Wall clock time and date at job start Wed Apr 1 2020 00:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47546 * 2 1 4 4 N 1.46506 * 109.47038 * 239.99888 * 2 1 3 5 5 C 1.34779 * 119.99936 * 85.00007 * 4 2 1 6 6 O 1.21585 * 119.99980 * 0.02562 * 5 4 2 7 7 C 1.47584 * 119.99859 * 180.27547 * 5 4 2 8 8 C 1.39977 * 120.59872 * 318.26373 * 7 5 4 9 9 C 1.38349 * 118.34569 * 179.71413 * 8 7 5 10 10 C 1.38388 * 119.45893 * 0.55939 * 9 8 7 11 11 N 1.31851 * 121.17683 * 359.69670 * 10 9 8 12 12 C 1.32256 * 121.80400 * 0.02649 * 11 10 9 13 13 N 1.39352 * 119.79557 * 179.97438 * 12 11 10 14 14 C 1.35934 * 126.10976 * 332.46234 * 13 12 11 15 15 C 1.35231 * 107.60523 * 179.87153 * 14 13 12 16 16 C 1.40019 * 107.97052 * 0.38536 * 15 14 13 17 17 N 1.30785 * 108.37756 * 359.76061 * 16 15 14 18 18 C 1.53001 * 109.47340 * 120.00118 * 2 1 3 19 19 C 1.53950 * 113.74010 * 282.05566 * 18 2 1 20 20 N 1.47818 * 86.03543 * 222.08056 * 19 18 2 21 21 C 1.36934 * 134.45507 * 204.64388 * 20 19 18 22 22 H 1.07999 * 119.99668 * 179.87219 * 21 20 19 23 23 C 1.38813 * 120.00100 * 359.86715 * 21 20 19 24 24 N 1.31621 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99980 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47059 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46993 * 119.99669 * 25 23 21 28 28 H 1.48496 * 109.47057 * 240.00051 * 25 23 21 29 29 C 1.47586 * 91.05033 * 24.54969 * 20 19 18 30 30 H 1.09005 * 109.46992 * 303.94994 * 1 2 3 31 31 H 1.09002 * 109.46971 * 63.94929 * 1 2 3 32 32 H 1.08996 * 109.47548 * 183.95185 * 1 2 3 33 33 H 0.96994 * 119.99973 * 264.99950 * 4 2 1 34 34 H 1.08005 * 120.82339 * 359.96701 * 8 7 5 35 35 H 1.08007 * 120.27139 * 180.28051 * 9 8 7 36 36 H 1.07997 * 119.41276 * 179.72378 * 10 9 8 37 37 H 1.08001 * 126.19887 * 359.97438 * 14 13 12 38 38 H 1.08006 * 126.01714 * 180.14582 * 15 14 13 39 39 H 1.07998 * 125.81002 * 179.71857 * 16 15 14 40 40 H 1.09000 * 112.94447 * 53.64715 * 18 2 1 41 41 H 1.09000 * 113.76569 * 336.34891 * 19 18 2 42 42 H 1.09005 * 113.76671 * 107.74461 * 19 18 2 43 43 H 0.96994 * 119.99821 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.76774 * 221.15285 * 29 20 19 45 45 H 1.08997 * 113.87010 * 89.76390 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4117 7 6 2.6331 -0.7155 -3.5637 8 6 3.6943 -1.6248 -3.4823 9 6 4.1084 -2.2565 -4.6413 10 6 3.4765 -1.9661 -5.8378 11 7 2.4821 -1.1020 -5.8923 12 6 2.0438 -0.4747 -4.8136 13 7 0.9901 0.4310 -4.9195 14 6 0.6658 1.1575 -6.0217 15 6 -0.4156 1.9084 -5.7130 16 6 -0.7604 1.6428 -4.3822 17 7 0.0793 0.7599 -3.9070 18 6 2.0400 -0.7213 1.2492 19 6 1.9691 0.1310 2.5293 20 7 3.3058 -0.4159 2.8445 21 6 4.0137 -0.6116 4.0002 22 1 5.0025 -1.0443 3.9609 23 6 3.4606 -0.2539 5.2220 24 7 2.2554 0.2730 5.2698 25 14 4.4261 -0.5216 6.7986 26 1 5.7442 -1.1245 6.4755 27 1 4.6322 0.7816 7.4802 28 1 3.6699 -1.4341 7.6933 29 6 3.5696 -0.6682 1.4145 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3634 -1.0252 0.0708 33 1 2.2489 -1.6318 -1.1526 34 1 4.1750 -1.8311 -2.5373 35 1 4.9213 -2.9672 -4.6134 36 1 3.8033 -2.4564 -6.7428 37 1 1.1780 1.1372 -6.9723 38 1 -0.9218 2.5953 -6.3752 39 1 -1.5798 2.0913 -3.8401 40 1 1.6207 -1.7209 1.3637 41 1 1.9666 1.2049 2.3425 42 1 1.1897 -0.1832 3.2237 43 1 1.8691 0.5233 6.1236 44 1 4.0657 -1.6191 1.2205 45 1 4.0385 0.1694 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970252571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:36 Heat of formation + Delta-G solvation = 160.585880 kcal Electronic energy + Delta-G solvation = -29331.081570 eV Core-core repulsion = 25353.425503 eV Total energy + Delta-G solvation = -3977.656067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77720 -40.37444 -39.30641 -37.88589 -34.76915 -33.90365 -33.13725 -32.07596 -30.55750 -30.36366 -29.46916 -27.44728 -25.32166 -24.62020 -24.35480 -23.85666 -21.77981 -21.22423 -20.93642 -20.31774 -19.28323 -18.60104 -17.52295 -17.07007 -16.71939 -15.89756 -15.69071 -15.49929 -14.92898 -14.78811 -14.55375 -14.43179 -13.95565 -13.83411 -13.71768 -13.55490 -13.42469 -13.05371 -12.88773 -12.78153 -12.27448 -11.94333 -11.53530 -11.39472 -11.21434 -10.90205 -10.84883 -10.68501 -10.65790 -10.36746 -10.29416 -10.21311 -9.95452 -9.79320 -9.59209 -9.39861 -9.28782 -8.80012 -8.70935 -8.53963 -6.86529 -5.76131 -3.08217 0.20411 0.59094 1.89007 1.98577 2.72193 2.83343 3.16848 3.38830 3.43814 3.45733 3.46635 3.97127 4.20177 4.42168 4.45600 4.50786 4.63128 4.80993 4.89339 5.03352 5.16157 5.25998 5.28527 5.43661 5.47546 5.56109 5.58624 5.61286 5.72824 5.80347 5.89927 5.94870 6.05673 6.16534 6.32436 6.39068 6.43038 6.54647 6.62707 6.66675 6.85853 6.89283 7.14927 7.24202 7.37978 7.57350 7.61645 7.68773 7.98969 8.39905 9.05347 9.71606 10.61075 11.41136 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.002604 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.661536 B =10749.611544 C =12001.069473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.086 0.914 4 N -0.712 5.712 5 C 0.568 3.432 6 O -0.509 6.509 7 C -0.172 4.172 8 C -0.026 4.026 9 C -0.187 4.187 10 C 0.146 3.854 11 N -0.507 5.507 12 C 0.414 3.586 13 N -0.329 5.329 14 C 0.069 3.931 15 C -0.259 4.259 16 C 0.056 3.944 17 N -0.238 5.238 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.223 4.223 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.395 0.605 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.190 0.810 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -4.310 -25.560 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.104 0.896 4 N -0.362 5.362 5 C 0.352 3.648 6 O -0.383 6.383 7 C -0.180 4.180 8 C -0.052 4.052 9 C -0.208 4.208 10 C -0.013 4.013 11 N -0.219 5.219 12 C 0.185 3.815 13 N -0.107 5.107 14 C -0.071 4.071 15 C -0.287 4.287 16 C -0.134 4.134 17 N -0.055 5.055 18 C -0.167 4.167 19 C 0.051 3.949 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.229 0.771 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.194 0.806 38 H 0.171 0.829 39 H 0.206 0.794 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.208 -3.984 -25.010 25.422 hybrid contribution 0.894 -0.135 0.874 1.258 sum -1.314 -4.119 -24.136 24.520 Atomic orbital electron populations 1.22089 0.95312 1.01740 1.02345 1.21078 0.93965 0.97219 0.82563 0.89569 1.45981 1.67026 1.13673 1.09503 1.17546 0.78221 0.86743 0.82300 1.90805 1.48198 1.15109 1.84207 1.20700 1.00139 1.02373 0.94809 1.21828 0.92654 0.90593 1.00152 1.22140 1.02931 1.02667 0.93053 1.22731 0.88924 0.91230 0.98384 1.67018 1.15246 1.09591 1.30076 1.17490 0.86549 0.88596 0.88840 1.45567 1.23153 1.31788 1.10230 1.22769 0.97612 0.94147 0.92526 1.21613 1.01434 1.07974 0.97688 1.24143 0.98397 0.96423 0.94486 1.77759 1.00743 1.18102 1.08856 1.23864 0.97461 1.00746 0.94634 1.22221 0.89554 0.93916 0.89258 1.45999 1.16173 1.72089 0.99591 1.19060 0.98330 1.34840 0.82796 0.90301 1.24785 0.97058 1.01187 0.97490 1.69820 1.15150 1.47488 1.24299 0.86060 0.78909 0.77355 0.83518 1.20520 1.21748 1.21695 1.22532 0.93174 0.97521 0.86869 0.91422 0.92172 0.93009 0.77134 0.83006 0.83297 0.81240 0.80628 0.82859 0.79359 0.89390 0.95418 0.90707 0.93678 0.94264 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.43 37.15 0.35 -1.99 16 2 C 0.16 2.48 2.29 -67.93 -0.16 2.32 16 3 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 4 N -0.71 -9.72 4.89 -54.83 -0.27 -9.99 16 5 C 0.57 8.57 6.35 -12.45 -0.08 8.49 16 6 O -0.51 -9.47 13.90 5.29 0.07 -9.40 16 7 C -0.17 -2.16 5.77 -104.67 -0.60 -2.77 16 8 C -0.03 -0.23 9.52 -38.89 -0.37 -0.60 16 9 C -0.19 -1.21 10.09 -39.49 -0.40 -1.61 16 10 C 0.15 1.06 11.17 -17.49 -0.20 0.86 16 11 N -0.51 -5.48 10.02 -12.03 -0.12 -5.60 16 12 C 0.41 5.42 7.38 -154.37 -1.14 4.29 16 13 N -0.33 -4.61 3.45 -11.89 -0.04 -4.65 16 14 C 0.07 0.79 11.21 -16.80 -0.19 0.60 16 15 C -0.26 -2.68 10.80 -39.99 -0.43 -3.11 16 16 C 0.06 0.67 12.02 -17.33 -0.21 0.47 16 17 N -0.24 -3.58 8.79 30.65 0.27 -3.31 16 18 C -0.15 -2.64 3.35 -89.69 -0.30 -2.94 16 19 C 0.18 4.11 7.03 -2.83 -0.02 4.09 16 20 N -0.61 -15.73 3.70 -177.67 -0.66 -16.39 16 21 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.40 11.39 55.49 0.63 -26.77 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.13 2.51 8.38 -2.96 -0.02 2.48 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 4.44 8.21 -40.82 -0.34 4.10 16 34 H 0.15 1.05 8.01 -52.48 -0.42 0.63 16 35 H 0.15 0.48 8.06 -52.48 -0.42 0.06 16 36 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.03 0.67 8.04 -51.93 -0.42 0.26 16 42 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -36.70 382.14 -9.53 -46.23 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.13 Total: 3.11 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -4.02 Total: 3.80 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.19 Total: -66.71 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.70 -9.53 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970252571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.814 kcal (2) G-P(sol) polarization free energy of solvation -36.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds