Wall clock time and date at job start Wed Apr 1 2020 00:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47546 * 2 1 4 4 N 1.46506 * 109.47038 * 239.99888 * 2 1 3 5 5 C 1.34779 * 119.99936 * 85.00007 * 4 2 1 6 6 O 1.21585 * 119.99980 * 0.02562 * 5 4 2 7 7 C 1.47584 * 119.99859 * 180.27547 * 5 4 2 8 8 C 1.39977 * 120.59872 * 318.26373 * 7 5 4 9 9 C 1.38349 * 118.34569 * 179.71413 * 8 7 5 10 10 C 1.38388 * 119.45893 * 0.55939 * 9 8 7 11 11 N 1.31851 * 121.17683 * 359.69670 * 10 9 8 12 12 C 1.32256 * 121.80400 * 0.02649 * 11 10 9 13 13 N 1.39352 * 119.79557 * 179.97438 * 12 11 10 14 14 C 1.35934 * 126.10976 * 332.46234 * 13 12 11 15 15 C 1.35231 * 107.60523 * 179.87153 * 14 13 12 16 16 C 1.40019 * 107.97052 * 0.38536 * 15 14 13 17 17 N 1.30785 * 108.37756 * 359.76061 * 16 15 14 18 18 C 1.53001 * 109.47340 * 120.00118 * 2 1 3 19 19 C 1.53950 * 113.74010 * 282.05566 * 18 2 1 20 20 N 1.47818 * 86.03543 * 222.08056 * 19 18 2 21 21 C 1.36934 * 134.45507 * 204.64388 * 20 19 18 22 22 H 1.07999 * 119.99668 * 179.87219 * 21 20 19 23 23 C 1.38813 * 120.00100 * 359.86715 * 21 20 19 24 24 N 1.31621 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99980 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47059 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46993 * 119.99669 * 25 23 21 28 28 H 1.48496 * 109.47057 * 240.00051 * 25 23 21 29 29 C 1.47586 * 91.05033 * 24.54969 * 20 19 18 30 30 H 1.09005 * 109.46992 * 303.94994 * 1 2 3 31 31 H 1.09002 * 109.46971 * 63.94929 * 1 2 3 32 32 H 1.08996 * 109.47548 * 183.95185 * 1 2 3 33 33 H 0.96994 * 119.99973 * 264.99950 * 4 2 1 34 34 H 1.08005 * 120.82339 * 359.96701 * 8 7 5 35 35 H 1.08007 * 120.27139 * 180.28051 * 9 8 7 36 36 H 1.07997 * 119.41276 * 179.72378 * 10 9 8 37 37 H 1.08001 * 126.19887 * 359.97438 * 14 13 12 38 38 H 1.08006 * 126.01714 * 180.14582 * 15 14 13 39 39 H 1.07998 * 125.81002 * 179.71857 * 16 15 14 40 40 H 1.09000 * 112.94447 * 53.64715 * 18 2 1 41 41 H 1.09000 * 113.76569 * 336.34891 * 19 18 2 42 42 H 1.09005 * 113.76671 * 107.74461 * 19 18 2 43 43 H 0.96994 * 119.99821 * 180.02562 * 24 23 21 44 44 H 1.08998 * 113.76774 * 221.15285 * 29 20 19 45 45 H 1.08997 * 113.87010 * 89.76390 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4117 7 6 2.6331 -0.7155 -3.5637 8 6 3.6943 -1.6248 -3.4823 9 6 4.1084 -2.2565 -4.6413 10 6 3.4765 -1.9661 -5.8378 11 7 2.4821 -1.1020 -5.8923 12 6 2.0438 -0.4747 -4.8136 13 7 0.9901 0.4310 -4.9195 14 6 0.6658 1.1575 -6.0217 15 6 -0.4156 1.9084 -5.7130 16 6 -0.7604 1.6428 -4.3822 17 7 0.0793 0.7599 -3.9070 18 6 2.0400 -0.7213 1.2492 19 6 1.9691 0.1310 2.5293 20 7 3.3058 -0.4159 2.8445 21 6 4.0137 -0.6116 4.0002 22 1 5.0025 -1.0443 3.9609 23 6 3.4606 -0.2539 5.2220 24 7 2.2554 0.2730 5.2698 25 14 4.4261 -0.5216 6.7986 26 1 5.7442 -1.1245 6.4755 27 1 4.6322 0.7816 7.4802 28 1 3.6699 -1.4341 7.6933 29 6 3.5696 -0.6682 1.4145 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3634 -1.0252 0.0708 33 1 2.2489 -1.6318 -1.1526 34 1 4.1750 -1.8311 -2.5373 35 1 4.9213 -2.9672 -4.6134 36 1 3.8033 -2.4564 -6.7428 37 1 1.1780 1.1372 -6.9723 38 1 -0.9218 2.5953 -6.3752 39 1 -1.5798 2.0913 -3.8401 40 1 1.6207 -1.7209 1.3637 41 1 1.9666 1.2049 2.3425 42 1 1.1897 -0.1832 3.2237 43 1 1.8691 0.5233 6.1236 44 1 4.0657 -1.6191 1.2205 45 1 4.0385 0.1694 0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970252571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:35 Heat of formation + Delta-G solvation = 136.457203 kcal Electronic energy + Delta-G solvation = -29332.127868 eV Core-core repulsion = 25353.425503 eV Total energy + Delta-G solvation = -3978.702365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60407 -41.26236 -40.49415 -39.39828 -36.15892 -34.69923 -34.22494 -33.79506 -31.71200 -31.28668 -30.33985 -29.31934 -26.69420 -26.00031 -25.44261 -25.08144 -23.12917 -22.08685 -21.91513 -21.45508 -20.83241 -19.42844 -18.82178 -18.51657 -17.86678 -17.06021 -16.77625 -16.45876 -16.35859 -15.98757 -15.77478 -15.57032 -15.37177 -15.04747 -14.77012 -14.55875 -14.40163 -14.16895 -14.03569 -13.66872 -13.50829 -13.36205 -13.24899 -13.08033 -12.96422 -12.71134 -12.36877 -12.00616 -11.81886 -11.71659 -11.58944 -11.41963 -11.20784 -11.13980 -11.00771 -10.88168 -10.63306 -10.20528 -9.91680 -9.32663 -8.92570 -7.90732 -5.24449 -0.54907 -0.07389 1.10444 1.21615 1.45012 1.46462 1.56480 1.78351 1.91191 2.12224 2.46914 2.65646 3.28701 3.29454 3.38673 3.42694 3.62219 3.82842 3.87370 3.95699 3.98041 4.06850 4.20356 4.28051 4.42190 4.48370 4.57121 4.59257 4.73740 4.76844 4.84541 4.86605 4.89420 4.96197 5.01670 5.04657 5.11821 5.25163 5.31095 5.40439 5.52912 5.56324 5.64276 5.65062 5.93322 6.09492 6.41483 6.59518 6.82105 6.91427 7.30847 7.60491 8.56275 9.26505 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018276 B = 0.002604 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.661536 B =10749.611544 C =12001.069473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.171 3.829 3 H 0.058 0.942 4 N -0.701 5.701 5 C 0.569 3.431 6 O -0.552 6.552 7 C -0.200 4.200 8 C -0.026 4.026 9 C -0.167 4.167 10 C 0.149 3.851 11 N -0.521 5.521 12 C 0.385 3.615 13 N -0.343 5.343 14 C 0.056 3.944 15 C -0.256 4.256 16 C 0.042 3.958 17 N -0.283 5.283 18 C -0.109 4.109 19 C 0.171 3.829 20 N -0.643 5.643 21 C -0.234 4.234 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.264 1.264 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.129 3.871 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.212 0.788 37 H 0.198 0.802 38 H 0.184 0.816 39 H 0.209 0.791 40 H 0.104 0.896 41 H 0.009 0.991 42 H 0.046 0.954 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -6.660 -27.640 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.352 5.352 5 C 0.355 3.645 6 O -0.429 6.429 7 C -0.208 4.208 8 C -0.052 4.052 9 C -0.187 4.187 10 C -0.009 4.009 11 N -0.234 5.234 12 C 0.158 3.842 13 N -0.122 5.122 14 C -0.083 4.083 15 C -0.284 4.284 16 C -0.147 4.147 17 N -0.101 5.101 18 C -0.129 4.129 19 C 0.045 3.955 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.217 1.217 29 C 0.005 3.995 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.188 0.812 35 H 0.210 0.790 36 H 0.228 0.772 37 H 0.215 0.785 38 H 0.201 0.799 39 H 0.225 0.775 40 H 0.122 0.878 41 H 0.027 0.973 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.387 -6.375 -27.129 27.871 hybrid contribution 0.412 0.554 1.385 1.547 sum 0.026 -5.821 -25.745 26.395 Atomic orbital electron populations 1.21994 0.94486 1.02509 1.01642 1.20660 0.94421 0.95635 0.82719 0.92387 1.45741 1.66800 1.14194 1.08506 1.17954 0.77214 0.86304 0.83027 1.90772 1.50067 1.17149 1.84907 1.20580 1.02334 1.04514 0.93398 1.22143 0.91366 0.89591 1.02088 1.22611 1.02794 1.01763 0.91544 1.23586 0.87292 0.89641 1.00427 1.67107 1.16566 1.10423 1.29293 1.17778 0.87161 0.89568 0.89704 1.45774 1.23477 1.32467 1.10467 1.23286 0.98097 0.94004 0.92924 1.21989 1.01123 1.07955 0.97295 1.24655 0.98493 0.95971 0.95574 1.77653 1.02077 1.19805 1.10539 1.23457 0.96290 1.00256 0.92879 1.22111 0.88301 0.93633 0.91445 1.46427 1.17041 1.72270 1.01240 1.19483 0.98687 1.34020 0.84066 0.89690 1.25660 0.98148 1.01678 1.00780 1.70015 1.16756 1.48962 1.24568 0.84999 0.78164 0.76815 0.79282 1.18775 1.22256 1.21684 1.22667 0.94582 0.98575 0.83701 0.92082 0.92919 0.91425 0.75382 0.81181 0.79037 0.77187 0.78543 0.79874 0.77479 0.87758 0.97302 0.93593 0.94285 0.91536 0.95067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.43 71.98 0.68 -3.82 16 2 C 0.17 5.49 2.29 44.99 0.10 5.59 16 3 H 0.06 2.23 7.49 -2.39 -0.02 2.21 16 4 N -0.70 -18.75 4.89 -445.65 -2.18 -20.93 16 5 C 0.57 17.34 6.35 86.71 0.55 17.89 16 6 O -0.55 -21.43 13.90 -3.98 -0.06 -21.49 16 7 C -0.20 -4.88 5.77 -19.90 -0.11 -5.00 16 8 C -0.03 -0.38 9.52 22.72 0.22 -0.16 16 9 C -0.17 -1.42 10.09 22.33 0.23 -1.20 16 10 C 0.15 1.59 11.17 84.73 0.95 2.54 16 11 N -0.52 -10.31 10.02 -191.97 -1.92 -12.24 16 12 C 0.39 9.94 7.38 133.27 0.98 10.92 16 13 N -0.34 -9.77 3.45 -191.54 -0.66 -10.43 16 14 C 0.06 1.28 11.21 83.36 0.93 2.22 16 15 C -0.26 -5.20 10.80 22.01 0.24 -4.96 16 16 C 0.04 1.05 12.02 85.28 1.02 2.08 16 17 N -0.28 -8.87 8.79 -56.95 -0.50 -9.37 16 18 C -0.11 -3.87 3.35 -10.13 -0.03 -3.91 16 19 C 0.17 8.25 7.03 86.44 0.61 8.86 16 20 N -0.64 -33.24 3.70 -716.03 -2.65 -35.89 16 21 C -0.23 -13.24 10.70 84.03 0.90 -12.34 16 22 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.95 -58.42 11.39 21.65 0.25 -58.17 16 25 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 29 C 0.13 5.04 8.38 86.49 0.72 5.77 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.90 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 8.43 8.21 -92.71 -0.76 7.67 16 34 H 0.17 1.76 8.01 -2.91 -0.02 1.74 16 35 H 0.19 0.02 8.06 -2.91 -0.02 -0.01 16 36 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 37 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.21 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.01 0.47 8.04 -2.39 -0.02 0.45 16 42 H 0.05 2.46 7.16 -2.38 -0.02 2.45 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 45 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -84.40 382.14 3.01 -81.40 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.25 Total: 18.11 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 8.45 Total: 20.90 kcal Atomic # 7 Polarization: -139.36 SS G_CDS: -7.67 Total: -147.03 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.06 Total: -21.49 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -84.40 3.01 -81.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970252571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.853 kcal (2) G-P(sol) polarization free energy of solvation -84.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds