Wall clock time and date at job start Wed Apr 1 2020 00:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47529 * 2 1 4 4 N 1.46501 * 109.46740 * 119.99910 * 2 1 3 5 5 C 1.34771 * 120.00266 * 274.99696 * 4 2 1 6 6 O 1.21581 * 119.99752 * 0.02562 * 5 4 2 7 7 C 1.47670 * 120.00387 * 180.02562 * 5 4 2 8 8 C 1.40227 * 120.49366 * 180.02562 * 7 5 4 9 9 C 1.38034 * 118.34930 * 179.97438 * 8 7 5 10 10 C 1.39154 * 119.26051 * 359.97438 * 9 8 7 11 11 N 1.39485 * 119.53038 * 180.02562 * 10 9 8 12 12 C 1.35921 * 126.10761 * 179.97438 * 11 10 9 13 13 C 1.35235 * 107.60806 * 179.97438 * 12 11 10 14 14 C 1.39994 * 107.97307 * 0.02562 * 13 12 11 15 15 N 1.30795 * 108.37932 * 359.75701 * 14 13 12 16 16 N 1.32446 * 120.93878 * 359.72320 * 10 9 8 17 17 C 1.31629 * 121.80109 * 0.57179 * 16 10 9 18 18 C 1.53001 * 109.47135 * 239.99429 * 2 1 3 19 19 C 1.53942 * 113.74347 * 156.67875 * 18 2 1 20 20 N 1.47583 * 86.11884 * 222.05152 * 19 18 2 21 21 C 1.36934 * 134.49227 * 204.63957 * 20 19 18 22 22 H 1.08005 * 120.00222 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99791 * 359.97438 * 21 20 19 24 24 N 1.31616 * 120.00717 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99869 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46895 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47493 * 119.99744 * 25 23 21 28 28 H 1.48498 * 109.46822 * 240.00237 * 25 23 21 29 29 C 1.47579 * 91.01435 * 24.63953 * 20 19 18 30 30 H 1.08995 * 109.47529 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47001 * 300.00795 * 1 2 3 32 32 H 1.09006 * 109.46847 * 60.00268 * 1 2 3 33 33 H 0.97001 * 119.99743 * 95.00112 * 4 2 1 34 34 H 1.07999 * 120.82622 * 359.97438 * 8 7 5 35 35 H 1.07999 * 120.36909 * 180.02562 * 9 8 7 36 36 H 1.08001 * 126.19291 * 359.97438 * 12 11 10 37 37 H 1.08002 * 126.01294 * 180.02562 * 13 12 11 38 38 H 1.08006 * 125.81757 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.68478 * 179.71386 * 17 16 10 40 40 H 1.08997 * 112.94776 * 288.41502 * 18 2 1 41 41 H 1.09010 * 113.76649 * 336.35186 * 19 18 2 42 42 H 1.08994 * 113.77234 * 107.74465 * 19 18 2 43 43 H 0.96995 * 120.00615 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76621 * 221.06293 * 29 20 19 45 45 H 1.08999 * 113.77347 * 89.65970 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1613 2.4118 7 6 2.6397 -0.7143 3.5628 8 6 2.7771 -0.0249 4.7761 9 6 3.2411 -0.7189 5.8754 10 6 3.5542 -2.0685 5.7453 11 7 4.0230 -2.7754 6.8526 12 6 4.3666 -4.0902 6.8767 13 6 4.7691 -4.3849 8.1337 14 6 4.6696 -3.2197 8.9034 15 7 4.2283 -2.2558 8.1374 16 7 3.4078 -2.6928 4.5864 17 6 2.9740 -2.0682 3.5120 18 6 2.0400 -0.7214 -1.2492 19 6 3.4666 -0.3148 -1.6607 20 7 2.9584 -0.3122 -3.0462 21 6 3.5329 -0.4681 -4.2794 22 1 2.9224 -0.4230 -5.1692 23 6 4.9000 -0.6840 -4.3859 24 7 5.6442 -0.7384 -3.3017 25 14 5.6838 -0.8959 -6.0683 26 1 4.6384 -0.7929 -7.1179 27 1 6.7019 0.1648 -6.2773 28 1 6.3340 -2.2286 -6.1470 29 6 1.5824 -0.0741 -2.5689 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6318 1.1526 34 1 2.5262 1.0230 4.8488 35 1 3.3590 -0.2202 6.8261 36 1 4.3257 -4.7755 6.0430 37 1 5.1077 -5.3493 8.4824 38 1 4.9186 -3.1309 9.9506 39 1 2.8718 -2.6098 2.5832 40 1 1.8828 -1.7993 -1.2114 41 1 3.7641 0.6699 -1.3000 42 1 4.2152 -1.0835 -1.4687 43 1 6.5995 -0.8889 -3.3762 44 1 0.8266 -0.6508 -3.1021 45 1 1.3263 0.9812 -2.4749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970245890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:28 Heat of formation + Delta-G solvation = 148.295866 kcal Electronic energy + Delta-G solvation = -28086.640183 eV Core-core repulsion = 24108.451181 eV Total energy + Delta-G solvation = -3978.189002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96294 -40.70430 -39.38346 -38.04125 -34.96272 -34.08832 -32.96642 -32.26877 -31.12228 -30.59182 -29.39726 -27.54573 -25.40324 -24.69290 -24.28675 -23.90988 -22.12341 -21.30118 -21.17655 -20.45656 -19.35251 -18.83826 -17.64384 -17.07190 -16.72443 -15.98199 -15.82670 -15.60744 -15.04973 -14.98119 -14.85382 -14.54701 -14.00047 -13.87048 -13.81408 -13.62217 -13.43306 -13.17473 -13.13107 -13.03704 -12.46024 -12.16370 -11.71041 -11.38296 -11.32548 -11.30786 -10.94255 -10.82025 -10.75966 -10.44767 -10.36573 -10.35850 -9.97284 -9.79881 -9.76926 -9.59851 -9.43752 -8.95358 -8.81895 -8.66459 -6.89227 -5.78361 -3.10669 -0.01824 0.76276 1.52467 1.69124 2.35463 2.77045 3.09611 3.37634 3.42985 3.45567 3.53610 3.76979 4.04004 4.35782 4.43523 4.45597 4.54103 4.66327 4.75421 5.00486 5.05687 5.19645 5.23484 5.24337 5.26536 5.49117 5.51412 5.53187 5.61067 5.67658 5.75041 5.90412 5.91794 5.98433 6.10535 6.19936 6.31424 6.37150 6.52586 6.61263 6.62477 6.74292 6.91184 7.21320 7.33543 7.41336 7.50838 7.54654 7.96842 8.17496 9.03406 9.69515 10.58370 11.38693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.002156 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.104708 B =12982.524794 C =14329.500283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.090 0.910 4 N -0.710 5.710 5 C 0.565 3.435 6 O -0.536 6.536 7 C -0.195 4.195 8 C 0.007 3.993 9 C -0.172 4.172 10 C 0.388 3.612 11 N -0.329 5.329 12 C 0.082 3.918 13 C -0.265 4.265 14 C 0.067 3.933 15 N -0.284 5.284 16 N -0.509 5.509 17 C 0.173 3.827 18 C -0.148 4.148 19 C 0.170 3.830 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.194 0.806 39 H 0.173 0.827 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 -6.334 23.126 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.413 6.413 7 C -0.201 4.201 8 C -0.020 4.020 9 C -0.194 4.194 10 C 0.161 3.839 11 N -0.106 5.106 12 C -0.059 4.059 13 C -0.293 4.293 14 C -0.122 4.122 15 N -0.103 5.103 16 N -0.222 5.222 17 C 0.013 3.987 18 C -0.168 4.168 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.004 3.996 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.202 0.798 37 H 0.175 0.825 38 H 0.211 0.789 39 H 0.190 0.810 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.602 -5.172 22.713 24.212 hybrid contribution 0.805 -0.618 -0.816 1.302 sum -5.797 -5.790 21.897 23.380 Atomic orbital electron populations 1.22139 0.95461 1.01870 1.02242 1.21167 0.93602 0.97678 0.82934 0.89176 1.46028 1.66393 1.14013 1.09578 1.17821 0.77943 0.86479 0.82721 1.90789 1.50455 1.15228 1.84875 1.21088 1.07077 0.95845 0.96119 1.21662 0.89710 1.01001 0.89586 1.21581 1.03556 0.92786 1.01526 1.17863 0.93074 0.88326 0.84665 1.45779 1.50207 1.07627 1.07032 1.23017 0.97161 0.85756 0.99973 1.21715 1.13391 1.01056 0.93132 1.24220 0.96904 0.90749 1.00365 1.77479 1.22870 1.22598 0.87317 1.66858 1.17527 1.39663 0.98129 1.22764 0.90077 0.90640 0.95194 1.23847 1.01030 0.99725 0.92166 1.22273 0.91642 0.98326 0.83308 1.45954 1.02471 1.83263 1.02159 1.19071 0.91084 1.41901 0.82927 0.90197 1.24788 0.95979 1.02440 0.97328 1.69818 1.05113 1.55723 1.26182 0.86057 0.79234 0.77373 0.83161 1.20455 1.21759 1.21711 1.22499 0.89739 0.96781 0.90625 0.92641 0.92712 0.91245 0.76669 0.82415 0.82795 0.79774 0.82453 0.78879 0.81013 0.89292 0.95625 0.91008 0.93712 0.93696 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.29 37.16 0.35 -1.63 16 2 C 0.15 2.17 2.42 -67.93 -0.16 2.01 16 3 H 0.09 1.52 7.37 -51.93 -0.38 1.14 16 4 N -0.71 -8.85 5.03 -54.80 -0.28 -9.13 16 5 C 0.56 7.62 7.74 -12.41 -0.10 7.52 16 6 O -0.54 -8.98 16.08 5.29 0.09 -8.89 16 7 C -0.20 -2.19 5.89 -104.81 -0.62 -2.81 16 8 C 0.01 0.07 9.70 -38.91 -0.38 -0.31 16 9 C -0.17 -1.78 9.68 -39.32 -0.38 -2.16 16 10 C 0.39 4.40 7.55 -154.50 -1.17 3.23 16 11 N -0.33 -3.59 3.80 -12.10 -0.05 -3.63 16 12 C 0.08 0.72 11.09 -16.81 -0.19 0.54 16 13 C -0.26 -1.88 10.80 -39.99 -0.43 -2.31 16 14 C 0.07 0.50 12.02 -17.34 -0.21 0.29 16 15 N -0.28 -2.97 11.81 30.64 0.36 -2.61 16 16 N -0.51 -5.62 9.83 -11.99 -0.12 -5.74 16 17 C 0.17 1.73 10.71 -17.15 -0.18 1.55 16 18 C -0.15 -2.51 3.50 -89.69 -0.31 -2.82 16 19 C 0.17 3.85 7.07 -2.98 -0.02 3.83 16 20 N -0.61 -15.41 3.70 -177.90 -0.66 -16.07 16 21 C -0.22 -6.19 10.70 -15.06 -0.16 -6.36 16 22 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.19 11.38 55.49 0.63 -26.56 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 C 0.13 2.52 7.56 -2.97 -0.02 2.50 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.84 7.43 -51.93 -0.39 0.45 16 33 H 0.40 3.98 6.66 -40.82 -0.27 3.71 16 34 H 0.16 1.52 7.73 -52.49 -0.41 1.11 16 35 H 0.15 1.42 7.67 -52.49 -0.40 1.02 16 36 H 0.19 1.32 8.05 -52.49 -0.42 0.89 16 37 H 0.16 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.19 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.17 1.27 6.41 -52.49 -0.34 0.94 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.62 7.96 -51.92 -0.41 0.21 16 42 H 0.07 1.80 7.16 -51.93 -0.37 1.42 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -35.11 383.01 -9.24 -44.36 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.89 Total: 2.71 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -4.08 Total: 2.74 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.10 Total: -63.74 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.11 -9.24 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970245890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.653 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds