Wall clock time and date at job start Wed Apr 1 2020 00:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47906 * 2 1 4 4 N 1.46509 * 109.46851 * 119.99893 * 2 1 3 5 5 C 1.34774 * 119.99712 * 274.99585 * 4 2 1 6 6 O 1.21584 * 119.99955 * 359.97438 * 5 4 2 7 7 C 1.47595 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.39974 * 120.59190 * 326.92816 * 7 5 4 9 9 C 1.38351 * 118.34279 * 179.97438 * 8 7 5 10 10 C 1.38388 * 119.45574 * 359.97438 * 9 8 7 11 11 N 1.31838 * 121.18338 * 359.97438 * 10 9 8 12 12 C 1.32259 * 121.80471 * 359.76162 * 11 10 9 13 13 N 1.39351 * 119.80042 * 180.26548 * 12 11 10 14 14 C 1.35933 * 126.10776 * 319.44962 * 13 12 11 15 15 C 1.35240 * 107.60197 * 179.89574 * 14 13 12 16 16 C 1.40013 * 107.96872 * 0.36775 * 15 14 13 17 17 N 1.30781 * 108.38233 * 359.76688 * 16 15 14 18 18 C 1.53000 * 109.47235 * 239.99313 * 2 1 3 19 19 C 1.53488 * 114.21277 * 175.07546 * 18 2 1 20 20 N 1.47066 * 87.98724 * 220.34803 * 19 18 2 21 21 C 1.36939 * 136.05425 * 207.08613 * 20 19 18 22 22 H 1.08000 * 119.99863 * 7.45672 * 21 20 19 23 23 C 1.38812 * 119.99609 * 187.46344 * 21 20 19 24 24 N 1.31616 * 119.99700 * 195.03007 * 23 21 20 25 25 Si 1.86799 * 120.00217 * 15.02558 * 23 21 20 26 26 H 1.48496 * 109.47496 * 270.00129 * 25 23 21 27 27 H 1.48502 * 109.46887 * 30.00449 * 25 23 21 28 28 H 1.48503 * 109.47329 * 149.99895 * 25 23 21 29 29 C 1.47064 * 87.88547 * 27.34056 * 20 19 18 30 30 H 1.09008 * 109.46768 * 304.84904 * 1 2 3 31 31 H 1.09000 * 109.47238 * 64.84297 * 1 2 3 32 32 H 1.08997 * 109.47746 * 184.84980 * 1 2 3 33 33 H 0.96992 * 120.00216 * 94.99840 * 4 2 1 34 34 H 1.07995 * 120.82601 * 359.95273 * 8 7 5 35 35 H 1.07998 * 120.26995 * 180.02562 * 9 8 7 36 36 H 1.08002 * 119.40567 * 179.97438 * 10 9 8 37 37 H 1.07996 * 126.19942 * 0.02976 * 14 13 12 38 38 H 1.08000 * 126.01855 * 180.17174 * 15 14 13 39 39 H 1.08001 * 125.80831 * 179.74036 * 16 15 14 40 40 H 1.09003 * 113.41175 * 308.28021 * 18 2 1 41 41 H 1.08994 * 113.47092 * 105.56098 * 19 18 2 42 42 H 1.09006 * 113.51839 * 335.13929 * 19 18 2 43 43 H 0.96999 * 120.00574 * 354.93176 * 24 23 21 44 44 H 1.08996 * 113.46973 * 87.44036 * 29 20 19 45 45 H 1.09002 * 113.46715 * 217.88440 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3572 6 8 1.8584 1.1616 2.4115 7 6 2.6395 -0.7137 3.5622 8 6 2.3428 -2.0649 3.7761 9 6 2.8286 -2.6707 4.9211 10 6 3.5864 -1.9320 5.8128 11 7 3.8546 -0.6604 5.5908 12 6 3.4192 -0.0345 4.5100 13 7 3.7322 1.3092 4.3145 14 6 3.7423 2.2765 5.2695 15 6 4.0990 3.4366 4.6729 16 6 4.3057 3.1770 3.3127 17 7 4.0868 1.9057 3.0975 18 6 2.0400 -0.7214 -1.2491 19 6 3.5648 -0.6816 -1.4206 20 7 3.3455 -0.4677 -2.8590 21 6 4.0390 -0.7260 -4.0112 22 1 4.9453 -1.3122 -3.9760 23 6 3.5770 -0.2341 -5.2243 24 7 4.0553 -0.7125 -6.3533 25 14 2.2766 1.1065 -5.2543 26 1 0.9272 0.4869 -5.2749 27 1 2.4131 1.9556 -4.0437 28 1 2.4558 1.9429 -6.4682 29 6 2.0566 0.1513 -2.5150 30 1 -0.3633 0.5873 0.8434 31 1 -0.3634 0.4369 -0.9302 32 1 -0.3634 -1.0239 0.0869 33 1 2.2489 -1.6317 1.1528 34 1 1.7492 -2.6204 3.0652 35 1 2.6188 -3.7119 5.1170 36 1 3.9648 -2.4056 6.7066 37 1 3.5099 2.1424 6.3156 38 1 4.2027 4.3952 5.1593 39 1 4.5961 3.9031 2.5678 40 1 1.6001 -1.7089 -1.3889 41 1 4.0522 -1.6293 -1.1919 42 1 4.0365 0.1656 -0.9227 43 1 4.7818 -1.3550 -6.3388 44 1 2.1298 1.2184 -2.3054 45 1 1.2590 -0.0869 -3.2187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970252570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:33 Heat of formation + Delta-G solvation = 138.355856 kcal Electronic energy + Delta-G solvation = -29525.301055 eV Core-core repulsion = 25546.681022 eV Total energy + Delta-G solvation = -3978.620033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.60455 -41.34848 -40.71551 -39.67392 -36.31901 -34.75404 -34.48260 -33.93739 -31.84963 -31.28606 -30.38738 -29.57511 -26.95600 -26.09002 -25.25924 -25.05359 -22.91672 -22.06167 -21.96223 -21.53949 -21.18180 -19.55913 -19.45936 -18.70353 -17.96599 -17.29856 -16.93044 -16.50048 -16.17870 -16.07680 -15.89199 -15.56440 -15.40616 -15.24637 -15.02863 -14.82521 -14.46593 -14.31222 -14.19242 -13.69515 -13.67595 -13.55738 -13.35706 -13.15026 -13.06847 -12.62737 -12.41846 -11.83477 -11.78177 -11.74812 -11.53079 -11.37534 -11.21468 -11.07524 -10.99668 -10.86565 -10.63309 -10.25547 -9.97766 -9.40841 -9.27203 -8.64629 -5.49155 -0.58587 -0.09467 1.02411 1.23896 1.37950 1.50876 1.64963 1.73276 1.89547 2.06021 2.51251 2.62013 2.98462 3.13726 3.30180 3.41048 3.50516 3.68694 3.80708 3.85767 3.92839 4.03695 4.17847 4.19371 4.28579 4.39846 4.48111 4.58103 4.59232 4.63101 4.72210 4.72880 4.75923 4.84504 4.85874 4.97201 5.02953 5.04423 5.17016 5.27625 5.37425 5.42796 5.51444 5.63629 5.93205 6.10439 6.42511 6.53004 6.67752 6.78675 7.23212 7.30635 8.25966 8.86870 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014612 B = 0.003000 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.745705 B = 9330.254517 C =10051.641992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.061 0.939 4 N -0.703 5.703 5 C 0.566 3.434 6 O -0.551 6.551 7 C -0.194 4.194 8 C -0.026 4.026 9 C -0.161 4.161 10 C 0.144 3.856 11 N -0.519 5.519 12 C 0.379 3.621 13 N -0.338 5.338 14 C 0.061 3.939 15 C -0.258 4.258 16 C 0.043 3.957 17 N -0.295 5.295 18 C -0.101 4.101 19 C 0.125 3.875 20 N -0.656 5.656 21 C -0.295 4.295 22 H 0.048 0.952 23 C -0.082 4.082 24 N -0.967 5.967 25 Si 1.099 2.901 26 H -0.268 1.268 27 H -0.261 1.261 28 H -0.302 1.302 29 C 0.106 3.894 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.179 0.821 35 H 0.196 0.804 36 H 0.209 0.791 37 H 0.198 0.802 38 H 0.183 0.817 39 H 0.204 0.796 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.029 0.971 43 H 0.247 0.753 44 H 0.047 0.953 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.339 -3.226 31.712 32.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 H 0.080 0.920 4 N -0.354 5.354 5 C 0.352 3.648 6 O -0.429 6.429 7 C -0.202 4.202 8 C -0.052 4.052 9 C -0.181 4.181 10 C -0.014 4.014 11 N -0.232 5.232 12 C 0.153 3.847 13 N -0.117 5.117 14 C -0.080 4.080 15 C -0.286 4.286 16 C -0.146 4.146 17 N -0.113 5.113 18 C -0.121 4.121 19 C -0.001 4.001 20 N -0.384 5.384 21 C -0.423 4.423 22 H 0.066 0.934 23 C -0.274 4.274 24 N -0.612 5.612 25 Si 0.924 3.076 26 H -0.194 1.194 27 H -0.186 1.186 28 H -0.230 1.230 29 C -0.019 4.019 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.196 0.804 35 H 0.213 0.787 36 H 0.226 0.774 37 H 0.215 0.785 38 H 0.200 0.800 39 H 0.221 0.779 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.890 -2.077 30.297 31.376 hybrid contribution 1.521 -0.779 0.336 1.742 sum -6.369 -2.856 30.633 31.418 Atomic orbital electron populations 1.22066 0.93262 1.03325 1.02331 1.20709 0.95060 0.95799 0.82299 0.92033 1.45729 1.66886 1.14392 1.08424 1.17993 0.77373 0.86107 0.83356 1.90784 1.50388 1.16464 1.85234 1.20724 1.04124 0.97401 0.97967 1.22206 0.94806 0.90079 0.98122 1.22671 0.97974 1.04005 0.93400 1.23614 0.91710 0.86335 0.99783 1.67148 1.22690 1.13423 1.19941 1.17783 0.92601 0.82672 0.91675 1.45620 1.53957 1.05146 1.07000 1.23244 1.00257 0.88023 0.96471 1.21935 1.12770 1.00250 0.93652 1.24530 0.98431 0.93369 0.98272 1.77530 1.20488 1.10818 1.02473 1.23252 0.95606 1.00526 0.92696 1.22462 0.95436 0.98437 0.83722 1.46322 1.20047 1.70382 1.01638 1.20013 1.08107 1.28880 0.85266 0.93388 1.27068 1.06140 1.03813 0.90366 1.71006 1.28649 1.34149 1.27433 0.83338 0.74213 0.74569 0.75477 1.19375 1.18560 1.23006 1.22821 0.88334 0.96266 0.94527 0.93227 0.90951 0.90151 0.75227 0.80385 0.78720 0.77402 0.78539 0.79995 0.77944 0.86019 0.93198 0.95316 0.94403 0.93498 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.48 71.98 0.68 -2.72 16 2 C 0.17 4.51 2.34 44.99 0.11 4.61 16 3 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 4 N -0.70 -16.36 4.88 -445.64 -2.17 -18.53 16 5 C 0.57 15.74 6.75 86.71 0.59 16.33 16 6 O -0.55 -19.79 13.84 -3.98 -0.06 -19.84 16 7 C -0.19 -4.37 5.83 -19.89 -0.12 -4.49 16 8 C -0.03 -0.31 9.45 22.72 0.21 -0.09 16 9 C -0.16 -1.05 10.09 22.33 0.23 -0.83 16 10 C 0.14 1.45 11.17 84.73 0.95 2.40 16 11 N -0.52 -10.36 10.18 -191.97 -1.95 -12.31 16 12 C 0.38 9.69 7.22 133.27 0.96 10.65 16 13 N -0.34 -9.87 3.10 -191.54 -0.59 -10.46 16 14 C 0.06 1.43 11.33 83.37 0.94 2.37 16 15 C -0.26 -5.66 10.80 22.01 0.24 -5.42 16 16 C 0.04 1.16 12.02 85.28 1.02 2.19 16 17 N -0.30 -9.83 9.54 -56.96 -0.54 -10.38 16 18 C -0.10 -3.12 3.52 -10.37 -0.04 -3.16 16 19 C 0.12 4.89 8.13 83.17 0.68 5.57 16 20 N -0.66 -32.50 3.63 -737.97 -2.68 -35.17 16 21 C -0.30 -17.67 11.03 84.03 0.93 -16.74 16 22 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 23 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 24 N -0.97 -63.60 13.70 21.65 0.30 -63.30 16 25 Si 1.10 54.31 25.49 68.60 1.75 56.06 16 26 H -0.27 -12.07 6.97 99.48 0.69 -11.38 16 27 H -0.26 -11.85 5.64 99.48 0.56 -11.29 16 28 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 29 C 0.11 4.27 5.17 83.27 0.43 4.70 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.41 7.04 7.71 -92.71 -0.71 6.32 16 34 H 0.18 0.95 7.57 -2.91 -0.02 0.93 16 35 H 0.20 -0.45 8.06 -2.91 -0.02 -0.48 16 36 H 0.21 0.35 8.06 -2.91 -0.02 0.32 16 37 H 0.20 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.20 4.38 8.06 -2.91 -0.02 4.35 16 40 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.20 8.11 -2.38 -0.02 1.18 16 43 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 44 H 0.05 1.92 6.88 -2.39 -0.02 1.90 16 45 H 0.06 2.23 6.18 -2.39 -0.01 2.22 16 Total: -1.00 -90.14 375.58 2.43 -87.70 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.11 Total: 15.39 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 8.28 Total: 10.84 kcal Atomic # 7 Polarization: -142.51 SS G_CDS: -7.64 Total: -150.16 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 14 Polarization: 54.31 SS G_CDS: 1.75 Total: 56.06 kcal Total: -90.14 2.43 -87.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970252570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.058 kcal (2) G-P(sol) polarization free energy of solvation -90.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds