Wall clock time and date at job start Wed Apr 1 2020 00:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 N 1.46498 * 109.46916 * 240.00108 * 2 1 3 5 5 C 1.34770 * 120.00112 * 84.99884 * 4 2 1 6 6 O 1.21513 * 120.00387 * 0.02562 * 5 4 2 7 7 C 1.48160 * 119.99994 * 179.97438 * 5 4 2 8 8 C 1.39944 * 120.88970 * 0.02562 * 7 5 4 9 9 C 1.38064 * 119.13614 * 180.02562 * 8 7 5 10 10 N 1.31846 * 120.98061 * 0.02562 * 9 8 7 11 11 C 1.32235 * 121.97208 * 0.02562 * 10 9 8 12 12 N 1.39829 * 119.62447 * 179.97438 * 11 10 9 13 13 C 1.35846 * 126.10310 * 359.73232 * 12 11 10 14 14 C 1.35279 * 107.61176 * 179.83889 * 13 12 11 15 15 C 1.39949 * 107.97048 * 0.42306 * 14 13 12 16 16 N 1.30814 * 108.37132 * 359.73977 * 15 14 13 17 17 C 1.38916 * 120.75009 * 359.97438 * 11 10 9 18 18 C 1.53007 * 109.47161 * 119.99690 * 2 1 3 19 19 C 1.53945 * 113.74083 * 281.82209 * 18 2 1 20 20 N 1.47811 * 86.03161 * 222.08479 * 19 18 2 21 21 C 1.36947 * 134.45247 * 204.64422 * 20 19 18 22 22 H 1.07999 * 119.99842 * 179.86984 * 21 20 19 23 23 C 1.38809 * 119.99864 * 359.87198 * 21 20 19 24 24 N 1.31614 * 120.00206 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99646 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47464 * 59.99790 * 25 23 21 27 27 H 1.48505 * 109.47080 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47341 * 299.99818 * 25 23 21 29 29 C 1.47570 * 91.05635 * 24.55215 * 20 19 18 30 30 H 1.09003 * 109.46709 * 300.07114 * 1 2 3 31 31 H 1.08991 * 109.47041 * 60.07101 * 1 2 3 32 32 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 33 33 H 0.97001 * 119.99537 * 264.99730 * 4 2 1 34 34 H 1.07998 * 120.43634 * 0.04322 * 8 7 5 35 35 H 1.07995 * 119.50571 * 179.72143 * 9 8 7 36 36 H 1.07996 * 126.18917 * 359.97207 * 13 12 11 37 37 H 1.08006 * 126.01032 * 180.16280 * 14 13 12 38 38 H 1.08004 * 125.81430 * 179.69635 * 15 14 13 39 39 H 1.07998 * 120.52593 * 180.02562 * 17 11 10 40 40 H 1.08996 * 112.93996 * 53.41694 * 18 2 1 41 41 H 1.08993 * 113.77125 * 336.34777 * 19 18 2 42 42 H 1.09003 * 113.76461 * 107.74902 * 19 18 2 43 43 H 0.97005 * 119.99925 * 180.02562 * 24 23 21 44 44 H 1.08999 * 113.77497 * 221.15398 * 29 20 19 45 45 H 1.09002 * 113.87655 * 89.76612 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8584 1.1608 -2.4116 7 6 2.6413 -0.7166 -3.5667 8 6 2.9795 -2.0739 -3.5249 9 6 3.4370 -2.6884 -4.6735 10 7 3.5584 -2.0155 -5.8008 11 6 3.2519 -0.7321 -5.8868 12 7 3.4000 -0.0662 -7.1074 13 6 3.8485 -0.6121 -8.2677 14 6 3.8388 0.3603 -9.2081 15 6 3.3809 1.5380 -8.6067 16 7 3.1182 1.2844 -7.3506 17 6 2.7843 -0.0377 -4.7781 18 6 2.0401 -0.7212 1.2493 19 6 1.9745 0.1331 2.5283 20 7 3.3099 -0.4177 2.8416 21 6 4.0195 -0.6143 3.9962 22 1 5.0067 -1.0503 3.9557 23 6 3.4699 -0.2530 5.2186 24 7 2.2670 0.2787 5.2680 25 14 4.4382 -0.5204 6.7935 26 1 5.7080 0.2469 6.7303 27 1 3.6359 -0.0543 7.9530 28 1 4.7407 -1.9660 6.9493 29 6 3.5702 -0.6729 1.4116 30 1 -0.3633 0.5150 0.8894 31 1 -0.3633 0.5127 -0.8905 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6317 -1.1526 34 1 2.8836 -2.6336 -2.6063 35 1 3.7039 -3.7345 -4.6469 36 1 4.1549 -1.6374 -8.4135 37 1 4.1365 0.2484 -10.2403 38 1 3.2648 2.4938 -9.0961 39 1 2.5346 1.0104 -4.8525 40 1 1.6176 -1.7192 1.3659 41 1 1.9752 1.2066 2.3401 42 1 1.1954 -0.1776 3.2246 43 1 1.8831 0.5315 6.1222 44 1 4.0628 -1.6257 1.2178 45 1 4.0409 0.1623 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970402346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:46 Heat of formation + Delta-G solvation = 126.300642 kcal Electronic energy + Delta-G solvation = -28137.046329 eV Core-core repulsion = 24157.903543 eV Total energy + Delta-G solvation = -3979.142787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62217 -41.61740 -40.55601 -39.54235 -36.34138 -34.93709 -34.15237 -33.80614 -31.92737 -31.26073 -30.40404 -29.33337 -26.81508 -26.13912 -25.53739 -25.05229 -23.34204 -22.46754 -21.78363 -21.47637 -20.80862 -19.56922 -18.77903 -18.31678 -17.66833 -16.93660 -16.87245 -16.73133 -16.61798 -16.20999 -15.93361 -15.79406 -15.41987 -15.12077 -14.96200 -14.80773 -14.55762 -14.44901 -14.06830 -13.70880 -13.44098 -13.26864 -13.19490 -13.08399 -12.95621 -12.66354 -12.43609 -12.06888 -11.86459 -11.82462 -11.65065 -11.58559 -11.40360 -11.20952 -11.14371 -10.85671 -10.82724 -10.26061 -10.16753 -9.37053 -8.92059 -7.90531 -5.23914 -0.63611 -0.33612 0.95735 1.05079 1.45446 1.48730 1.54848 1.75429 1.82060 1.88246 2.47482 2.67575 3.17403 3.29645 3.33131 3.38626 3.43634 3.71995 3.77241 3.84787 3.95525 4.04737 4.08340 4.24755 4.40459 4.44595 4.56360 4.58541 4.65415 4.72517 4.77447 4.80641 4.86429 4.87231 4.95735 5.02597 5.06395 5.25240 5.26570 5.29934 5.42954 5.54782 5.56989 5.64990 5.94327 5.99535 6.30338 6.42823 6.74673 6.92028 7.06669 7.61162 8.56433 9.26243 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.001941 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.960882 B =14425.122011 C =14714.916579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.061 0.939 4 N -0.690 5.690 5 C 0.557 3.443 6 O -0.572 6.572 7 C -0.068 4.068 8 C -0.138 4.138 9 C 0.143 3.857 10 N -0.499 5.499 11 C 0.353 3.647 12 N -0.345 5.345 13 C 0.065 3.935 14 C -0.258 4.258 15 C 0.065 3.935 16 N -0.332 5.332 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.126 3.874 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.187 0.813 35 H 0.222 0.778 36 H 0.202 0.798 37 H 0.189 0.811 38 H 0.224 0.776 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.009 0.991 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -9.225 -28.782 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.079 0.921 4 N -0.342 5.342 5 C 0.343 3.657 6 O -0.451 6.451 7 C -0.080 4.080 8 C -0.158 4.158 9 C -0.015 4.015 10 N -0.213 5.213 11 C 0.126 3.874 12 N -0.123 5.123 13 C -0.075 4.075 14 C -0.286 4.286 15 C -0.124 4.124 16 N -0.151 5.151 17 C -0.156 4.156 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.198 1.198 29 C 0.001 3.999 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.257 0.743 34 H 0.204 0.796 35 H 0.238 0.762 36 H 0.219 0.781 37 H 0.206 0.794 38 H 0.240 0.760 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.331 -8.380 -28.032 29.259 hybrid contribution 0.470 0.540 1.157 1.360 sum 0.800 -7.841 -26.875 28.006 Atomic orbital electron populations 1.22055 0.93800 1.03340 1.01919 1.20849 0.94901 0.95998 0.82658 0.92065 1.45749 1.65505 1.14784 1.08160 1.18352 0.77614 0.86054 0.83669 1.90792 1.51568 1.17381 1.85404 1.20178 0.99716 0.95483 0.92605 1.22793 0.97869 0.92499 1.02687 1.23359 0.92023 1.01386 0.84684 1.66865 1.17807 1.05389 1.31228 1.17633 0.97042 0.89064 0.83624 1.45939 1.51350 1.07957 1.07078 1.23449 0.97730 1.01888 0.84413 1.22117 1.12149 0.91695 1.02606 1.24875 0.95416 1.01745 0.90322 1.77550 1.25729 0.91628 1.20168 1.21524 1.00702 1.01938 0.91432 1.23470 0.96006 1.00597 0.92584 1.22145 0.88308 0.93658 0.91593 1.46415 1.17284 1.72086 1.01215 1.19395 0.98810 1.34102 0.84153 0.89838 1.25633 0.98157 1.01610 1.00718 1.69986 1.16902 1.48637 1.24694 0.85161 0.77371 0.78170 0.78673 1.20758 1.22123 1.19777 1.22701 0.94802 0.98628 0.83752 0.91656 0.93151 0.90188 0.74346 0.79605 0.76179 0.78094 0.79352 0.75950 0.85025 0.86897 0.97332 0.93353 0.94249 0.91423 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.44 71.98 0.68 -3.27 16 2 C 0.16 4.59 2.29 44.99 0.10 4.69 16 3 H 0.06 2.16 7.48 -2.39 -0.02 2.14 16 4 N -0.69 -15.32 4.90 -445.11 -2.18 -17.50 16 5 C 0.56 14.96 7.76 86.88 0.67 15.64 16 6 O -0.57 -20.88 16.10 -3.76 -0.06 -20.94 16 7 C -0.07 -1.48 5.91 -19.90 -0.12 -1.59 16 8 C -0.14 -1.66 9.61 22.64 0.22 -1.44 16 9 C 0.14 1.55 11.17 84.65 0.95 2.49 16 10 N -0.50 -8.85 9.83 -192.94 -1.90 -10.75 16 11 C 0.35 8.19 7.55 132.77 1.00 9.20 16 12 N -0.34 -8.00 3.81 -192.27 -0.73 -8.73 16 13 C 0.07 1.08 11.10 83.39 0.93 2.01 16 14 C -0.26 -3.35 10.80 22.00 0.24 -3.12 16 15 C 0.06 1.04 12.02 85.26 1.02 2.07 16 16 N -0.33 -8.16 11.83 -56.98 -0.67 -8.83 16 17 C -0.13 -3.41 9.27 22.76 0.21 -3.20 16 18 C -0.11 -3.48 3.35 -10.13 -0.03 -3.51 16 19 C 0.17 7.80 6.98 86.44 0.60 8.40 16 20 N -0.64 -32.38 3.70 -716.26 -2.65 -35.04 16 21 C -0.24 -13.15 10.70 84.03 0.90 -12.25 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 23 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 24 N -0.95 -57.41 11.39 21.65 0.25 -57.17 16 25 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 C 0.13 4.71 8.38 86.49 0.72 5.43 16 30 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.42 6.00 6.74 -92.71 -0.62 5.38 16 34 H 0.19 0.79 6.53 -2.91 -0.02 0.77 16 35 H 0.22 0.30 8.06 -2.91 -0.02 0.27 16 36 H 0.20 2.27 8.05 -2.91 -0.02 2.25 16 37 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.13 4.09 7.37 -2.91 -0.02 4.06 16 40 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 42 H 0.05 2.48 7.17 -2.39 -0.02 2.47 16 43 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -82.72 384.69 3.04 -79.68 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.40 Total: 13.60 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 8.56 Total: 18.12 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -7.89 Total: -138.01 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.06 Total: -20.94 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -82.72 3.04 -79.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970402346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.984 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds