Wall clock time and date at job start Wed Apr 1 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 N 1.46498 * 109.46916 * 240.00108 * 2 1 3 5 5 C 1.34770 * 120.00112 * 84.99884 * 4 2 1 6 6 O 1.21513 * 120.00387 * 0.02562 * 5 4 2 7 7 C 1.48160 * 119.99994 * 179.97438 * 5 4 2 8 8 C 1.39944 * 120.88970 * 0.02562 * 7 5 4 9 9 C 1.38064 * 119.13614 * 180.02562 * 8 7 5 10 10 N 1.31846 * 120.98061 * 0.02562 * 9 8 7 11 11 C 1.32235 * 121.97208 * 0.02562 * 10 9 8 12 12 N 1.39829 * 119.62447 * 179.97438 * 11 10 9 13 13 C 1.35846 * 126.10310 * 359.73232 * 12 11 10 14 14 C 1.35279 * 107.61176 * 179.83889 * 13 12 11 15 15 C 1.39949 * 107.97048 * 0.42306 * 14 13 12 16 16 N 1.30814 * 108.37132 * 359.73977 * 15 14 13 17 17 C 1.38916 * 120.75009 * 359.97438 * 11 10 9 18 18 C 1.53007 * 109.47161 * 119.99690 * 2 1 3 19 19 C 1.53945 * 113.74083 * 281.82209 * 18 2 1 20 20 N 1.47811 * 86.03161 * 222.08479 * 19 18 2 21 21 C 1.36947 * 134.45247 * 204.64422 * 20 19 18 22 22 H 1.07999 * 119.99842 * 179.86984 * 21 20 19 23 23 C 1.38809 * 119.99864 * 359.87198 * 21 20 19 24 24 N 1.31614 * 120.00206 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47464 * 59.99790 * 25 23 21 27 27 H 1.48505 * 109.47080 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47341 * 299.99818 * 25 23 21 29 29 C 1.47570 * 91.05635 * 24.55215 * 20 19 18 30 30 H 1.09003 * 109.46709 * 300.07114 * 1 2 3 31 31 H 1.08991 * 109.47041 * 60.07101 * 1 2 3 32 32 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99537 * 264.99730 * 4 2 1 34 34 H 1.07998 * 120.43634 * 0.04322 * 8 7 5 35 35 H 1.07995 * 119.50571 * 179.72143 * 9 8 7 36 36 H 1.07996 * 126.18917 * 359.97207 * 13 12 11 37 37 H 1.08006 * 126.01032 * 180.16280 * 14 13 12 38 38 H 1.08004 * 125.81430 * 179.69635 * 15 14 13 39 39 H 1.07998 * 120.52593 * 180.02562 * 17 11 10 40 40 H 1.08996 * 112.93996 * 53.41694 * 18 2 1 41 41 H 1.08993 * 113.77125 * 336.34777 * 19 18 2 42 42 H 1.09003 * 113.76461 * 107.74902 * 19 18 2 43 43 H 0.97005 * 119.99925 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.77497 * 221.15398 * 29 20 19 45 45 H 1.09002 * 113.87655 * 89.76612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8584 1.1608 -2.4116 7 6 2.6413 -0.7166 -3.5667 8 6 2.9795 -2.0739 -3.5249 9 6 3.4370 -2.6884 -4.6735 10 7 3.5584 -2.0155 -5.8008 11 6 3.2519 -0.7321 -5.8868 12 7 3.4000 -0.0662 -7.1074 13 6 3.8485 -0.6121 -8.2677 14 6 3.8388 0.3603 -9.2081 15 6 3.3809 1.5380 -8.6067 16 7 3.1182 1.2844 -7.3506 17 6 2.7843 -0.0377 -4.7781 18 6 2.0401 -0.7212 1.2493 19 6 1.9745 0.1331 2.5283 20 7 3.3099 -0.4177 2.8416 21 6 4.0195 -0.6143 3.9962 22 1 5.0067 -1.0503 3.9557 23 6 3.4699 -0.2530 5.2186 24 7 2.2670 0.2787 5.2680 25 14 4.4382 -0.5204 6.7935 26 1 5.7080 0.2469 6.7303 27 1 3.6359 -0.0543 7.9530 28 1 4.7407 -1.9660 6.9493 29 6 3.5702 -0.6729 1.4116 30 1 -0.3633 0.5150 0.8894 31 1 -0.3633 0.5127 -0.8905 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6317 -1.1526 34 1 2.8836 -2.6336 -2.6063 35 1 3.7039 -3.7345 -4.6469 36 1 4.1549 -1.6374 -8.4135 37 1 4.1365 0.2484 -10.2403 38 1 3.2648 2.4938 -9.0961 39 1 2.5346 1.0104 -4.8525 40 1 1.6176 -1.7192 1.3659 41 1 1.9752 1.2066 2.3401 42 1 1.1954 -0.1776 3.2246 43 1 1.8831 0.5315 6.1222 44 1 4.0628 -1.6257 1.2178 45 1 4.0409 0.1623 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970402346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:47 Heat of formation + Delta-G solvation = 149.660157 kcal Electronic energy + Delta-G solvation = -28136.033385 eV Core-core repulsion = 24157.903543 eV Total energy + Delta-G solvation = -3978.129842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93505 -40.73145 -39.48514 -38.05395 -35.01163 -34.14567 -33.08046 -32.16574 -30.91659 -30.35048 -29.70373 -27.51925 -25.59430 -24.72315 -24.40300 -23.88946 -22.35172 -21.34953 -21.02309 -20.41932 -19.49339 -18.55339 -17.49769 -16.96159 -16.57994 -16.01004 -15.96095 -15.77788 -15.34026 -15.01255 -14.79698 -14.55514 -14.23293 -14.02337 -13.86788 -13.82062 -13.64954 -13.20235 -13.15029 -12.49001 -12.36658 -12.12974 -11.66175 -11.44544 -11.27846 -11.21055 -10.91844 -10.87362 -10.74453 -10.52401 -10.41706 -10.30854 -10.13258 -9.86760 -9.76602 -9.58150 -9.47047 -8.99732 -8.81638 -8.70296 -6.90660 -5.79170 -3.11505 0.10957 0.43328 1.61412 1.70844 2.39695 2.72351 2.92868 3.37920 3.42171 3.43465 3.46221 3.84583 4.06963 4.23545 4.42714 4.46842 4.50204 4.62814 4.68997 5.04439 5.05858 5.10936 5.21528 5.27954 5.34407 5.37893 5.49739 5.53660 5.57533 5.61482 5.75620 5.89115 5.93079 6.01254 6.13480 6.20180 6.30128 6.38621 6.48147 6.57803 6.65277 6.71739 6.95237 7.18846 7.31871 7.41672 7.43686 7.52813 7.95590 8.07543 9.02190 9.68545 10.57034 11.38007 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.001941 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.960882 B =14425.122011 C =14714.916579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.706 5.706 5 C 0.555 3.445 6 O -0.524 6.524 7 C -0.057 4.057 8 C -0.155 4.155 9 C 0.133 3.867 10 N -0.496 5.496 11 C 0.366 3.634 12 N -0.327 5.327 13 C 0.079 3.921 14 C -0.266 4.266 15 C 0.064 3.936 16 N -0.280 5.280 17 C -0.109 4.109 18 C -0.148 4.148 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.225 4.225 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.125 3.875 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.399 0.601 34 H 0.150 0.850 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.157 0.843 38 H 0.194 0.806 39 H 0.161 0.839 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.040 0.960 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -5.980 -27.131 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.357 5.357 5 C 0.340 3.660 6 O -0.401 6.401 7 C -0.069 4.069 8 C -0.176 4.176 9 C -0.025 4.025 10 N -0.209 5.209 11 C 0.139 3.861 12 N -0.105 5.105 13 C -0.063 4.063 14 C -0.294 4.294 15 C -0.125 4.125 16 N -0.098 5.098 17 C -0.132 4.132 18 C -0.168 4.168 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.001 4.001 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.167 0.833 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.785 -5.097 -26.325 26.826 hybrid contribution 0.762 -0.458 0.751 1.163 sum -0.023 -5.555 -25.574 26.170 Atomic orbital electron populations 1.22116 0.95121 1.01949 1.02502 1.21225 0.94012 0.97598 0.82614 0.89143 1.46047 1.66062 1.14099 1.09485 1.18006 0.78544 0.86595 0.82890 1.90810 1.49495 1.15116 1.84637 1.20384 0.98218 0.93989 0.94302 1.22411 0.99974 0.94307 1.00957 1.22502 0.94244 0.99833 0.85875 1.66718 1.17835 1.06365 1.30027 1.17525 0.96604 0.88410 0.83572 1.45791 1.50385 1.07878 1.06464 1.22931 0.97809 1.00645 0.84879 1.21687 1.13483 0.92738 1.01474 1.24215 0.97017 1.00107 0.91135 1.77579 1.23528 0.90592 1.18140 1.21709 0.98560 1.02844 0.90048 1.23887 0.97635 1.00838 0.94417 1.22232 0.89672 0.93900 0.89176 1.45974 1.16320 1.71881 0.99597 1.18970 0.98468 1.34995 0.82796 0.90357 1.24782 0.97069 1.01050 0.97517 1.69791 1.15359 1.47125 1.24561 0.86202 0.78902 0.77824 0.82825 1.21204 1.21518 1.21086 1.22538 0.92964 0.97698 0.86948 0.90814 0.92741 0.92628 0.76592 0.83257 0.80767 0.79978 0.82539 0.78895 0.82105 0.89189 0.95355 0.90604 0.93537 0.94133 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.44 37.16 0.35 -1.77 16 2 C 0.15 2.19 2.29 -67.93 -0.16 2.03 16 3 H 0.09 1.55 7.48 -51.93 -0.39 1.16 16 4 N -0.71 -8.52 4.90 -54.65 -0.27 -8.79 16 5 C 0.55 7.52 7.76 -12.19 -0.09 7.43 16 6 O -0.52 -9.11 16.10 5.35 0.09 -9.03 16 7 C -0.06 -0.64 5.91 -104.68 -0.62 -1.26 16 8 C -0.16 -1.21 9.61 -39.01 -0.37 -1.59 16 9 C 0.13 0.98 11.17 -17.61 -0.20 0.78 16 10 N -0.50 -4.91 9.83 -12.34 -0.12 -5.03 16 11 C 0.37 4.25 7.55 -154.43 -1.17 3.09 16 12 N -0.33 -3.74 3.81 -12.12 -0.05 -3.79 16 13 C 0.08 0.69 11.10 -16.83 -0.19 0.50 16 14 C -0.27 -1.94 10.80 -40.00 -0.43 -2.37 16 15 C 0.06 0.53 12.02 -17.34 -0.21 0.33 16 16 N -0.28 -3.30 11.83 30.64 0.36 -2.93 16 17 C -0.11 -1.34 9.27 -38.82 -0.36 -1.70 16 18 C -0.15 -2.51 3.35 -89.69 -0.30 -2.81 16 19 C 0.18 3.98 6.98 -2.84 -0.02 3.96 16 20 N -0.61 -15.40 3.70 -177.75 -0.66 -16.06 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.92 -27.06 11.39 55.49 0.63 -26.43 16 25 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.12 2.43 8.38 -2.97 -0.02 2.40 16 30 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 3.66 6.74 -40.82 -0.28 3.38 16 34 H 0.15 0.74 6.53 -52.49 -0.34 0.40 16 35 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.18 1.19 8.05 -52.49 -0.42 0.77 16 37 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.19 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.16 2.21 7.37 -52.49 -0.39 1.82 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.08 1.89 7.17 -51.93 -0.37 1.51 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -35.53 384.69 -9.23 -44.77 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.95 Total: 2.21 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -4.04 Total: 2.29 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.10 Total: -63.03 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.53 -9.23 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970402346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.428 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds