Wall clock time and date at job start Wed Apr 1 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46975 * 2 1 4 4 N 1.46497 * 109.47288 * 240.00165 * 2 1 3 5 5 C 1.34770 * 120.00340 * 85.00014 * 4 2 1 6 6 O 1.21559 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.47858 * 120.00560 * 180.02562 * 5 4 2 8 8 C 1.39620 * 120.11085 * 0.02562 * 7 5 4 9 9 C 1.37976 * 119.99023 * 179.97438 * 8 7 5 10 10 C 1.38267 * 120.21294 * 359.97438 * 9 8 7 11 11 C 1.38918 * 120.22685 * 359.76464 * 10 9 8 12 12 N 1.40230 * 119.99127 * 180.26196 * 11 10 9 13 13 C 1.34721 * 126.84463 * 0.24746 * 12 11 10 14 14 N 1.30849 * 108.03080 * 180.02562 * 13 12 11 15 15 C 1.33259 * 109.84684 * 0.02562 * 14 13 12 16 16 N 1.30752 * 108.99610 * 359.71141 * 15 14 13 17 17 C 1.38590 * 120.01046 * 0.51257 * 11 10 9 18 18 C 1.53001 * 109.46885 * 120.00051 * 2 1 3 19 19 C 1.53938 * 113.74387 * 282.19549 * 18 2 1 20 20 N 1.47809 * 86.04123 * 222.08548 * 19 18 2 21 21 C 1.36936 * 134.45881 * 204.64636 * 20 19 18 22 22 H 1.08001 * 120.00054 * 182.58574 * 21 20 19 23 23 C 1.38814 * 120.00129 * 2.58435 * 21 20 19 24 24 N 1.31619 * 119.99852 * 353.41387 * 23 21 20 25 25 Si 1.86792 * 120.00078 * 173.41756 * 23 21 20 26 26 H 1.48502 * 109.47174 * 94.97137 * 25 23 21 27 27 H 1.48502 * 109.47055 * 214.96953 * 25 23 21 28 28 H 1.48502 * 109.47294 * 334.96726 * 25 23 21 29 29 C 1.47583 * 91.04854 * 24.54965 * 20 19 18 30 30 H 1.09004 * 109.47285 * 184.48358 * 1 2 3 31 31 H 1.08994 * 109.47319 * 304.48558 * 1 2 3 32 32 H 1.09002 * 109.47342 * 64.49027 * 1 2 3 33 33 H 0.97007 * 119.99888 * 265.00470 * 4 2 1 34 34 H 1.08003 * 120.00447 * 359.97438 * 8 7 5 35 35 H 1.07995 * 119.89635 * 179.97438 * 9 8 7 36 36 H 1.08007 * 119.88368 * 179.97438 * 10 9 8 37 37 H 1.08002 * 125.98071 * 0.02562 * 13 12 11 38 38 H 1.08001 * 125.50054 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.10837 * 179.74632 * 17 11 10 40 40 H 1.09001 * 112.94252 * 53.79601 * 18 2 1 41 41 H 1.09004 * 113.77145 * 336.35821 * 19 18 2 42 42 H 1.09008 * 113.76690 * 107.74501 * 19 18 2 43 43 H 0.97001 * 120.00538 * 180.02562 * 24 23 21 44 44 H 1.09001 * 113.76942 * 221.15392 * 29 20 19 45 45 H 1.08999 * 113.86957 * 89.76260 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1613 -2.4116 7 6 2.6395 -0.7153 -3.5645 8 6 2.9712 -2.0702 -3.5048 9 6 3.4299 -2.7184 -4.6331 10 6 3.5622 -2.0305 -5.8253 11 6 3.2296 -0.6836 -5.8961 12 7 3.3604 0.0079 -7.1091 13 6 3.7876 -0.4950 -8.2836 14 7 3.7660 0.4686 -9.1686 15 6 3.3344 1.5944 -8.6011 16 7 3.0679 1.3616 -7.3424 17 6 2.7734 -0.0219 -4.7671 18 6 2.0399 -0.7213 1.2493 19 6 1.9659 0.1297 2.5299 20 7 3.3032 -0.4146 2.8463 21 6 4.0102 -0.6100 4.0026 22 1 5.0166 -0.9997 3.9609 23 6 3.4334 -0.3071 5.2284 24 7 2.2601 0.2875 5.2746 25 14 4.3225 -0.7432 6.8122 26 1 5.0966 0.4325 7.2852 27 1 3.3299 -1.1309 7.8464 28 1 5.2478 -1.8779 6.5642 29 6 3.5693 -0.6652 1.4164 30 1 -0.3634 -1.0245 0.0803 31 1 -0.3633 0.5818 0.8470 32 1 -0.3634 0.4426 -0.9275 33 1 2.2490 -1.6318 -1.1526 34 1 2.8688 -2.6109 -2.5754 35 1 3.6865 -3.7663 -4.5851 36 1 3.9222 -2.5430 -6.7052 37 1 4.0941 -1.5149 -8.4633 38 1 3.2183 2.5445 -9.1015 39 1 2.5182 1.0262 -4.8194 40 1 1.6225 -1.7218 1.3623 41 1 1.9613 1.2037 2.3441 42 1 1.1862 -0.1866 3.2231 43 1 1.8571 0.4995 6.1311 44 1 4.0676 -1.6150 1.2221 45 1 4.0370 0.1737 0.9012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970401588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:48 Heat of formation + Delta-G solvation = 124.035225 kcal Electronic energy + Delta-G solvation = -28131.185462 eV Core-core repulsion = 24151.944440 eV Total energy + Delta-G solvation = -3979.241022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.36564 -41.45706 -40.13872 -39.26203 -36.29120 -35.32124 -34.15289 -32.89982 -32.27464 -31.65891 -30.31179 -29.32329 -26.67428 -25.92643 -25.39069 -24.92218 -23.35121 -22.64247 -22.14148 -21.44884 -20.83871 -19.59693 -18.78364 -17.80674 -17.55963 -17.16080 -16.93778 -16.85568 -16.38363 -16.16715 -15.84586 -15.65606 -15.43775 -15.15116 -14.92113 -14.76961 -14.71380 -14.11504 -13.95666 -13.44190 -13.39703 -13.23520 -13.09249 -12.99551 -12.84990 -12.68155 -12.51156 -12.36669 -12.06047 -11.92474 -11.80608 -11.60848 -11.26154 -11.21384 -11.02339 -11.00581 -10.82304 -10.27665 -10.02156 -9.51075 -8.93672 -7.91685 -5.24129 -0.46516 -0.14076 0.89664 1.12701 1.45701 1.47139 1.56698 1.77132 1.87637 2.03438 2.47257 2.74923 3.29196 3.29781 3.35143 3.37489 3.57821 3.73015 3.78842 3.91106 3.95532 4.03547 4.09346 4.24498 4.32642 4.43509 4.47507 4.57138 4.76924 4.79324 4.80508 4.85769 4.92284 4.95857 5.07305 5.15260 5.23109 5.24529 5.28222 5.29239 5.31540 5.46048 5.54180 5.56916 5.64475 5.93060 5.96048 6.52671 6.91321 6.91349 7.17762 7.60518 8.56171 9.25891 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.001933 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.597527 B =14482.113798 C =14790.522573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.058 0.942 4 N -0.696 5.696 5 C 0.553 3.447 6 O -0.585 6.585 7 C -0.125 4.125 8 C -0.079 4.079 9 C -0.083 4.083 10 C -0.092 4.092 11 C 0.122 3.878 12 N -0.340 5.340 13 C 0.271 3.729 14 N -0.563 5.563 15 C 0.205 3.795 16 N -0.360 5.360 17 C -0.081 4.081 18 C -0.106 4.106 19 C 0.169 3.831 20 N -0.643 5.643 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.264 1.264 29 C 0.127 3.873 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.416 0.584 34 H 0.163 0.837 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.273 0.727 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.008 0.992 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.181 -12.229 -28.258 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.056 3.944 3 H 0.076 0.924 4 N -0.347 5.347 5 C 0.341 3.659 6 O -0.466 6.466 7 C -0.128 4.128 8 C -0.098 4.098 9 C -0.101 4.101 10 C -0.113 4.113 11 C 0.030 3.970 12 N -0.124 5.124 13 C -0.023 4.023 14 N -0.289 5.289 15 C -0.097 4.097 16 N -0.185 5.185 17 C -0.102 4.102 18 C -0.126 4.126 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.364 4.364 22 H 0.102 0.898 23 C -0.262 4.262 24 N -0.603 5.603 25 Si 0.807 3.193 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.189 1.189 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.180 0.820 35 H 0.206 0.794 36 H 0.199 0.801 37 H 0.289 0.711 38 H 0.263 0.737 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.864 -10.883 -27.789 29.857 hybrid contribution 0.327 0.645 1.365 1.545 sum 1.192 -10.238 -26.424 28.363 Atomic orbital electron populations 1.22047 0.93973 1.03310 1.01673 1.20790 0.94788 0.95880 0.82953 0.92420 1.45768 1.65951 1.14684 1.08307 1.18622 0.77199 0.86076 0.84022 1.90780 1.52333 1.17804 1.85687 1.19695 1.05052 0.95817 0.92282 1.21844 0.95120 0.91433 1.01447 1.21496 0.96498 1.02277 0.89857 1.21551 0.98526 0.89388 1.01811 1.17675 1.04254 0.92456 0.82576 1.47826 1.48024 1.07399 1.09162 1.27206 0.93313 1.02264 0.79544 1.70666 1.25080 0.99959 1.33193 1.26777 0.94844 0.99817 0.88283 1.78223 1.26607 0.93516 1.20199 1.20798 0.97954 1.00279 0.91205 1.23449 0.96043 1.00532 0.92588 1.22144 0.88345 0.93640 0.91574 1.46492 1.16966 1.72266 1.01242 1.19447 0.97315 1.35758 0.83882 0.89801 1.25653 0.98330 1.01419 1.00755 1.70013 1.18826 1.46987 1.24472 0.85058 0.77264 0.77924 0.79048 1.21894 1.21877 1.18855 1.22688 0.94827 0.98587 0.83692 0.90239 0.91884 0.93219 0.74530 0.81958 0.79354 0.80119 0.71127 0.73693 0.87019 0.86929 0.97467 0.93489 0.94239 0.91351 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.43 71.98 0.68 -3.42 16 2 C 0.16 4.80 2.29 44.99 0.10 4.90 16 3 H 0.06 2.13 7.49 -2.39 -0.02 2.11 16 4 N -0.70 -16.25 4.90 -445.41 -2.18 -18.43 16 5 C 0.55 15.38 7.74 86.79 0.67 16.05 16 6 O -0.58 -22.24 16.01 -3.90 -0.06 -22.30 16 7 C -0.12 -2.58 5.87 -20.10 -0.12 -2.70 16 8 C -0.08 -0.84 9.54 22.54 0.21 -0.63 16 9 C -0.08 -0.40 10.02 22.21 0.22 -0.18 16 10 C -0.09 -0.61 9.47 22.44 0.21 -0.40 16 11 C 0.12 2.05 6.69 38.04 0.25 2.30 16 12 N -0.34 -6.26 3.82 -191.36 -0.73 -6.99 16 13 C 0.27 3.29 11.98 180.26 2.16 5.45 16 14 N -0.56 -9.75 11.19 -203.73 -2.28 -12.03 16 15 C 0.20 3.77 13.03 180.75 2.35 6.13 16 16 N -0.36 -8.56 12.05 -61.21 -0.74 -9.30 16 17 C -0.08 -1.91 9.23 22.65 0.21 -1.70 16 18 C -0.11 -3.56 3.35 -10.14 -0.03 -3.59 16 19 C 0.17 7.93 7.02 86.44 0.61 8.54 16 20 N -0.64 -32.72 3.70 -716.10 -2.65 -35.37 16 21 C -0.24 -13.20 10.69 84.03 0.90 -12.30 16 22 H 0.08 4.47 7.84 -2.91 -0.02 4.44 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.95 -57.87 11.43 21.65 0.25 -57.62 16 25 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 29 C 0.13 4.83 8.38 86.49 0.73 5.56 16 30 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.42 6.49 6.63 -92.70 -0.61 5.88 16 34 H 0.16 0.84 6.40 -2.91 -0.02 0.82 16 35 H 0.19 -0.64 8.06 -2.91 -0.02 -0.66 16 36 H 0.18 -0.46 6.79 -2.91 -0.02 -0.48 16 37 H 0.27 -0.12 7.09 -2.91 -0.02 -0.14 16 38 H 0.25 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.11 3.47 7.33 -2.91 -0.02 3.45 16 40 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.01 0.38 8.04 -2.38 -0.02 0.36 16 42 H 0.05 2.44 7.20 -2.38 -0.02 2.43 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -87.81 382.24 3.67 -84.14 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.41 Total: 9.73 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 9.63 Total: 20.55 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -8.34 Total: -139.74 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -87.81 3.67 -84.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970401588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.174 kcal (2) G-P(sol) polarization free energy of solvation -87.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds