Wall clock time and date at job start Wed Apr 1 2020 00:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47155 * 2 1 4 4 N 1.46502 * 109.47457 * 239.99786 * 2 1 3 5 5 C 1.34775 * 119.99802 * 84.99340 * 4 2 1 6 6 O 1.21583 * 120.00379 * 0.02562 * 5 4 2 7 7 C 1.47672 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.40231 * 120.49765 * 180.02562 * 7 5 4 9 9 C 1.38024 * 118.35477 * 179.97438 * 8 7 5 10 10 C 1.39158 * 119.25662 * 359.97438 * 9 8 7 11 11 N 1.39490 * 119.52834 * 179.97438 * 10 9 8 12 12 C 1.35918 * 126.10679 * 179.97438 * 11 10 9 13 13 C 1.35240 * 107.60790 * 179.71132 * 12 11 10 14 14 C 1.40010 * 107.96758 * 0.43015 * 13 12 11 15 15 N 1.30785 * 108.37827 * 359.56502 * 14 13 12 16 16 N 1.32441 * 120.93757 * 0.27745 * 10 9 8 17 17 C 1.31626 * 121.80333 * 359.43091 * 16 10 9 18 18 C 1.53004 * 109.47333 * 119.99710 * 2 1 3 19 19 C 1.53943 * 113.74072 * 282.19818 * 18 2 1 20 20 N 1.47812 * 86.03598 * 222.08377 * 19 18 2 21 21 C 1.36937 * 134.45643 * 204.64639 * 20 19 18 22 22 H 1.07996 * 120.00332 * 182.58442 * 21 20 19 23 23 C 1.38813 * 119.99957 * 2.58424 * 21 20 19 24 24 N 1.31619 * 120.00381 * 353.41438 * 23 21 20 25 25 Si 1.86807 * 120.00097 * 173.41657 * 23 21 20 26 26 H 1.48501 * 109.47159 * 94.97176 * 25 23 21 27 27 H 1.48498 * 109.47098 * 214.97131 * 25 23 21 28 28 H 1.48501 * 109.46801 * 334.96800 * 25 23 21 29 29 C 1.47574 * 91.04946 * 24.55089 * 20 19 18 30 30 H 1.09002 * 109.47519 * 64.49348 * 1 2 3 31 31 H 1.09005 * 109.46894 * 184.48832 * 1 2 3 32 32 H 1.09001 * 109.47327 * 304.49178 * 1 2 3 33 33 H 0.96993 * 120.00248 * 264.99858 * 4 2 1 34 34 H 1.08001 * 120.81980 * 0.02562 * 8 7 5 35 35 H 1.08002 * 120.36842 * 179.97438 * 9 8 7 36 36 H 1.07996 * 126.19241 * 0.02562 * 12 11 10 37 37 H 1.07996 * 126.01854 * 180.29859 * 13 12 11 38 38 H 1.08004 * 125.81054 * 179.82298 * 14 13 12 39 39 H 1.08003 * 119.68160 * 180.28462 * 17 16 10 40 40 H 1.08998 * 112.94304 * 53.79089 * 18 2 1 41 41 H 1.08999 * 113.77127 * 336.34721 * 19 18 2 42 42 H 1.08999 * 113.76933 * 107.74697 * 19 18 2 43 43 H 0.96994 * 120.00704 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.76803 * 221.15158 * 29 20 19 45 45 H 1.09005 * 113.87116 * 89.77226 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8581 1.1614 -2.4117 7 6 2.6387 -0.7146 -3.5630 8 6 2.7771 -0.0251 -4.7762 9 6 3.2411 -0.7191 -5.8753 10 6 3.5545 -2.0686 -5.7450 11 7 4.0234 -2.7756 -6.8523 12 6 4.3682 -4.0901 -6.8760 13 6 4.7637 -4.3866 -8.1348 14 6 4.6686 -3.2202 -8.9035 15 7 4.2228 -2.2576 -8.1386 16 7 3.4082 -2.6927 -4.5861 17 6 2.9742 -2.0682 -3.5118 18 6 2.0400 -0.7212 1.2493 19 6 1.9659 0.1299 2.5299 20 7 3.3033 -0.4144 2.8462 21 6 4.0103 -0.6096 4.0025 22 1 5.0167 -0.9993 3.9609 23 6 3.4336 -0.3067 5.2283 24 7 2.2602 0.2879 5.2746 25 14 4.3228 -0.7427 6.8122 26 1 5.0968 0.4331 7.2851 27 1 3.3302 -1.1304 7.8465 28 1 5.2480 -1.8774 6.5642 29 6 3.5693 -0.6650 1.4164 30 1 -0.3634 0.4425 -0.9275 31 1 -0.3633 -1.0246 0.0804 32 1 -0.3634 0.5820 0.8470 33 1 2.2491 -1.6317 -1.1526 34 1 2.5275 1.0232 -4.8485 35 1 3.3597 -0.2202 -6.8259 36 1 4.3283 -4.7750 -6.0420 37 1 5.0966 -5.3525 -8.4850 38 1 4.9168 -3.1317 -9.9509 39 1 2.8721 -2.6097 -2.5829 40 1 1.6226 -1.7217 1.3625 41 1 1.9614 1.2039 2.3440 42 1 1.1864 -0.1864 3.2231 43 1 1.8570 0.4992 6.1311 44 1 4.0676 -1.6147 1.2222 45 1 4.0371 0.1739 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970245891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:30 Heat of formation + Delta-G solvation = 126.055543 kcal Electronic energy + Delta-G solvation = -28019.153507 eV Core-core repulsion = 24040.000092 eV Total energy + Delta-G solvation = -3979.153415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.64301 -41.60311 -40.50810 -39.47033 -36.27015 -34.88169 -34.15157 -33.73958 -32.28467 -31.32263 -30.31879 -29.29361 -26.66858 -26.01932 -25.50027 -25.03582 -23.24452 -22.30293 -21.86497 -21.46904 -20.85542 -19.58522 -18.86143 -18.63523 -17.91310 -16.97763 -16.78249 -16.67439 -16.33990 -16.04150 -15.88932 -15.79681 -15.35483 -15.03252 -14.79925 -14.60784 -14.46932 -14.29489 -14.11143 -13.85294 -13.69271 -13.40562 -13.21269 -13.06368 -12.97128 -12.66879 -12.36615 -12.05592 -11.94018 -11.79833 -11.61781 -11.56733 -11.29494 -11.20351 -11.17165 -10.81040 -10.77349 -10.29340 -10.09940 -9.39848 -8.91703 -7.90811 -5.22701 -0.82747 -0.01826 0.81963 1.01593 1.46111 1.47235 1.56775 1.78985 1.83695 2.02479 2.47917 2.67107 3.05180 3.30763 3.34147 3.39692 3.49349 3.66249 3.73343 3.86642 3.98200 4.03123 4.07564 4.28972 4.36470 4.46790 4.51520 4.60679 4.65951 4.78376 4.79688 4.85361 4.88265 4.88789 4.98760 5.02969 5.11404 5.16949 5.26741 5.33729 5.48779 5.56410 5.56678 5.67526 5.94549 5.94953 6.22673 6.50761 6.69634 6.92928 7.15910 7.61791 8.57575 9.26683 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.001966 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.505678 B =14237.769331 C =15227.678534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.064 0.936 4 N -0.699 5.699 5 C 0.568 3.432 6 O -0.574 6.574 7 C -0.207 4.207 8 C 0.009 3.991 9 C -0.176 4.176 10 C 0.382 3.618 11 N -0.346 5.346 12 C 0.061 3.939 13 C -0.255 4.255 14 C 0.072 3.928 15 N -0.320 5.320 16 N -0.517 5.517 17 C 0.183 3.817 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.083 0.917 23 C -0.067 4.067 24 N -0.953 5.953 25 Si 0.977 3.023 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.126 3.874 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.196 0.804 37 H 0.187 0.813 38 H 0.229 0.771 39 H 0.201 0.799 40 H 0.110 0.890 41 H 0.011 0.989 42 H 0.046 0.954 43 H 0.249 0.751 44 H 0.064 0.936 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -10.777 -28.691 30.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.083 0.917 4 N -0.351 5.351 5 C 0.356 3.644 6 O -0.454 6.454 7 C -0.213 4.213 8 C -0.018 4.018 9 C -0.199 4.199 10 C 0.154 3.846 11 N -0.125 5.125 12 C -0.078 4.078 13 C -0.283 4.283 14 C -0.117 4.117 15 N -0.138 5.138 16 N -0.230 5.230 17 C 0.023 3.977 18 C -0.128 4.128 19 C 0.044 3.956 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.100 0.900 23 C -0.260 4.260 24 N -0.602 5.602 25 Si 0.805 3.195 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.001 3.999 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.213 0.787 37 H 0.204 0.796 38 H 0.245 0.755 39 H 0.217 0.783 40 H 0.128 0.872 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.613 -9.616 -28.213 29.813 hybrid contribution 0.546 0.031 1.194 1.313 sum 1.159 -9.585 -27.020 28.693 Atomic orbital electron populations 1.22054 0.93896 1.03206 1.01913 1.20803 0.94799 0.96024 0.82605 0.91748 1.45810 1.66061 1.14631 1.08548 1.18074 0.77155 0.85986 0.83234 1.90787 1.52161 1.17061 1.85438 1.20886 1.08707 0.96484 0.95212 1.21740 0.89213 1.01234 0.89593 1.21611 1.03833 0.92754 1.01656 1.18137 0.92584 0.88745 0.85105 1.45931 1.51158 1.08407 1.06967 1.23446 0.97746 0.85337 1.01272 1.22145 1.11905 1.01966 0.92259 1.24934 0.94877 0.90237 1.01663 1.77463 1.24456 1.24264 0.87659 1.66955 1.18230 1.39613 0.98249 1.23151 0.88614 0.90048 0.95910 1.23456 0.95948 1.00523 0.92848 1.22149 0.88196 0.93783 0.91510 1.46482 1.17033 1.72320 1.01220 1.19428 0.97270 1.35722 0.83961 0.89967 1.25619 0.98319 1.01456 1.00637 1.70001 1.18750 1.46997 1.24439 0.85086 0.77277 0.77901 0.79202 1.21827 1.21882 1.19056 1.22701 0.94908 0.98569 0.83715 0.92742 0.90574 0.91872 0.74831 0.82198 0.82313 0.78660 0.79559 0.75482 0.78263 0.87211 0.97114 0.93607 0.94241 0.91738 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.43 71.98 0.68 -3.16 16 2 C 0.16 4.53 2.28 44.99 0.10 4.63 16 3 H 0.06 2.18 7.49 -2.39 -0.02 2.17 16 4 N -0.70 -15.12 4.91 -445.57 -2.19 -17.30 16 5 C 0.57 13.98 7.74 86.74 0.67 14.65 16 6 O -0.57 -18.76 16.08 -3.98 -0.06 -18.82 16 7 C -0.21 -4.08 5.89 -19.99 -0.12 -4.19 16 8 C 0.01 0.17 9.70 22.70 0.22 0.39 16 9 C -0.18 -3.34 9.68 22.44 0.22 -3.12 16 10 C 0.38 7.77 7.55 132.89 1.00 8.77 16 11 N -0.35 -6.75 3.80 -192.19 -0.73 -7.48 16 12 C 0.06 0.90 11.09 83.37 0.92 1.83 16 13 C -0.26 -2.67 10.80 22.01 0.24 -2.43 16 14 C 0.07 0.83 12.02 85.28 1.02 1.86 16 15 N -0.32 -5.97 11.81 -56.96 -0.67 -6.65 16 16 N -0.52 -9.72 9.83 -191.85 -1.89 -11.61 16 17 C 0.18 2.95 10.71 85.04 0.91 3.86 16 18 C -0.11 -3.52 3.35 -10.14 -0.03 -3.56 16 19 C 0.17 7.80 7.02 86.44 0.61 8.41 16 20 N -0.64 -32.49 3.70 -716.19 -2.65 -35.15 16 21 C -0.24 -13.16 10.69 84.03 0.90 -12.27 16 22 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.95 -57.45 11.43 21.65 0.25 -57.20 16 25 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.13 4.73 8.38 86.49 0.72 5.45 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.41 6.19 6.66 -92.71 -0.62 5.58 16 34 H 0.16 2.93 7.73 -2.91 -0.02 2.91 16 35 H 0.16 2.76 7.67 -2.91 -0.02 2.74 16 36 H 0.20 2.19 8.05 -2.91 -0.02 2.16 16 37 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 39 H 0.20 1.87 6.41 -2.91 -0.02 1.85 16 40 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.01 0.54 8.04 -2.39 -0.02 0.52 16 42 H 0.05 2.35 7.20 -2.39 -0.02 2.33 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.03 1.20 8.10 -2.38 -0.02 1.18 16 Total: -1.00 -77.56 384.57 3.03 -74.53 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.41 Total: 14.28 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 8.54 Total: 17.75 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -7.88 Total: -135.38 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.06 Total: -18.82 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.56 3.03 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970245891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.583 kcal (2) G-P(sol) polarization free energy of solvation -77.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds