16 34 H 0.16 2.86 7.73 -2.91 -0.02 2.84 16 35 H 0.18 1.13 6.75 -2.91 -0.02 1.11 16 36 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.25 1.49 7.05 -2.91 -0.02 1.47 16 39 H 0.20 2.11 6.41 -2.91 -0.02 2.09 16 40 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.06 1.95 6.43 -2.38 -0.02 1.94 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.02 1.14 7.56 -2.39 -0.02 1.12 16 Total: -1.00 -82.78 379.29 2.86 -79.92 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.42 Total: 13.89 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 10.29 Total: 23.83 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -9.81 Total: -144.86 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.80 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -82.78 2.86 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970239511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.384 kcal (2) G-P(sol) polarization free energy of solvation -82.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds