Wall clock time and date at job start Wed Apr 1 2020 00:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46975 * 2 1 4 4 N 1.46497 * 109.47288 * 240.00165 * 2 1 3 5 5 C 1.34770 * 120.00340 * 85.00014 * 4 2 1 6 6 O 1.21559 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.47858 * 120.00560 * 180.02562 * 5 4 2 8 8 C 1.39620 * 120.11085 * 0.02562 * 7 5 4 9 9 C 1.37976 * 119.99023 * 179.97438 * 8 7 5 10 10 C 1.38267 * 120.21294 * 359.97438 * 9 8 7 11 11 C 1.38918 * 120.22685 * 359.76464 * 10 9 8 12 12 N 1.40230 * 119.99127 * 180.26196 * 11 10 9 13 13 C 1.34721 * 126.84463 * 0.24746 * 12 11 10 14 14 N 1.30849 * 108.03080 * 180.02562 * 13 12 11 15 15 C 1.33259 * 109.84684 * 0.02562 * 14 13 12 16 16 N 1.30752 * 108.99610 * 359.71141 * 15 14 13 17 17 C 1.38590 * 120.01046 * 0.51257 * 11 10 9 18 18 C 1.53001 * 109.46885 * 120.00051 * 2 1 3 19 19 C 1.53938 * 113.74387 * 282.19549 * 18 2 1 20 20 N 1.47809 * 86.04123 * 222.08548 * 19 18 2 21 21 C 1.36936 * 134.45881 * 204.64636 * 20 19 18 22 22 H 1.08001 * 120.00054 * 182.58574 * 21 20 19 23 23 C 1.38814 * 120.00129 * 2.58435 * 21 20 19 24 24 N 1.31619 * 119.99852 * 353.41387 * 23 21 20 25 25 Si 1.86792 * 120.00078 * 173.41756 * 23 21 20 26 26 H 1.48502 * 109.47174 * 94.97137 * 25 23 21 27 27 H 1.48502 * 109.47055 * 214.96953 * 25 23 21 28 28 H 1.48502 * 109.47294 * 334.96726 * 25 23 21 29 29 C 1.47583 * 91.04854 * 24.54965 * 20 19 18 30 30 H 1.09004 * 109.47285 * 184.48358 * 1 2 3 31 31 H 1.08994 * 109.47319 * 304.48558 * 1 2 3 32 32 H 1.09002 * 109.47342 * 64.49027 * 1 2 3 33 33 H 0.97007 * 119.99888 * 265.00470 * 4 2 1 34 34 H 1.08003 * 120.00447 * 359.97438 * 8 7 5 35 35 H 1.07995 * 119.89635 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.88368 * 179.97438 * 10 9 8 37 37 H 1.08002 * 125.98071 * 0.02562 * 13 12 11 38 38 H 1.08001 * 125.50054 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.10837 * 179.74632 * 17 11 10 40 40 H 1.09001 * 112.94252 * 53.79601 * 18 2 1 41 41 H 1.09004 * 113.77145 * 336.35821 * 19 18 2 42 42 H 1.09008 * 113.76690 * 107.74501 * 19 18 2 43 43 H 0.97001 * 120.00538 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.76942 * 221.15392 * 29 20 19 45 45 H 1.08999 * 113.86957 * 89.76260 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1613 -2.4116 7 6 2.6395 -0.7153 -3.5645 8 6 2.9712 -2.0702 -3.5048 9 6 3.4299 -2.7184 -4.6331 10 6 3.5622 -2.0305 -5.8253 11 6 3.2296 -0.6836 -5.8961 12 7 3.3604 0.0079 -7.1091 13 6 3.7876 -0.4950 -8.2836 14 7 3.7660 0.4686 -9.1686 15 6 3.3344 1.5944 -8.6011 16 7 3.0679 1.3616 -7.3424 17 6 2.7734 -0.0219 -4.7671 18 6 2.0399 -0.7213 1.2493 19 6 1.9659 0.1297 2.5299 20 7 3.3032 -0.4146 2.8463 21 6 4.0102 -0.6100 4.0026 22 1 5.0166 -0.9997 3.9609 23 6 3.4334 -0.3071 5.2284 24 7 2.2601 0.2875 5.2746 25 14 4.3225 -0.7432 6.8122 26 1 5.0966 0.4325 7.2852 27 1 3.3299 -1.1309 7.8464 28 1 5.2478 -1.8779 6.5642 29 6 3.5693 -0.6652 1.4164 30 1 -0.3634 -1.0245 0.0803 31 1 -0.3633 0.5818 0.8470 32 1 -0.3634 0.4426 -0.9275 33 1 2.2490 -1.6318 -1.1526 34 1 2.8688 -2.6109 -2.5754 35 1 3.6865 -3.7663 -4.5851 36 1 3.9222 -2.5430 -6.7052 37 1 4.0941 -1.5149 -8.4633 38 1 3.2183 2.5445 -9.1015 39 1 2.5182 1.0262 -4.8194 40 1 1.6225 -1.7218 1.3623 41 1 1.9613 1.2037 2.3441 42 1 1.1862 -0.1866 3.2231 43 1 1.8571 0.4995 6.1311 44 1 4.0676 -1.6150 1.2221 45 1 4.0370 0.1737 0.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970401588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:49 Heat of formation + Delta-G solvation = 146.977318 kcal Electronic energy + Delta-G solvation = -28130.190619 eV Core-core repulsion = 24151.944440 eV Total energy + Delta-G solvation = -3978.246179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.74755 -40.50272 -39.06147 -37.93710 -34.98645 -34.61666 -32.35770 -32.07112 -31.46260 -30.69568 -29.54057 -27.50607 -25.24294 -24.71470 -24.39090 -23.78455 -22.51164 -21.75513 -21.15201 -20.42088 -19.55470 -18.59058 -17.08978 -16.82039 -16.73803 -16.28942 -16.19150 -15.68942 -15.19221 -14.96224 -14.75479 -14.59184 -14.32129 -14.16882 -13.95908 -13.60410 -13.43933 -13.10373 -12.83452 -12.35065 -12.32925 -12.10747 -11.84741 -11.61837 -11.41131 -11.32115 -11.26394 -10.93108 -10.69074 -10.56264 -10.40011 -10.33489 -10.18674 -9.85105 -9.75172 -9.56631 -9.47262 -8.97058 -8.88446 -8.75691 -6.90647 -5.79338 -3.10356 0.10669 0.52878 1.46957 1.69188 2.45174 2.65535 3.06313 3.37585 3.42589 3.44829 3.47661 3.76025 3.93933 4.21948 4.32714 4.42967 4.43765 4.57368 4.63841 4.87608 4.97636 5.09040 5.14307 5.31759 5.37545 5.51011 5.53378 5.60822 5.71122 5.77432 5.78758 5.86408 5.92871 5.95538 6.01940 6.07083 6.23829 6.32232 6.41121 6.49490 6.52883 6.59629 6.75236 7.19511 7.34175 7.50528 7.53076 7.53692 7.96040 8.18000 9.02614 9.69161 10.58114 11.38330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.001933 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.597527 B =14482.113798 C =14790.522573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.090 0.910 4 N -0.710 5.710 5 C 0.554 3.446 6 O -0.532 6.532 7 C -0.104 4.104 8 C -0.087 4.087 9 C -0.098 4.098 10 C -0.113 4.113 11 C 0.138 3.862 12 N -0.329 5.329 13 C 0.259 3.741 14 N -0.538 5.538 15 C 0.205 3.795 16 N -0.307 5.307 17 C -0.054 4.054 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.223 0.777 38 H 0.224 0.776 39 H 0.153 0.847 40 H 0.089 0.911 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -7.741 -26.383 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.108 0.892 4 N -0.361 5.361 5 C 0.340 3.660 6 O -0.409 6.409 7 C -0.108 4.108 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.134 4.134 11 C 0.045 3.955 12 N -0.113 5.113 13 C -0.036 4.036 14 N -0.264 5.264 15 C -0.097 4.097 16 N -0.133 5.133 17 C -0.075 4.075 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.239 0.761 38 H 0.240 0.760 39 H 0.170 0.830 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.624 -6.343 -25.884 26.657 hybrid contribution 0.728 -0.735 0.899 1.370 sum 0.104 -7.078 -24.985 25.968 Atomic orbital electron populations 1.22112 0.95233 1.01999 1.02276 1.21179 0.93930 0.97565 0.82746 0.89236 1.46055 1.66379 1.14032 1.09585 1.18089 0.78251 0.86610 0.83035 1.90807 1.49977 1.15313 1.84823 1.19975 1.02459 0.94209 0.94151 1.21521 0.96452 0.93302 0.99382 1.20948 0.98861 1.00555 0.91286 1.20982 1.01221 0.91305 0.99870 1.17420 1.03525 0.91084 0.83453 1.47755 1.47399 1.07837 1.08313 1.26205 0.95561 1.00882 0.80939 1.70637 1.23943 0.99454 1.32318 1.26230 0.95975 0.98744 0.88734 1.78265 1.24573 0.91567 1.18853 1.21023 0.95517 1.01589 0.89360 1.23858 0.97645 1.00750 0.94466 1.22232 0.89652 0.93971 0.89142 1.46041 1.16070 1.72068 0.99628 1.19023 0.96902 1.36702 0.82537 0.90314 1.24785 0.97315 1.00863 0.97469 1.69820 1.17210 1.45474 1.24249 0.86118 0.78390 0.78031 0.83314 1.21688 1.21572 1.20587 1.22536 0.93024 0.97690 0.86858 0.92650 0.90983 0.92781 0.76708 0.84422 0.83856 0.84597 0.76058 0.75964 0.82978 0.89248 0.95345 0.90794 0.93613 0.94116 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.43 37.16 0.35 -1.79 16 2 C 0.15 2.23 2.29 -67.93 -0.16 2.07 16 3 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 4 N -0.71 -8.67 4.90 -54.75 -0.27 -8.94 16 5 C 0.55 7.53 7.74 -12.33 -0.10 7.44 16 6 O -0.53 -9.35 16.01 5.31 0.09 -9.26 16 7 C -0.10 -1.10 5.87 -104.99 -0.62 -1.72 16 8 C -0.09 -0.63 9.54 -39.16 -0.37 -1.00 16 9 C -0.10 -0.51 10.02 -39.67 -0.40 -0.91 16 10 C -0.11 -0.64 9.47 -39.32 -0.37 -1.02 16 11 C 0.14 1.25 6.69 -83.63 -0.56 0.69 16 12 N -0.33 -3.16 3.82 -11.84 -0.05 -3.21 16 13 C 0.26 1.91 11.98 -90.38 -1.08 0.83 16 14 N -0.54 -5.00 11.19 -15.75 -0.18 -5.17 16 15 C 0.21 1.87 13.03 -91.76 -1.20 0.67 16 16 N -0.31 -3.48 12.05 29.30 0.35 -3.13 16 17 C -0.05 -0.61 9.23 -39.00 -0.36 -0.97 16 18 C -0.15 -2.52 3.35 -89.70 -0.30 -2.82 16 19 C 0.18 4.00 7.02 -2.84 -0.02 3.98 16 20 N -0.61 -15.47 3.70 -177.69 -0.66 -16.12 16 21 C -0.22 -6.26 10.69 -15.06 -0.16 -6.42 16 22 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.13 11.43 55.49 0.63 -26.50 16 25 Si 0.91 22.01 29.56 -169.99 -5.02 16.99 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.13 2.45 8.38 -2.96 -0.02 2.43 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.72 6.63 -40.82 -0.27 3.45 16 34 H 0.14 0.70 6.40 -52.48 -0.34 0.37 16 35 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 36 H 0.14 0.31 6.79 -52.48 -0.36 -0.04 16 37 H 0.22 0.53 7.09 -52.49 -0.37 0.16 16 38 H 0.22 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.15 2.05 7.33 -52.49 -0.38 1.66 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.07 1.85 7.20 -51.92 -0.37 1.47 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -36.74 382.24 -10.63 -47.36 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.83 Total: 1.10 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -5.46 Total: 1.13 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.16 Total: -63.08 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.74 -10.63 -47.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970401588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.339 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds