Wall clock time and date at job start Wed Apr 1 2020 00:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21553 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.47858 * 120.00028 * 179.97438 * 5 4 2 8 8 C 1.39609 * 120.11232 * 359.73110 * 7 5 4 9 9 C 1.37981 * 119.98896 * 179.71761 * 8 7 5 10 10 C 1.38270 * 120.21305 * 0.55392 * 9 8 7 11 11 C 1.38917 * 120.22754 * 359.72275 * 10 9 8 12 12 N 1.40223 * 119.99460 * 180.02562 * 11 10 9 13 13 C 1.34713 * 126.84230 * 359.97406 * 12 11 10 14 14 N 1.30856 * 108.03566 * 180.02562 * 13 12 11 15 15 C 1.33260 * 109.84001 * 0.02562 * 14 13 12 16 16 N 1.30758 * 108.99737 * 359.71194 * 15 14 13 17 17 C 1.38595 * 120.00888 * 359.97438 * 11 10 9 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36933 * 136.05439 * 207.08381 * 20 19 18 22 22 H 1.07997 * 120.00623 * 7.51587 * 21 20 19 23 23 C 1.38811 * 119.99801 * 187.50516 * 21 20 19 24 24 N 1.31620 * 120.00313 * 174.40470 * 23 21 20 25 25 Si 1.86807 * 120.00107 * 354.40682 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95313 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95489 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95521 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34485 * 20 19 18 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 32 32 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.08000 * 120.01103 * 359.97129 * 8 7 5 35 35 H 1.07997 * 119.89502 * 180.27448 * 9 8 7 36 36 H 1.07999 * 119.88618 * 179.69738 * 10 9 8 37 37 H 1.08006 * 125.98505 * 359.97438 * 13 12 11 38 38 H 1.07993 * 125.49944 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.10861 * 179.97438 * 17 11 10 40 40 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.01014 * 24 23 21 44 44 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 45 45 H 1.09002 * 113.46631 * 217.88470 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1611 2.4118 7 6 2.6395 -0.7154 3.5645 8 6 2.9663 -2.0714 3.5060 9 6 3.4310 -2.7180 4.6329 10 6 3.5638 -2.0301 5.8249 11 6 3.2358 -0.6820 5.8946 12 7 3.3729 0.0111 7.1059 13 6 3.8062 -0.4902 8.2788 14 7 3.7881 0.4742 9.1630 15 6 3.3517 1.5988 8.5967 16 7 3.0902 1.3673 7.3366 17 6 2.7740 -0.0217 4.7669 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8456 32 1 -0.3633 0.4403 -0.9286 33 1 2.2491 -1.6318 1.1526 34 1 2.8592 -2.6133 2.5780 35 1 3.6876 -3.7660 4.5848 36 1 3.9235 -2.5426 6.7048 37 1 4.1138 -1.5099 8.4582 38 1 3.2377 2.5493 9.0965 39 1 2.5182 1.0262 4.8194 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970401587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:47 Heat of formation + Delta-G solvation = 155.229874 kcal Electronic energy + Delta-G solvation = -28249.178474 eV Core-core repulsion = 24271.290153 eV Total energy + Delta-G solvation = -3977.888321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78992 -40.61934 -39.31432 -38.34615 -35.20038 -34.70619 -32.52380 -32.20997 -31.55661 -30.87161 -29.64726 -27.85845 -25.48621 -25.01540 -24.52341 -23.66134 -22.50180 -21.76392 -21.02768 -20.54705 -19.72124 -18.88348 -17.54444 -17.13516 -16.85313 -16.42277 -16.32975 -15.78219 -15.49073 -15.16662 -14.97052 -14.65986 -14.46868 -14.23275 -13.99145 -13.76289 -13.44215 -13.27129 -13.00855 -12.88647 -12.41514 -12.34367 -12.03633 -11.90770 -11.83123 -11.37757 -11.30101 -11.11858 -10.77049 -10.60342 -10.38388 -10.37457 -10.21555 -10.11454 -9.63544 -9.25877 -9.18994 -9.05931 -8.95779 -8.93142 -7.19869 -6.32243 -3.26570 0.04826 0.46598 1.41916 1.64609 2.41033 2.57248 2.92248 3.38272 3.39451 3.43037 3.63231 3.72224 3.88093 4.15591 4.27465 4.37711 4.49392 4.56346 4.57579 4.64839 4.81235 4.91394 4.93251 5.03677 5.26479 5.34136 5.43047 5.48905 5.49848 5.64542 5.70463 5.71319 5.80701 5.82607 5.88239 5.97625 6.02359 6.11426 6.18944 6.21251 6.26657 6.32891 6.44493 6.48126 6.85988 7.07854 7.37443 7.49049 8.05503 8.20529 8.94410 9.46933 10.33108 11.17552 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.002054 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.439530 B =13629.089670 C =13951.216202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.092 0.908 4 N -0.711 5.711 5 C 0.556 3.444 6 O -0.531 6.531 7 C -0.105 4.105 8 C -0.087 4.087 9 C -0.098 4.098 10 C -0.112 4.112 11 C 0.138 3.862 12 N -0.329 5.329 13 C 0.260 3.740 14 N -0.537 5.537 15 C 0.206 3.794 16 N -0.308 5.308 17 C -0.054 4.054 18 C -0.142 4.142 19 C 0.129 3.871 20 N -0.628 5.628 21 C -0.305 4.305 22 H 0.082 0.918 23 C -0.026 4.026 24 N -0.933 5.933 25 Si 1.069 2.931 26 H -0.294 1.294 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.109 3.891 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.223 0.777 38 H 0.224 0.776 39 H 0.153 0.847 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 -6.014 29.600 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.110 0.890 4 N -0.362 5.362 5 C 0.342 3.658 6 O -0.408 6.408 7 C -0.109 4.109 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.133 4.133 11 C 0.046 3.954 12 N -0.114 5.114 13 C -0.035 4.035 14 N -0.263 5.263 15 C -0.096 4.096 16 N -0.133 5.133 17 C -0.075 4.075 18 C -0.162 4.162 19 C 0.003 3.997 20 N -0.356 5.356 21 C -0.431 4.431 22 H 0.100 0.900 23 C -0.224 4.224 24 N -0.575 5.575 25 Si 0.902 3.098 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.213 1.213 29 C -0.017 4.017 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.240 0.760 38 H 0.241 0.759 39 H 0.170 0.830 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.014 -3.952 28.167 29.072 hybrid contribution 1.416 -1.372 1.087 2.251 sum -4.598 -5.323 29.254 30.088 Atomic orbital electron populations 1.22142 0.95063 1.02055 1.02626 1.21075 0.94038 0.97540 0.82630 0.88999 1.45985 1.66620 1.14099 1.09475 1.18085 0.78107 0.86571 0.82999 1.90807 1.49851 1.15316 1.84814 1.19929 1.02711 0.94197 0.94067 1.21511 0.96477 0.93273 0.99395 1.20956 0.98758 1.00614 0.91284 1.20994 1.01126 0.91290 0.99874 1.17417 1.03412 0.91056 0.83529 1.47749 1.47496 1.07689 1.08424 1.26214 0.95415 1.00898 0.81020 1.70646 1.23799 0.99510 1.32334 1.26236 0.95946 0.98773 0.88666 1.78262 1.24874 0.91379 1.18791 1.21021 0.95482 1.01600 0.89359 1.23608 0.98548 1.00428 0.93640 1.22305 0.92444 0.98493 0.86484 1.45966 1.19316 1.69232 1.01080 1.20145 1.08524 1.30904 0.83532 0.89988 1.25748 1.05700 0.99797 0.91182 1.70922 1.12007 1.46232 1.28347 0.83730 0.75051 0.76203 0.74852 1.22165 1.22022 1.21288 1.22738 0.90466 0.95748 0.92776 0.92453 0.92351 0.91102 0.76540 0.84447 0.83814 0.84544 0.76039 0.75944 0.82962 0.88211 0.93897 0.94556 0.92952 0.93536 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 2 C 0.15 2.03 2.35 -67.93 -0.16 1.87 16 3 H 0.09 1.43 7.41 -51.93 -0.38 1.05 16 4 N -0.71 -7.93 4.89 -54.74 -0.27 -8.20 16 5 C 0.56 7.05 7.74 -12.32 -0.10 6.96 16 6 O -0.53 -8.79 16.01 5.32 0.09 -8.71 16 7 C -0.11 -1.05 5.87 -104.99 -0.62 -1.67 16 8 C -0.09 -0.58 9.54 -39.16 -0.37 -0.95 16 9 C -0.10 -0.47 10.03 -39.66 -0.40 -0.87 16 10 C -0.11 -0.60 9.47 -39.32 -0.37 -0.97 16 11 C 0.14 1.20 6.69 -83.63 -0.56 0.64 16 12 N -0.33 -3.05 3.82 -11.84 -0.05 -3.10 16 13 C 0.26 1.84 11.98 -90.38 -1.08 0.76 16 14 N -0.54 -4.84 11.19 -15.75 -0.18 -5.02 16 15 C 0.21 1.81 13.03 -91.76 -1.20 0.62 16 16 N -0.31 -3.38 12.05 29.30 0.35 -3.02 16 17 C -0.05 -0.58 9.23 -38.99 -0.36 -0.94 16 18 C -0.14 -2.22 3.52 -89.96 -0.32 -2.54 16 19 C 0.13 2.41 8.12 -8.49 -0.07 2.35 16 20 N -0.63 -15.18 3.69 -184.56 -0.68 -15.86 16 21 C -0.30 -8.75 11.08 -15.06 -0.17 -8.92 16 22 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 23 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 24 N -0.93 -29.45 13.70 55.49 0.76 -28.69 16 25 Si 1.07 26.63 25.16 -169.99 -4.28 22.35 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -6.78 6.51 56.52 0.37 -6.41 16 28 H -0.29 -6.67 6.21 56.52 0.35 -6.32 16 29 C 0.11 2.21 5.27 -8.36 -0.04 2.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.34 6.63 -40.82 -0.27 3.07 16 34 H 0.14 0.62 6.40 -52.49 -0.34 0.29 16 35 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 36 H 0.14 0.27 6.79 -52.49 -0.36 -0.09 16 37 H 0.22 0.47 7.09 -52.48 -0.37 0.10 16 38 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.15 1.96 7.33 -52.49 -0.38 1.57 16 40 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 44 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 45 H 0.06 1.15 4.72 -51.93 -0.25 0.91 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -38.03 374.81 -9.93 -47.96 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.78 Total: 0.54 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -5.55 Total: -3.92 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.06 Total: -63.89 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.28 Total: 22.35 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.03 -9.93 -47.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970401587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.193 kcal (2) G-P(sol) polarization free energy of solvation -38.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds