Wall clock time and date at job start Wed Apr 1 2020 00:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21553 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.47858 * 120.00028 * 179.97438 * 5 4 2 8 8 C 1.39659 * 120.08830 * 359.72930 * 7 5 4 9 9 C 1.38012 * 120.09578 * 179.78949 * 8 7 5 10 10 C 1.38160 * 120.27780 * 0.46025 * 9 8 7 11 11 C 1.39412 * 120.16669 * 359.79651 * 10 9 8 12 12 C 1.48424 * 120.04849 * 179.97438 * 11 10 9 13 13 N 1.33975 * 125.64881 * 359.96941 * 12 11 10 14 14 C 1.30678 * 109.77814 * 179.97438 * 13 12 11 15 15 N 1.34519 * 108.29613 * 359.97438 * 14 13 12 16 16 H 0.97000 * 126.74236 * 180.02562 * 15 14 13 17 17 N 1.31493 * 125.65258 * 179.66561 * 12 11 10 18 18 C 1.39088 * 119.90424 * 359.97005 * 11 10 9 19 19 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 20 20 C 1.53499 * 114.20194 * 175.68147 * 19 2 1 21 21 N 1.47073 * 87.98271 * 220.34656 * 20 19 2 22 22 C 1.36933 * 136.05439 * 207.08381 * 21 20 19 23 23 H 1.07997 * 120.00623 * 7.51587 * 22 21 20 24 24 C 1.38811 * 119.99801 * 187.50516 * 22 21 20 25 25 N 1.31620 * 120.00313 * 174.40470 * 24 22 21 26 26 Si 1.86807 * 120.00107 * 354.40682 * 24 22 21 27 27 H 1.48500 * 109.46966 * 174.95313 * 26 24 22 28 28 H 1.48493 * 109.47091 * 294.95489 * 26 24 22 29 29 H 1.48504 * 109.46855 * 54.95521 * 26 24 22 30 30 C 1.47068 * 87.88530 * 27.34485 * 21 20 19 31 31 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 32 32 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 33 33 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 34 34 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 35 35 H 1.08000 * 119.94767 * 0.02562 * 8 7 5 36 36 H 1.08004 * 119.86263 * 180.21067 * 9 8 7 37 37 H 1.07997 * 119.92131 * 179.76316 * 10 9 8 38 38 H 1.08010 * 125.85278 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.13780 * 179.97438 * 18 11 10 40 40 H 1.08999 * 113.41397 * 308.87998 * 19 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 20 19 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 20 19 2 43 43 H 0.97005 * 119.99470 * 355.01014 * 25 24 22 44 44 H 1.08994 * 113.47031 * 87.43931 * 30 21 20 45 45 H 1.09002 * 113.46631 * 217.88470 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1611 2.4118 7 6 2.6395 -0.7154 3.5645 8 6 2.9662 -2.0719 3.5054 9 6 3.4299 -2.7217 4.6313 10 6 3.5646 -2.0381 5.8243 11 6 3.2367 -0.6851 5.8973 12 6 3.3819 0.0466 7.1805 13 7 3.8152 -0.4788 8.3342 14 6 3.8215 0.4399 9.2636 15 7 3.3873 1.5919 8.7217 16 1 3.2873 2.4444 9.1736 17 7 3.1119 1.3192 7.3719 18 6 2.7733 -0.0218 4.7660 19 6 2.0399 -0.7213 -1.2493 20 6 3.5660 -0.6940 -1.4128 21 7 3.3557 -0.4731 -2.8516 22 6 4.0528 -0.7331 -4.0012 23 1 4.9534 -1.3279 -3.9639 24 6 3.6017 -0.2323 -5.2147 25 7 4.3275 -0.3877 -6.3015 26 14 1.9643 0.6624 -5.3052 27 1 1.7699 1.2015 -6.6751 28 1 0.8651 -0.2833 -4.9848 29 1 1.9563 1.7802 -4.3275 30 6 2.0705 0.1558 -2.5118 31 1 -0.3633 -1.0243 0.0831 32 1 -0.3633 0.5841 0.8456 33 1 -0.3633 0.4403 -0.9286 34 1 2.2491 -1.6318 1.1526 35 1 2.8594 -2.6122 2.5764 36 1 3.6847 -3.7701 4.5805 37 1 3.9244 -2.5532 6.7027 38 1 4.1243 0.2985 10.2907 39 1 2.5177 1.0262 4.8184 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970261175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:15 Heat of formation + Delta-G solvation = 141.304780 kcal Electronic energy + Delta-G solvation = -28107.132042 eV Core-core repulsion = 24128.639883 eV Total energy + Delta-G solvation = -3978.492158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50801 -40.40832 -39.08642 -38.12976 -35.06453 -33.70753 -32.47657 -32.27402 -31.72222 -30.58964 -29.93258 -27.80131 -25.37435 -24.66553 -24.34421 -23.57439 -22.56464 -21.46325 -20.86753 -20.17202 -19.49146 -18.87036 -17.74811 -17.47017 -16.52033 -16.20328 -15.93062 -15.69848 -15.46492 -15.17284 -14.90303 -14.48713 -14.15808 -13.93583 -13.86665 -13.61472 -13.28480 -13.08946 -12.87250 -12.62528 -12.28200 -12.07563 -11.97018 -11.76468 -11.61761 -11.24974 -11.06141 -10.93987 -10.70643 -10.56708 -10.43848 -10.33541 -10.15480 -9.95579 -9.31366 -9.18635 -9.13601 -8.99856 -8.90319 -8.88043 -7.15112 -6.28235 -3.22123 0.37594 0.77831 1.33036 2.15608 2.38112 2.95021 3.06319 3.41916 3.46604 3.51556 3.66757 3.69505 4.10924 4.39577 4.49124 4.61311 4.64107 4.72113 4.73612 4.92537 4.98660 5.10026 5.16632 5.31891 5.42311 5.49763 5.56405 5.57868 5.67548 5.75257 5.76982 5.89248 5.99030 6.03480 6.08749 6.11196 6.19660 6.24917 6.27389 6.33569 6.40386 6.45711 6.53286 6.59592 6.92388 7.12970 7.51862 7.54122 8.20879 8.24739 8.98696 9.51268 10.37946 11.21646 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023756 B = 0.002025 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.348586 B =13824.556633 C =14138.219806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.091 0.909 4 N -0.713 5.713 5 C 0.558 3.442 6 O -0.536 6.536 7 C -0.134 4.134 8 C -0.068 4.068 9 C -0.130 4.130 10 C -0.052 4.052 11 C -0.029 4.029 12 C 0.271 3.729 13 N -0.536 5.536 14 C 0.265 3.735 15 N -0.483 5.483 16 H 0.444 0.556 17 N -0.299 5.299 18 C -0.025 4.025 19 C -0.142 4.142 20 C 0.129 3.871 21 N -0.629 5.629 22 C -0.304 4.304 23 H 0.082 0.918 24 C -0.026 4.026 25 N -0.934 5.934 26 Si 1.069 2.931 27 H -0.295 1.295 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.109 3.891 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.226 0.774 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -2.620 33.705 34.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.109 0.891 4 N -0.364 5.364 5 C 0.345 3.655 6 O -0.414 6.414 7 C -0.137 4.137 8 C -0.088 4.088 9 C -0.148 4.148 10 C -0.073 4.073 11 C -0.031 4.031 12 C -0.009 4.009 13 N -0.263 5.263 14 C -0.034 4.034 15 N -0.201 5.201 16 H 0.290 0.710 17 N -0.128 5.128 18 C -0.046 4.046 19 C -0.162 4.162 20 C 0.003 3.997 21 N -0.356 5.356 22 C -0.430 4.430 23 H 0.100 0.900 24 C -0.225 4.225 25 N -0.576 5.576 26 Si 0.902 3.098 27 H -0.222 1.222 28 H -0.220 1.220 29 H -0.213 1.213 30 C -0.017 4.017 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.242 0.758 39 H 0.162 0.838 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.813 -0.983 31.921 32.461 hybrid contribution 1.379 -0.560 1.756 2.302 sum -4.433 -1.543 33.677 34.003 Atomic orbital electron populations 1.22140 0.95181 1.02018 1.02520 1.21042 0.93962 0.97511 0.82746 0.89084 1.45984 1.66840 1.14091 1.09508 1.18159 0.77785 0.86518 0.83019 1.90782 1.50232 1.15435 1.84932 1.19894 1.05073 0.94416 0.94339 1.21518 0.95029 0.93205 0.99040 1.21070 1.00868 1.00682 0.92158 1.21393 0.94890 0.92500 0.98498 1.17321 1.04463 0.93095 0.88266 1.22260 0.96903 0.88422 0.93293 1.70501 1.24167 1.32542 0.99133 1.26117 0.95026 0.81867 1.00418 1.48145 1.50997 1.12986 1.08000 0.70987 1.78329 1.25005 1.16237 0.93224 1.21288 0.92805 1.00721 0.89801 1.23597 0.98530 1.00393 0.93670 1.22306 0.92503 0.98518 0.86388 1.45968 1.19333 1.69237 1.01108 1.20151 1.08475 1.30795 0.83556 0.89995 1.25741 1.05700 0.99837 0.91185 1.70921 1.12011 1.46350 1.28346 0.83729 0.75086 0.76215 0.74785 1.22215 1.22027 1.21294 1.22736 0.90424 0.95750 0.92820 0.92488 0.92364 0.91219 0.76586 0.84972 0.84545 0.84244 0.75799 0.83782 0.88251 0.93881 0.94519 0.92981 0.93559 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 2 C 0.15 2.15 2.35 -67.93 -0.16 2.00 16 3 H 0.09 1.49 7.41 -51.93 -0.38 1.10 16 4 N -0.71 -8.71 4.89 -54.74 -0.27 -8.98 16 5 C 0.56 7.70 7.74 -12.32 -0.10 7.61 16 6 O -0.54 -9.33 16.00 5.32 0.09 -9.24 16 7 C -0.13 -1.54 5.87 -105.01 -0.62 -2.16 16 8 C -0.07 -0.59 9.54 -39.13 -0.37 -0.96 16 9 C -0.13 -0.98 10.02 -39.69 -0.40 -1.38 16 10 C -0.05 -0.46 9.68 -39.17 -0.38 -0.84 16 11 C -0.03 -0.31 5.87 -104.95 -0.62 -0.93 16 12 C 0.27 2.99 7.77 -156.62 -1.22 1.77 16 13 N -0.54 -4.96 10.81 -12.38 -0.13 -5.09 16 14 C 0.26 1.37 13.11 -90.70 -1.19 0.18 16 15 N -0.48 -2.88 7.44 29.52 0.22 -2.66 16 16 H 0.44 0.93 8.96 -182.34 -1.63 -0.70 16 17 N -0.30 -3.23 12.42 32.10 0.40 -2.84 16 18 C -0.03 -0.30 9.22 -38.84 -0.36 -0.66 16 19 C -0.14 -2.32 3.52 -89.96 -0.32 -2.63 16 20 C 0.13 2.50 8.12 -8.49 -0.07 2.44 16 21 N -0.63 -15.53 3.69 -184.56 -0.68 -16.21 16 22 C -0.30 -8.85 11.08 -15.06 -0.17 -9.02 16 23 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 24 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 25 N -0.93 -29.80 13.70 55.49 0.76 -29.04 16 26 Si 1.07 27.03 25.16 -169.99 -4.28 22.75 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 28 H -0.29 -6.90 6.51 56.52 0.37 -6.53 16 29 H -0.29 -6.78 6.21 56.52 0.35 -6.43 16 30 C 0.11 2.27 5.27 -8.36 -0.04 2.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 3.82 6.63 -40.82 -0.27 3.55 16 35 H 0.13 0.84 6.39 -52.49 -0.34 0.50 16 36 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.14 1.06 7.82 -52.49 -0.41 0.65 16 38 H 0.23 -0.08 8.06 -52.48 -0.42 -0.50 16 39 H 0.14 1.92 7.42 -52.48 -0.39 1.53 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 44 H 0.05 0.97 7.50 -51.93 -0.39 0.58 16 45 H 0.05 1.17 4.72 -51.93 -0.25 0.92 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -39.05 376.66 -11.06 -50.11 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.10 Total: 0.43 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -5.74 Total: -4.90 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.30 Total: -64.82 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 27.03 SS G_CDS: -4.28 Total: 22.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.05 -11.06 -50.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970261175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.419 kcal (2) G-P(sol) polarization free energy of solvation -39.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds