Wall clock time and date at job start Wed Apr 1 2020 00:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34774 * 120.00022 * 274.99616 * 4 2 1 6 6 O 1.21553 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.47858 * 120.00028 * 179.97438 * 5 4 2 8 8 C 1.39609 * 120.11232 * 359.73110 * 7 5 4 9 9 C 1.37981 * 119.98896 * 179.71761 * 8 7 5 10 10 C 1.38270 * 120.21305 * 0.55392 * 9 8 7 11 11 C 1.38917 * 120.22754 * 359.72275 * 10 9 8 12 12 N 1.40223 * 119.99460 * 180.02562 * 11 10 9 13 13 C 1.34713 * 126.84230 * 359.97406 * 12 11 10 14 14 N 1.30856 * 108.03566 * 180.02562 * 13 12 11 15 15 C 1.33260 * 109.84001 * 0.02562 * 14 13 12 16 16 N 1.30758 * 108.99737 * 359.71194 * 15 14 13 17 17 C 1.38595 * 120.00888 * 359.97438 * 11 10 9 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36933 * 136.05439 * 207.08381 * 20 19 18 22 22 H 1.07997 * 120.00623 * 7.51587 * 21 20 19 23 23 C 1.38811 * 119.99801 * 187.50516 * 21 20 19 24 24 N 1.31620 * 120.00313 * 174.40470 * 23 21 20 25 25 Si 1.86807 * 120.00107 * 354.40682 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95313 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95489 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95521 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34485 * 20 19 18 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.09006 * 109.46666 * 304.63623 * 1 2 3 32 32 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.08000 * 120.01103 * 359.97129 * 8 7 5 35 35 H 1.07997 * 119.89502 * 180.27448 * 9 8 7 36 36 H 1.07999 * 119.88618 * 179.69738 * 10 9 8 37 37 H 1.08006 * 125.98505 * 359.97438 * 13 12 11 38 38 H 1.07993 * 125.49944 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.10861 * 179.97438 * 17 11 10 40 40 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.01014 * 24 23 21 44 44 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 45 45 H 1.09002 * 113.46631 * 217.88470 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8577 1.1611 2.4118 7 6 2.6395 -0.7154 3.5645 8 6 2.9663 -2.0714 3.5060 9 6 3.4310 -2.7180 4.6329 10 6 3.5638 -2.0301 5.8249 11 6 3.2358 -0.6820 5.8946 12 7 3.3729 0.0111 7.1059 13 6 3.8062 -0.4902 8.2788 14 7 3.7881 0.4742 9.1630 15 6 3.3517 1.5988 8.5967 16 7 3.0902 1.3673 7.3366 17 6 2.7740 -0.0217 4.7669 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8456 32 1 -0.3633 0.4403 -0.9286 33 1 2.2491 -1.6318 1.1526 34 1 2.8592 -2.6133 2.5780 35 1 3.6876 -3.7660 4.5848 36 1 3.9235 -2.5426 6.7048 37 1 4.1138 -1.5099 8.4582 38 1 3.2377 2.5493 9.0965 39 1 2.5182 1.0262 4.8194 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970401587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:46 Heat of formation + Delta-G solvation = 129.558009 kcal Electronic energy + Delta-G solvation = -28250.291690 eV Core-core repulsion = 24271.290153 eV Total energy + Delta-G solvation = -3979.001536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38015 -41.53198 -40.44859 -39.41203 -36.40563 -35.34929 -34.51274 -32.94752 -32.33462 -31.72596 -30.36019 -29.56330 -26.99426 -25.94864 -25.30449 -24.81450 -23.26828 -22.56138 -22.11966 -21.48064 -21.10857 -19.73202 -19.55486 -17.87380 -17.70727 -17.22780 -17.08068 -16.95160 -16.42569 -16.17165 -15.92819 -15.72035 -15.54728 -15.16996 -15.14319 -14.88704 -14.75975 -14.51839 -13.99368 -13.68947 -13.43474 -13.36236 -13.13579 -13.07894 -12.87132 -12.61910 -12.51845 -12.36869 -12.04546 -11.94025 -11.70028 -11.33638 -11.23593 -11.16395 -11.06296 -11.03552 -10.81533 -10.30541 -10.05137 -9.52950 -9.24389 -8.62589 -5.49210 -0.48546 -0.15961 0.87794 1.11103 1.37995 1.48678 1.66808 1.75242 1.86036 1.99550 2.53745 2.72898 2.96086 3.17828 3.26293 3.33395 3.47914 3.64830 3.75160 3.80773 3.91540 4.00927 4.06770 4.17257 4.26773 4.31878 4.43601 4.48052 4.56638 4.64495 4.73150 4.77005 4.77611 4.83610 4.90849 5.02583 5.12515 5.18052 5.21145 5.26884 5.28153 5.29985 5.40203 5.47124 5.54897 5.93791 5.94130 6.49243 6.68345 6.89950 7.14711 7.31181 8.25886 8.88796 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.002054 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.439530 B =13629.089670 C =13951.216202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.066 0.934 4 N -0.698 5.698 5 C 0.555 3.445 6 O -0.582 6.582 7 C -0.125 4.125 8 C -0.080 4.080 9 C -0.084 4.084 10 C -0.093 4.093 11 C 0.122 3.878 12 N -0.340 5.340 13 C 0.270 3.730 14 N -0.563 5.563 15 C 0.205 3.795 16 N -0.359 5.359 17 C -0.081 4.081 18 C -0.102 4.102 19 C 0.127 3.873 20 N -0.661 5.661 21 C -0.291 4.291 22 H 0.052 0.948 23 C -0.087 4.087 24 N -0.970 5.970 25 Si 1.106 2.894 26 H -0.306 1.306 27 H -0.262 1.262 28 H -0.266 1.266 29 C 0.096 3.904 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.180 0.820 37 H 0.273 0.727 38 H 0.247 0.753 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.246 0.754 44 H 0.046 0.954 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -9.263 32.349 34.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.084 0.916 4 N -0.350 5.350 5 C 0.343 3.657 6 O -0.463 6.463 7 C -0.129 4.129 8 C -0.099 4.099 9 C -0.103 4.103 10 C -0.113 4.113 11 C 0.030 3.970 12 N -0.124 5.124 13 C -0.024 4.024 14 N -0.289 5.289 15 C -0.097 4.097 16 N -0.185 5.185 17 C -0.102 4.102 18 C -0.122 4.122 19 C 0.001 3.999 20 N -0.390 5.390 21 C -0.418 4.418 22 H 0.070 0.930 23 C -0.279 4.279 24 N -0.616 5.616 25 Si 0.932 3.068 26 H -0.234 1.234 27 H -0.188 1.188 28 H -0.192 1.192 29 C -0.029 4.029 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.255 0.745 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.198 0.802 37 H 0.288 0.712 38 H 0.263 0.737 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.005 -7.253 30.977 32.577 hybrid contribution 1.847 -0.440 0.386 1.937 sum -5.158 -7.693 31.362 32.701 Atomic orbital electron populations 1.22098 0.93439 1.03426 1.02417 1.20804 0.95171 0.96095 0.82504 0.91588 1.45764 1.66120 1.14727 1.08355 1.18556 0.77150 0.86055 0.83963 1.90780 1.52161 1.17673 1.85649 1.19702 1.05063 0.95727 0.92392 1.21837 0.95173 0.91525 1.01366 1.21490 0.96529 1.02278 0.89954 1.21541 0.98586 0.89449 1.01770 1.17679 1.04190 0.92406 0.82700 1.47824 1.48077 1.07253 1.09272 1.27198 0.93241 1.02258 0.79671 1.70674 1.24946 1.00036 1.33230 1.26783 0.94850 0.99832 0.88237 1.78218 1.26871 0.93286 1.20094 1.20811 0.97868 1.00338 0.91178 1.23287 0.96034 1.00513 0.92339 1.22496 0.95081 0.99028 0.83258 1.46114 1.20980 1.69886 1.01979 1.20027 1.07294 1.28882 0.85618 0.93040 1.27084 1.08644 1.01052 0.91130 1.71025 1.11996 1.48840 1.29712 0.83316 0.72390 0.76437 0.74700 1.23418 1.18755 1.19168 1.22952 0.88612 0.96389 0.94956 0.90124 0.93236 0.90856 0.74530 0.81972 0.79516 0.80238 0.71200 0.73672 0.86872 0.85708 0.92258 0.94812 0.94510 0.93610 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.48 71.98 0.68 -2.65 16 2 C 0.16 3.97 2.35 44.99 0.11 4.07 16 3 H 0.07 2.04 7.41 -2.39 -0.02 2.02 16 4 N -0.70 -14.13 4.89 -445.39 -2.18 -16.31 16 5 C 0.55 14.00 7.74 86.79 0.67 14.67 16 6 O -0.58 -20.35 16.01 -3.88 -0.06 -20.41 16 7 C -0.13 -2.39 5.87 -20.10 -0.12 -2.51 16 8 C -0.08 -0.76 9.54 22.54 0.21 -0.55 16 9 C -0.08 -0.36 10.03 22.22 0.22 -0.14 16 10 C -0.09 -0.56 9.47 22.44 0.21 -0.35 16 11 C 0.12 1.95 6.69 38.05 0.25 2.20 16 12 N -0.34 -6.02 3.82 -191.36 -0.73 -6.75 16 13 C 0.27 3.16 11.98 180.26 2.16 5.32 16 14 N -0.56 -9.46 11.19 -203.73 -2.28 -11.74 16 15 C 0.20 3.64 13.03 180.75 2.35 5.99 16 16 N -0.36 -8.24 12.05 -61.21 -0.74 -8.98 16 17 C -0.08 -1.80 9.23 22.65 0.21 -1.59 16 18 C -0.10 -2.89 3.52 -10.37 -0.04 -2.92 16 19 C 0.13 4.49 8.12 83.18 0.68 5.17 16 20 N -0.66 -31.29 3.69 -737.83 -2.72 -34.01 16 21 C -0.29 -16.89 11.08 84.03 0.93 -15.96 16 22 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 23 C -0.09 -5.26 5.50 84.86 0.47 -4.80 16 24 N -0.97 -63.17 13.70 21.65 0.30 -62.88 16 25 Si 1.11 53.40 25.16 68.60 1.73 55.13 16 26 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 27 H -0.26 -11.22 6.51 99.48 0.65 -10.57 16 28 H -0.27 -11.82 6.21 99.48 0.62 -11.21 16 29 C 0.10 3.71 5.27 83.27 0.44 4.15 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 5.43 6.63 -92.71 -0.61 4.81 16 34 H 0.16 0.65 6.40 -2.91 -0.02 0.63 16 35 H 0.19 -0.68 8.06 -2.91 -0.02 -0.71 16 36 H 0.18 -0.51 6.79 -2.91 -0.02 -0.53 16 37 H 0.27 -0.21 7.09 -2.91 -0.02 -0.23 16 38 H 0.25 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.11 3.34 7.33 -2.91 -0.02 3.31 16 40 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.03 1.24 8.11 -2.39 -0.02 1.23 16 43 H 0.25 16.05 8.73 -92.70 -0.81 15.25 16 44 H 0.05 1.80 7.50 -2.39 -0.02 1.78 16 45 H 0.06 2.18 4.72 -2.39 -0.01 2.17 16 Total: -1.00 -90.81 374.81 2.99 -87.82 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.23 Total: 8.02 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 9.45 Total: 10.11 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -8.35 Total: -140.67 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 1.73 Total: 55.13 kcal Total: -90.81 2.99 -87.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970401587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.377 kcal (2) G-P(sol) polarization free energy of solvation -90.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds