Wall clock time and date at job start Wed Apr 1 2020 00:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47155 * 2 1 4 4 N 1.46502 * 109.47457 * 239.99786 * 2 1 3 5 5 C 1.34775 * 119.99802 * 84.99340 * 4 2 1 6 6 O 1.21583 * 120.00379 * 0.02562 * 5 4 2 7 7 C 1.47672 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.40231 * 120.49765 * 180.02562 * 7 5 4 9 9 C 1.38024 * 118.35477 * 179.97438 * 8 7 5 10 10 C 1.39158 * 119.25662 * 359.97438 * 9 8 7 11 11 N 1.39490 * 119.52834 * 179.97438 * 10 9 8 12 12 C 1.35918 * 126.10679 * 179.97438 * 11 10 9 13 13 C 1.35240 * 107.60790 * 179.71132 * 12 11 10 14 14 C 1.40010 * 107.96758 * 0.43015 * 13 12 11 15 15 N 1.30785 * 108.37827 * 359.56502 * 14 13 12 16 16 N 1.32441 * 120.93757 * 0.27745 * 10 9 8 17 17 C 1.31626 * 121.80333 * 359.43091 * 16 10 9 18 18 C 1.53004 * 109.47333 * 119.99710 * 2 1 3 19 19 C 1.53943 * 113.74072 * 282.19818 * 18 2 1 20 20 N 1.47812 * 86.03598 * 222.08377 * 19 18 2 21 21 C 1.36937 * 134.45643 * 204.64639 * 20 19 18 22 22 H 1.07996 * 120.00332 * 182.58442 * 21 20 19 23 23 C 1.38813 * 119.99957 * 2.58424 * 21 20 19 24 24 N 1.31619 * 120.00381 * 353.41438 * 23 21 20 25 25 Si 1.86807 * 120.00097 * 173.41657 * 23 21 20 26 26 H 1.48501 * 109.47159 * 94.97176 * 25 23 21 27 27 H 1.48498 * 109.47098 * 214.97131 * 25 23 21 28 28 H 1.48501 * 109.46801 * 334.96800 * 25 23 21 29 29 C 1.47574 * 91.04946 * 24.55089 * 20 19 18 30 30 H 1.09002 * 109.47519 * 64.49348 * 1 2 3 31 31 H 1.09005 * 109.46894 * 184.48832 * 1 2 3 32 32 H 1.09001 * 109.47327 * 304.49178 * 1 2 3 33 33 H 0.96993 * 120.00248 * 264.99858 * 4 2 1 34 34 H 1.08001 * 120.81980 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.36842 * 179.97438 * 9 8 7 36 36 H 1.07996 * 126.19241 * 0.02562 * 12 11 10 37 37 H 1.07996 * 126.01854 * 180.29859 * 13 12 11 38 38 H 1.08004 * 125.81054 * 179.82298 * 14 13 12 39 39 H 1.08003 * 119.68160 * 180.28462 * 17 16 10 40 40 H 1.08998 * 112.94304 * 53.79089 * 18 2 1 41 41 H 1.08999 * 113.77127 * 336.34721 * 19 18 2 42 42 H 1.08999 * 113.76933 * 107.74697 * 19 18 2 43 43 H 0.96994 * 120.00704 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.76803 * 221.15158 * 29 20 19 45 45 H 1.09005 * 113.87116 * 89.77226 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8581 1.1614 -2.4117 7 6 2.6387 -0.7146 -3.5630 8 6 2.7771 -0.0251 -4.7762 9 6 3.2411 -0.7191 -5.8753 10 6 3.5545 -2.0686 -5.7450 11 7 4.0234 -2.7756 -6.8523 12 6 4.3682 -4.0901 -6.8760 13 6 4.7637 -4.3866 -8.1348 14 6 4.6686 -3.2202 -8.9035 15 7 4.2228 -2.2576 -8.1386 16 7 3.4082 -2.6927 -4.5861 17 6 2.9742 -2.0682 -3.5118 18 6 2.0400 -0.7212 1.2493 19 6 1.9659 0.1299 2.5299 20 7 3.3033 -0.4144 2.8462 21 6 4.0103 -0.6096 4.0025 22 1 5.0167 -0.9993 3.9609 23 6 3.4336 -0.3067 5.2283 24 7 2.2602 0.2879 5.2746 25 14 4.3228 -0.7427 6.8122 26 1 5.0968 0.4331 7.2851 27 1 3.3302 -1.1304 7.8465 28 1 5.2480 -1.8774 6.5642 29 6 3.5693 -0.6650 1.4164 30 1 -0.3634 0.4425 -0.9275 31 1 -0.3633 -1.0246 0.0804 32 1 -0.3634 0.5820 0.8470 33 1 2.2491 -1.6317 -1.1526 34 1 2.5275 1.0232 -4.8485 35 1 3.3597 -0.2202 -6.8259 36 1 4.3283 -4.7750 -6.0420 37 1 5.0966 -5.3525 -8.4850 38 1 4.9168 -3.1317 -9.9509 39 1 2.8721 -2.6097 -2.5829 40 1 1.6226 -1.7217 1.3625 41 1 1.9614 1.2039 2.3440 42 1 1.1864 -0.1864 3.2231 43 1 1.8570 0.4992 6.1311 44 1 4.0676 -1.6147 1.2222 45 1 4.0371 0.1739 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970245891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:31 Heat of formation + Delta-G solvation = 148.130564 kcal Electronic energy + Delta-G solvation = -28018.196262 eV Core-core repulsion = 24040.000092 eV Total energy + Delta-G solvation = -3978.196170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.01435 -40.75829 -39.42279 -38.01840 -34.97365 -34.13976 -33.02211 -32.23737 -31.19120 -30.64790 -29.45230 -27.50658 -25.40738 -24.69744 -24.34932 -23.94677 -22.13900 -21.32571 -21.21036 -20.47702 -19.38297 -18.89394 -17.71677 -17.12645 -16.73448 -16.03408 -15.81905 -15.64486 -15.11237 -14.96299 -14.77801 -14.57036 -14.12540 -13.94383 -13.82839 -13.67476 -13.50689 -13.22954 -13.18934 -13.09903 -12.34686 -12.12412 -11.62898 -11.41693 -11.35695 -11.28476 -10.94851 -10.86099 -10.70137 -10.50287 -10.42349 -10.39467 -10.05721 -9.85317 -9.73194 -9.64936 -9.47251 -9.01003 -8.76363 -8.71236 -6.90452 -5.79175 -3.10129 -0.07451 0.70282 1.47377 1.63921 2.30756 2.72111 3.05275 3.37931 3.43119 3.45238 3.48001 3.71079 3.98518 4.29976 4.40011 4.43611 4.49246 4.61404 4.70478 4.95515 5.06586 5.13068 5.16308 5.19450 5.36722 5.44650 5.47852 5.50922 5.57876 5.64036 5.77732 5.86003 5.94631 6.02507 6.05794 6.22248 6.32108 6.40651 6.50725 6.57218 6.59284 6.74014 6.85865 7.19502 7.34179 7.35736 7.46960 7.53588 7.96303 8.13417 9.02918 9.69434 10.58207 11.38492 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.001966 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.505678 B =14237.769331 C =15227.678534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.711 5.711 5 C 0.563 3.437 6 O -0.534 6.534 7 C -0.195 4.195 8 C 0.007 3.993 9 C -0.172 4.172 10 C 0.388 3.612 11 N -0.329 5.329 12 C 0.081 3.919 13 C -0.264 4.264 14 C 0.067 3.933 15 N -0.284 5.284 16 N -0.509 5.509 17 C 0.172 3.828 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.397 0.603 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.195 0.805 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -8.309 -26.923 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.361 5.361 5 C 0.349 3.651 6 O -0.412 6.412 7 C -0.202 4.202 8 C -0.020 4.020 9 C -0.194 4.194 10 C 0.161 3.839 11 N -0.107 5.107 12 C -0.060 4.060 13 C -0.293 4.293 14 C -0.122 4.122 15 N -0.102 5.102 16 N -0.222 5.222 17 C 0.012 3.988 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.202 0.798 37 H 0.176 0.824 38 H 0.211 0.789 39 H 0.189 0.811 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.287 -7.093 -26.393 27.331 hybrid contribution 0.744 -0.699 0.809 1.303 sum 0.458 -7.792 -25.584 26.749 Atomic orbital electron populations 1.22114 0.95199 1.02043 1.02271 1.21186 0.93938 0.97551 0.82689 0.89174 1.46070 1.66407 1.13974 1.09676 1.17834 0.78053 0.86522 0.82710 1.90800 1.50348 1.15235 1.84817 1.21104 1.07034 0.95849 0.96165 1.21671 0.89660 1.01048 0.89585 1.21589 1.03496 0.92791 1.01536 1.17863 0.93061 0.88319 0.84670 1.45782 1.50235 1.07727 1.06937 1.23011 0.97268 0.85710 0.99963 1.21725 1.13464 1.00974 0.93088 1.24228 0.96820 0.90746 1.00406 1.77481 1.22792 1.22694 0.87269 1.66852 1.17606 1.39614 0.98146 1.22750 0.90217 0.90622 0.95206 1.23867 0.97653 1.00795 0.94456 1.22233 0.89663 0.93955 0.89140 1.46034 1.16064 1.72067 0.99631 1.19024 0.96907 1.36684 0.82539 0.90312 1.24781 0.97307 1.00854 0.97453 1.69815 1.17201 1.45503 1.24244 0.86123 0.78400 0.78036 0.83328 1.21695 1.21572 1.20582 1.22538 0.93017 0.97719 0.86866 0.92773 0.92625 0.90970 0.76802 0.82397 0.82775 0.79787 0.82437 0.78857 0.81057 0.89201 0.95343 0.90792 0.93618 0.94084 0.95031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.43 37.15 0.35 -1.73 16 2 C 0.15 2.17 2.28 -67.93 -0.16 2.01 16 3 H 0.09 1.52 7.49 -51.93 -0.39 1.13 16 4 N -0.71 -8.38 4.91 -54.80 -0.27 -8.65 16 5 C 0.56 7.23 7.74 -12.41 -0.10 7.13 16 6 O -0.53 -8.73 16.08 5.29 0.09 -8.64 16 7 C -0.20 -2.05 5.89 -104.81 -0.62 -2.66 16 8 C 0.01 0.07 9.70 -38.91 -0.38 -0.31 16 9 C -0.17 -1.66 9.68 -39.32 -0.38 -2.04 16 10 C 0.39 4.13 7.55 -154.50 -1.17 2.96 16 11 N -0.33 -3.38 3.80 -12.10 -0.05 -3.43 16 12 C 0.08 0.67 11.09 -16.81 -0.19 0.48 16 13 C -0.26 -1.73 10.80 -39.99 -0.43 -2.16 16 14 C 0.07 0.47 12.02 -17.33 -0.21 0.26 16 15 N -0.28 -2.82 11.81 30.65 0.36 -2.45 16 16 N -0.51 -5.21 9.83 -11.99 -0.12 -5.32 16 17 C 0.17 1.57 10.71 -17.15 -0.18 1.38 16 18 C -0.15 -2.50 3.35 -89.70 -0.30 -2.80 16 19 C 0.18 3.96 7.02 -2.84 -0.02 3.94 16 20 N -0.61 -15.40 3.70 -177.72 -0.66 -16.06 16 21 C -0.22 -6.25 10.69 -15.06 -0.16 -6.41 16 22 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.07 11.43 55.49 0.63 -26.43 16 25 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.12 2.43 8.38 -2.97 -0.02 2.40 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.62 6.66 -40.82 -0.27 3.35 16 34 H 0.16 1.43 7.73 -52.49 -0.41 1.03 16 35 H 0.15 1.34 7.67 -52.49 -0.40 0.94 16 36 H 0.19 1.19 8.05 -52.49 -0.42 0.76 16 37 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.19 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.17 1.10 6.41 -52.48 -0.34 0.76 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.07 1.84 7.20 -51.93 -0.37 1.46 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -34.93 384.57 -9.24 -44.17 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.95 Total: 1.88 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -4.05 Total: 2.15 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.09 Total: -62.35 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.93 -9.24 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970245891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.303 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds