Wall clock time and date at job start Wed Apr 1 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47529 * 2 1 4 4 N 1.46501 * 109.46740 * 119.99910 * 2 1 3 5 5 C 1.34771 * 120.00266 * 274.99696 * 4 2 1 6 6 O 1.21581 * 119.99752 * 0.02562 * 5 4 2 7 7 C 1.47670 * 120.00387 * 180.02562 * 5 4 2 8 8 C 1.40227 * 120.49366 * 180.02562 * 7 5 4 9 9 C 1.38034 * 118.34930 * 179.97438 * 8 7 5 10 10 C 1.39154 * 119.26051 * 359.97438 * 9 8 7 11 11 N 1.39485 * 119.53038 * 180.02562 * 10 9 8 12 12 C 1.35921 * 126.10761 * 179.97438 * 11 10 9 13 13 C 1.35235 * 107.60806 * 179.97438 * 12 11 10 14 14 C 1.39994 * 107.97307 * 0.02562 * 13 12 11 15 15 N 1.30795 * 108.37932 * 359.75701 * 14 13 12 16 16 N 1.32446 * 120.93878 * 359.72320 * 10 9 8 17 17 C 1.31629 * 121.80109 * 0.57179 * 16 10 9 18 18 C 1.53001 * 109.47135 * 239.99429 * 2 1 3 19 19 C 1.53942 * 113.74347 * 156.67875 * 18 2 1 20 20 N 1.47583 * 86.11884 * 222.05152 * 19 18 2 21 21 C 1.36934 * 134.49227 * 204.63957 * 20 19 18 22 22 H 1.08005 * 120.00222 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99791 * 359.97438 * 21 20 19 24 24 N 1.31616 * 120.00717 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99869 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46895 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47493 * 119.99744 * 25 23 21 28 28 H 1.48498 * 109.46822 * 240.00237 * 25 23 21 29 29 C 1.47579 * 91.01435 * 24.63953 * 20 19 18 30 30 H 1.08995 * 109.47529 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47001 * 300.00795 * 1 2 3 32 32 H 1.09006 * 109.46847 * 60.00268 * 1 2 3 33 33 H 0.97001 * 119.99743 * 95.00112 * 4 2 1 34 34 H 1.07999 * 120.82622 * 359.97438 * 8 7 5 35 35 H 1.07999 * 120.36909 * 180.02562 * 9 8 7 36 36 H 1.08001 * 126.19291 * 359.97438 * 12 11 10 37 37 H 1.08002 * 126.01294 * 180.02562 * 13 12 11 38 38 H 1.08006 * 125.81757 * 179.97438 * 14 13 12 39 39 H 1.08002 * 119.68478 * 179.71386 * 17 16 10 40 40 H 1.08997 * 112.94776 * 288.41502 * 18 2 1 41 41 H 1.09010 * 113.76649 * 336.35186 * 19 18 2 42 42 H 1.08994 * 113.77234 * 107.74465 * 19 18 2 43 43 H 0.96995 * 120.00615 * 180.02562 * 24 23 21 44 44 H 1.09000 * 113.76621 * 221.06293 * 29 20 19 45 45 H 1.08999 * 113.77347 * 89.65970 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8575 1.1613 2.4118 7 6 2.6397 -0.7143 3.5628 8 6 2.7771 -0.0249 4.7761 9 6 3.2411 -0.7189 5.8754 10 6 3.5542 -2.0685 5.7453 11 7 4.0230 -2.7754 6.8526 12 6 4.3666 -4.0902 6.8767 13 6 4.7691 -4.3849 8.1337 14 6 4.6696 -3.2197 8.9034 15 7 4.2283 -2.2558 8.1374 16 7 3.4078 -2.6928 4.5864 17 6 2.9740 -2.0682 3.5120 18 6 2.0400 -0.7214 -1.2492 19 6 3.4666 -0.3148 -1.6607 20 7 2.9584 -0.3122 -3.0462 21 6 3.5329 -0.4681 -4.2794 22 1 2.9224 -0.4230 -5.1692 23 6 4.9000 -0.6840 -4.3859 24 7 5.6442 -0.7384 -3.3017 25 14 5.6838 -0.8959 -6.0683 26 1 4.6384 -0.7929 -7.1179 27 1 6.7019 0.1648 -6.2773 28 1 6.3340 -2.2286 -6.1470 29 6 1.5824 -0.0741 -2.5689 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6318 1.1526 34 1 2.5262 1.0230 4.8488 35 1 3.3590 -0.2202 6.8261 36 1 4.3257 -4.7755 6.0430 37 1 5.1077 -5.3493 8.4824 38 1 4.9186 -3.1309 9.9506 39 1 2.8718 -2.6098 2.5832 40 1 1.8828 -1.7993 -1.2114 41 1 3.7641 0.6699 -1.3000 42 1 4.2152 -1.0835 -1.4687 43 1 6.5995 -0.8889 -3.3762 44 1 0.8266 -0.6508 -3.1021 45 1 1.3263 0.9812 -2.4749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970245890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:27 Heat of formation + Delta-G solvation = 125.898991 kcal Electronic energy + Delta-G solvation = -28087.611384 eV Core-core repulsion = 24108.451181 eV Total energy + Delta-G solvation = -3979.160203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65124 -41.60369 -40.51283 -39.50356 -36.27337 -34.89077 -34.18011 -33.74982 -32.23923 -31.32384 -30.31589 -29.31408 -26.70899 -25.97353 -25.47881 -25.05120 -23.30263 -22.31205 -21.87557 -21.48690 -20.80488 -19.58856 -18.83889 -18.61964 -17.95362 -16.93071 -16.91328 -16.71810 -16.35182 -16.04174 -15.93594 -15.71230 -15.35388 -14.94312 -14.79050 -14.59415 -14.46796 -14.30327 -14.13804 -13.84543 -13.70075 -13.43143 -13.24712 -13.06849 -12.90408 -12.69426 -12.53365 -11.97813 -11.94111 -11.74028 -11.58023 -11.54309 -11.32795 -11.18290 -11.17835 -10.88337 -10.77892 -10.30002 -10.08803 -9.40801 -8.90762 -7.90386 -5.23481 -0.83657 -0.03121 0.80993 1.00454 1.45306 1.46242 1.56423 1.78131 1.82658 2.04810 2.47404 2.65965 3.03909 3.30833 3.33417 3.38952 3.51284 3.65737 3.73989 3.83682 3.96820 4.02320 4.06877 4.32425 4.35634 4.49441 4.51099 4.62083 4.65110 4.76606 4.77729 4.84736 4.87048 4.89292 5.02277 5.04368 5.12242 5.15797 5.27596 5.37175 5.46169 5.56077 5.57280 5.68429 5.93275 5.95214 6.21667 6.48731 6.68728 6.92973 7.13982 7.61804 8.57518 9.26498 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.002156 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.104708 B =12982.524794 C =14329.500283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 H 0.063 0.937 4 N -0.703 5.703 5 C 0.568 3.432 6 O -0.573 6.573 7 C -0.208 4.208 8 C 0.009 3.991 9 C -0.176 4.176 10 C 0.381 3.619 11 N -0.346 5.346 12 C 0.060 3.940 13 C -0.255 4.255 14 C 0.072 3.928 15 N -0.320 5.320 16 N -0.518 5.518 17 C 0.181 3.819 18 C -0.109 4.109 19 C 0.166 3.834 20 N -0.645 5.645 21 C -0.232 4.232 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.977 3.023 26 H -0.264 1.264 27 H -0.296 1.296 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.195 0.805 37 H 0.188 0.812 38 H 0.230 0.770 39 H 0.197 0.803 40 H 0.109 0.891 41 H 0.003 0.997 42 H 0.042 0.958 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -8.019 23.890 26.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.081 0.919 4 N -0.354 5.354 5 C 0.355 3.645 6 O -0.454 6.454 7 C -0.214 4.214 8 C -0.017 4.017 9 C -0.198 4.198 10 C 0.154 3.846 11 N -0.125 5.125 12 C -0.079 4.079 13 C -0.282 4.282 14 C -0.117 4.117 15 N -0.138 5.138 16 N -0.231 5.231 17 C 0.021 3.979 18 C -0.128 4.128 19 C 0.040 3.960 20 N -0.371 5.371 21 C -0.360 4.360 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.806 3.194 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.217 1.217 29 C 0.004 3.996 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.212 0.788 37 H 0.205 0.795 38 H 0.246 0.754 39 H 0.214 0.786 40 H 0.127 0.873 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.678 -6.891 23.491 25.656 hybrid contribution 1.145 -0.126 -0.930 1.481 sum -6.533 -7.018 22.560 24.513 Atomic orbital electron populations 1.22061 0.93086 1.03312 1.02390 1.20892 0.95208 0.95945 0.82477 0.91868 1.45886 1.66071 1.14610 1.08786 1.18057 0.77150 0.86002 0.83274 1.90769 1.52231 1.16872 1.85497 1.20911 1.08696 0.96424 0.95368 1.21750 0.89233 1.01245 0.89505 1.21623 1.03767 0.92686 1.01699 1.18145 0.92614 0.88808 0.85069 1.45928 1.51165 1.08300 1.07075 1.23442 0.97770 0.85395 1.01305 1.22139 1.11741 1.02084 0.92235 1.24942 0.94887 0.90178 1.01647 1.77462 1.24522 1.24166 0.87639 1.66946 1.18173 1.39734 0.98284 1.23119 0.88738 0.90203 0.95834 1.23460 0.96127 1.00772 0.92487 1.22174 0.94288 0.96358 0.83177 1.46395 1.05210 1.83443 1.02072 1.19484 0.91529 1.40539 0.84447 0.89729 1.25630 0.96703 1.03180 1.00798 1.70009 1.04833 1.57380 1.28135 0.85025 0.78215 0.76725 0.79465 1.18808 1.22366 1.21728 1.22703 0.87682 0.97754 0.91417 0.90507 0.93026 0.90692 0.75032 0.82016 0.82143 0.78801 0.79511 0.75369 0.78598 0.87294 0.97959 0.93915 0.94404 0.91595 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.29 71.98 0.67 -2.71 16 2 C 0.16 4.45 2.42 44.99 0.11 4.56 16 3 H 0.06 2.15 7.37 -2.39 -0.02 2.14 16 4 N -0.70 -16.80 5.03 -445.57 -2.24 -19.05 16 5 C 0.57 15.20 7.74 86.74 0.67 15.87 16 6 O -0.57 -19.49 16.08 -3.97 -0.06 -19.55 16 7 C -0.21 -4.61 5.89 -19.98 -0.12 -4.73 16 8 C 0.01 0.19 9.70 22.70 0.22 0.41 16 9 C -0.18 -3.63 9.68 22.44 0.22 -3.41 16 10 C 0.38 8.54 7.55 132.89 1.00 9.55 16 11 N -0.35 -7.36 3.80 -192.19 -0.73 -8.09 16 12 C 0.06 0.99 11.09 83.37 0.92 1.92 16 13 C -0.25 -3.02 10.80 22.00 0.24 -2.79 16 14 C 0.07 0.93 12.02 85.27 1.02 1.95 16 15 N -0.32 -6.40 11.81 -56.96 -0.67 -7.07 16 16 N -0.52 -11.09 9.83 -191.84 -1.89 -12.98 16 17 C 0.18 3.46 10.71 85.04 0.91 4.37 16 18 C -0.11 -3.55 3.50 -10.13 -0.04 -3.59 16 19 C 0.17 7.67 7.07 86.48 0.61 8.28 16 20 N -0.64 -32.49 3.70 -716.75 -2.65 -35.14 16 21 C -0.23 -12.93 10.70 84.03 0.90 -12.03 16 22 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 24 N -0.95 -57.84 11.38 21.65 0.25 -57.60 16 25 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 C 0.13 4.83 7.56 86.48 0.65 5.48 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.62 7.43 -2.38 -0.02 1.60 16 33 H 0.41 7.50 6.66 -92.71 -0.62 6.88 16 34 H 0.16 3.20 7.73 -2.91 -0.02 3.17 16 35 H 0.16 3.01 7.67 -2.91 -0.02 2.99 16 36 H 0.20 2.58 8.05 -2.91 -0.02 2.55 16 37 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.23 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.20 2.55 6.41 -2.91 -0.02 2.54 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.00 0.13 7.96 -2.38 -0.02 0.11 16 42 H 0.04 2.21 7.16 -2.39 -0.02 2.19 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -78.06 383.01 2.90 -75.16 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.41 Total: 16.90 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 8.46 Total: 19.58 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -7.93 Total: -139.93 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.06 2.90 -75.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970245890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.056 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds