Wall clock time and date at job start Wed Apr 1 2020 00:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47906 * 2 1 4 4 N 1.46509 * 109.46851 * 119.99893 * 2 1 3 5 5 C 1.34774 * 119.99712 * 274.99585 * 4 2 1 6 6 O 1.21584 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.47595 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.39974 * 120.59190 * 326.92816 * 7 5 4 9 9 C 1.38351 * 118.34279 * 179.97438 * 8 7 5 10 10 C 1.38388 * 119.45574 * 359.97438 * 9 8 7 11 11 N 1.31838 * 121.18338 * 359.97438 * 10 9 8 12 12 C 1.32259 * 121.80471 * 359.76162 * 11 10 9 13 13 N 1.39351 * 119.80042 * 180.26548 * 12 11 10 14 14 C 1.35933 * 126.10776 * 319.44962 * 13 12 11 15 15 C 1.35240 * 107.60197 * 179.89574 * 14 13 12 16 16 C 1.40013 * 107.96872 * 0.36775 * 15 14 13 17 17 N 1.30781 * 108.38233 * 359.76688 * 16 15 14 18 18 C 1.53000 * 109.47235 * 239.99313 * 2 1 3 19 19 C 1.53488 * 114.21277 * 175.07546 * 18 2 1 20 20 N 1.47066 * 87.98724 * 220.34803 * 19 18 2 21 21 C 1.36939 * 136.05425 * 207.08613 * 20 19 18 22 22 H 1.08000 * 119.99863 * 7.45672 * 21 20 19 23 23 C 1.38812 * 119.99609 * 187.46344 * 21 20 19 24 24 N 1.31616 * 119.99700 * 195.03007 * 23 21 20 25 25 Si 1.86799 * 120.00217 * 15.02558 * 23 21 20 26 26 H 1.48496 * 109.47496 * 270.00129 * 25 23 21 27 27 H 1.48502 * 109.46887 * 30.00449 * 25 23 21 28 28 H 1.48503 * 109.47329 * 149.99895 * 25 23 21 29 29 C 1.47064 * 87.88547 * 27.34056 * 20 19 18 30 30 H 1.09008 * 109.46768 * 304.84904 * 1 2 3 31 31 H 1.09000 * 109.47238 * 64.84297 * 1 2 3 32 32 H 1.08997 * 109.47746 * 184.84980 * 1 2 3 33 33 H 0.96992 * 120.00216 * 94.99840 * 4 2 1 34 34 H 1.07995 * 120.82601 * 359.95273 * 8 7 5 35 35 H 1.07998 * 120.26995 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.40567 * 179.97438 * 10 9 8 37 37 H 1.07996 * 126.19942 * 0.02976 * 14 13 12 38 38 H 1.08000 * 126.01855 * 180.17174 * 15 14 13 39 39 H 1.08001 * 125.80831 * 179.74036 * 16 15 14 40 40 H 1.09003 * 113.41175 * 308.28021 * 18 2 1 41 41 H 1.08994 * 113.47092 * 105.56098 * 19 18 2 42 42 H 1.09006 * 113.51839 * 335.13929 * 19 18 2 43 43 H 0.96999 * 120.00574 * 354.93176 * 24 23 21 44 44 H 1.08996 * 113.46973 * 87.44036 * 29 20 19 45 45 H 1.09002 * 113.46715 * 217.88440 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8584 1.1616 2.4115 7 6 2.6395 -0.7137 3.5622 8 6 2.3428 -2.0649 3.7761 9 6 2.8286 -2.6707 4.9211 10 6 3.5864 -1.9320 5.8128 11 7 3.8546 -0.6604 5.5908 12 6 3.4192 -0.0345 4.5100 13 7 3.7322 1.3092 4.3145 14 6 3.7423 2.2765 5.2695 15 6 4.0990 3.4366 4.6729 16 6 4.3057 3.1770 3.3127 17 7 4.0868 1.9057 3.0975 18 6 2.0400 -0.7214 -1.2491 19 6 3.5648 -0.6816 -1.4206 20 7 3.3455 -0.4677 -2.8590 21 6 4.0390 -0.7260 -4.0112 22 1 4.9453 -1.3122 -3.9760 23 6 3.5770 -0.2341 -5.2243 24 7 4.0553 -0.7125 -6.3533 25 14 2.2766 1.1065 -5.2543 26 1 0.9272 0.4869 -5.2749 27 1 2.4131 1.9556 -4.0437 28 1 2.4558 1.9429 -6.4682 29 6 2.0566 0.1513 -2.5150 30 1 -0.3633 0.5873 0.8434 31 1 -0.3634 0.4369 -0.9302 32 1 -0.3634 -1.0239 0.0869 33 1 2.2489 -1.6317 1.1528 34 1 1.7492 -2.6204 3.0652 35 1 2.6188 -3.7119 5.1170 36 1 3.9648 -2.4056 6.7066 37 1 3.5099 2.1424 6.3156 38 1 4.2027 4.3952 5.1593 39 1 4.5961 3.9031 2.5678 40 1 1.6001 -1.7089 -1.3889 41 1 4.0522 -1.6293 -1.1919 42 1 4.0365 0.1656 -0.9227 43 1 4.7818 -1.3550 -6.3388 44 1 2.1298 1.2184 -2.3054 45 1 1.2590 -0.0869 -3.2187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970252570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:34 Heat of formation + Delta-G solvation = 165.932005 kcal Electronic energy + Delta-G solvation = -29524.105264 eV Core-core repulsion = 25546.681022 eV Total energy + Delta-G solvation = -3977.424242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77814 -40.44199 -39.55697 -38.33587 -35.05052 -33.93180 -33.24421 -32.31768 -30.75447 -30.37313 -29.54975 -27.79711 -25.46930 -25.00963 -24.40774 -23.73515 -21.62073 -21.21424 -20.90345 -20.49301 -19.56731 -18.63785 -17.74598 -17.47082 -17.17073 -16.15056 -15.86739 -15.35814 -15.10512 -15.02689 -14.67654 -14.37421 -14.15219 -13.90226 -13.76867 -13.55234 -13.46827 -13.33519 -13.07147 -12.86473 -12.83899 -12.28556 -11.98317 -11.75254 -11.19541 -11.07164 -10.86979 -10.72394 -10.65657 -10.44180 -10.33919 -10.20403 -10.00286 -9.79835 -9.43649 -9.34958 -9.15446 -8.94947 -8.66961 -8.60065 -7.15746 -6.28970 -3.20576 0.12586 0.50987 1.84909 2.01089 2.66445 2.79169 3.00273 3.36175 3.42693 3.51409 3.65063 3.97377 4.13792 4.32735 4.36219 4.53856 4.61218 4.72501 4.81506 4.86072 4.93043 5.03511 5.13333 5.25851 5.43817 5.44946 5.45671 5.49211 5.56427 5.58514 5.76124 5.82979 5.87252 5.88619 6.08133 6.18714 6.26940 6.30744 6.37020 6.42566 6.48250 6.59142 6.90558 6.95729 7.14219 7.15281 7.49347 7.62432 8.21719 8.25439 8.99175 9.52695 10.39797 11.21091 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.003000 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.745705 B = 9330.254517 C =10051.641992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.712 5.712 5 C 0.567 3.433 6 O -0.510 6.510 7 C -0.168 4.168 8 C -0.030 4.030 9 C -0.183 4.183 10 C 0.145 3.855 11 N -0.500 5.500 12 C 0.415 3.585 13 N -0.328 5.328 14 C 0.071 3.929 15 C -0.258 4.258 16 C 0.059 3.941 17 N -0.244 5.244 18 C -0.141 4.141 19 C 0.127 3.873 20 N -0.625 5.625 21 C -0.304 4.304 22 H 0.081 0.919 23 C -0.024 4.024 24 N -0.933 5.933 25 Si 1.061 2.939 26 H -0.293 1.293 27 H -0.281 1.281 28 H -0.295 1.295 29 C 0.115 3.885 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.189 0.811 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.047 0.953 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -1.558 28.658 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.109 0.891 4 N -0.363 5.363 5 C 0.351 3.649 6 O -0.385 6.385 7 C -0.176 4.176 8 C -0.056 4.056 9 C -0.203 4.203 10 C -0.014 4.014 11 N -0.212 5.212 12 C 0.187 3.813 13 N -0.107 5.107 14 C -0.069 4.069 15 C -0.287 4.287 16 C -0.131 4.131 17 N -0.061 5.061 18 C -0.161 4.161 19 C 0.000 4.000 20 N -0.352 5.352 21 C -0.431 4.431 22 H 0.099 0.901 23 C -0.223 4.223 24 N -0.575 5.575 25 Si 0.892 3.108 26 H -0.221 1.221 27 H -0.207 1.207 28 H -0.223 1.223 29 C -0.011 4.011 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.191 0.809 38 H 0.171 0.829 39 H 0.206 0.794 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.843 -0.367 27.185 27.808 hybrid contribution 0.777 -1.152 1.102 1.773 sum -5.066 -1.518 28.287 28.777 Atomic orbital electron populations 1.22135 0.95308 1.01842 1.02467 1.21006 0.93679 0.97567 0.82611 0.89085 1.45919 1.67128 1.13850 1.09374 1.17610 0.78257 0.86503 0.82537 1.90815 1.48653 1.14552 1.84465 1.20774 1.02487 0.95581 0.98793 1.21796 0.95159 0.91812 0.96838 1.22162 1.00527 1.02337 0.95302 1.22782 0.92586 0.87513 0.98477 1.67102 1.21970 1.11635 1.20511 1.17454 0.90930 0.82670 0.90256 1.45433 1.53892 1.04111 1.07257 1.22699 1.00596 0.88082 0.95560 1.21574 1.13460 0.99117 0.94519 1.24087 0.98665 0.93605 0.96752 1.77661 1.18547 1.09437 1.00482 1.23559 0.98545 1.00307 0.93671 1.22320 0.92556 0.98488 0.86605 1.46198 1.18398 1.69675 1.00943 1.20141 1.09262 1.30524 0.83132 0.90132 1.25777 1.03833 1.02064 0.90655 1.70901 1.27661 1.32820 1.26136 0.83796 0.75179 0.76725 0.75056 1.22053 1.20687 1.22250 1.22623 0.90288 0.95652 0.92534 0.92549 0.91191 0.92603 0.76922 0.83214 0.83235 0.81171 0.80877 0.82911 0.79395 0.88405 0.94069 0.94563 0.92910 0.93579 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 37.16 0.35 -1.64 16 2 C 0.16 2.24 2.34 -67.93 -0.16 2.08 16 3 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 4 N -0.71 -8.90 4.88 -54.83 -0.27 -9.17 16 5 C 0.57 8.02 6.75 -12.44 -0.08 7.93 16 6 O -0.51 -8.94 13.84 5.29 0.07 -8.87 16 7 C -0.17 -2.00 5.83 -104.67 -0.61 -2.61 16 8 C -0.03 -0.23 9.45 -38.89 -0.37 -0.59 16 9 C -0.18 -1.03 10.09 -39.48 -0.40 -1.43 16 10 C 0.15 1.00 11.17 -17.49 -0.20 0.80 16 11 N -0.50 -5.38 10.18 -12.03 -0.12 -5.50 16 12 C 0.42 5.38 7.22 -154.37 -1.11 4.27 16 13 N -0.33 -4.69 3.10 -11.89 -0.04 -4.72 16 14 C 0.07 0.83 11.33 -16.80 -0.19 0.64 16 15 C -0.26 -2.83 10.80 -39.98 -0.43 -3.26 16 16 C 0.06 0.77 12.02 -17.33 -0.21 0.56 16 17 N -0.24 -3.89 9.54 30.65 0.29 -3.60 16 18 C -0.14 -2.34 3.52 -89.97 -0.32 -2.65 16 19 C 0.13 2.53 8.13 -8.51 -0.07 2.46 16 20 N -0.62 -15.59 3.63 -184.61 -0.67 -16.25 16 21 C -0.30 -8.92 11.03 -15.06 -0.17 -9.09 16 22 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 23 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 24 N -0.93 -29.81 13.70 55.49 0.76 -29.05 16 25 Si 1.06 26.98 25.49 -169.99 -4.33 22.64 16 26 H -0.29 -7.07 6.97 56.52 0.39 -6.67 16 27 H -0.28 -6.68 5.64 56.52 0.32 -6.36 16 28 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 29 C 0.12 2.42 5.17 -8.37 -0.04 2.38 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 3.97 7.71 -40.82 -0.31 3.65 16 34 H 0.15 0.75 7.57 -52.49 -0.40 0.35 16 35 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.19 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 44 H 0.05 0.98 6.88 -51.93 -0.36 0.62 16 45 H 0.05 1.13 6.18 -51.93 -0.32 0.81 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -38.57 375.58 -8.83 -47.40 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.09 Total: 2.44 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -4.10 Total: -0.98 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -0.04 Total: -68.30 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -4.33 Total: 22.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.57 -8.83 -47.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970252570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.332 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds