Wall clock time and date at job start Wed Apr 1 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21514 * 119.99547 * 359.97438 * 5 4 2 7 7 C 1.48178 * 119.99865 * 180.02562 * 5 4 2 8 8 C 1.39127 * 119.68951 * 179.72057 * 7 5 4 9 9 C 1.39292 * 118.97021 * 179.79252 * 8 7 5 10 10 N 1.39941 * 120.81731 * 180.22364 * 9 8 7 11 11 C 1.35827 * 126.09678 * 184.96669 * 10 9 8 12 12 C 1.35287 * 107.61543 * 179.89840 * 11 10 9 13 13 C 1.39954 * 107.96663 * 0.37104 * 12 11 10 14 14 N 1.30824 * 108.36358 * 359.77094 * 13 12 11 15 15 C 1.39275 * 118.35763 * 0.47527 * 9 8 7 16 16 C 1.38352 * 119.27475 * 359.74821 * 15 9 8 17 17 N 1.31593 * 120.97580 * 0.02562 * 16 15 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.08003 * 119.99220 * 7.55219 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 31 31 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 32 32 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.08002 * 120.51540 * 0.02562 * 8 7 5 35 35 H 1.07999 * 126.19287 * 0.04570 * 11 10 9 36 36 H 1.07997 * 126.01873 * 180.14272 * 12 11 10 37 37 H 1.08004 * 125.81532 * 179.74261 * 13 12 11 38 38 H 1.07997 * 120.36416 * 179.72887 * 15 9 8 39 39 H 1.07995 * 119.50831 * 180.02562 * 16 15 9 40 40 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 41 41 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 42 42 H 1.09004 * 113.52153 * 202.31032 * 19 18 2 43 43 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 44 44 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 45 45 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8585 1.1608 2.4116 7 6 2.6415 -0.7168 3.5669 8 6 2.7775 -0.0151 4.7605 9 6 3.2394 -0.6875 5.8895 10 7 3.3864 -0.0207 7.1110 11 6 3.9135 -0.5421 8.2491 12 6 3.8771 0.4227 9.1967 13 6 3.3042 1.5657 8.6273 14 7 3.0103 1.3017 7.3801 15 6 3.5566 -2.0385 5.7713 16 6 3.3991 -2.6659 4.5483 17 7 2.9560 -2.0050 3.5002 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4180 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.5251 1.0338 4.8119 35 1 4.2950 -1.5447 8.3741 36 1 4.2252 0.3267 10.2145 37 1 3.1335 2.5053 9.1317 38 1 3.9217 -2.5903 6.6249 39 1 3.6435 -3.7134 4.4525 40 1 1.9117 -1.8029 -1.2076 41 1 0.6466 0.4562 -2.4938 42 1 1.6122 -0.7736 -3.4158 43 1 4.1374 4.1310 -3.9035 44 1 3.9431 -1.0113 -2.3358 45 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970409586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:02 Heat of formation + Delta-G solvation = 157.019990 kcal Electronic energy + Delta-G solvation = -28755.192432 eV Core-core repulsion = 24777.381736 eV Total energy + Delta-G solvation = -3977.810696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02410 -40.70305 -39.50918 -38.35485 -35.00694 -34.66970 -32.38957 -32.05097 -30.99507 -30.27070 -30.06545 -27.77757 -25.71897 -25.03635 -24.42574 -23.58894 -22.28656 -21.37615 -21.16738 -20.33213 -19.38564 -18.55271 -17.44050 -17.27866 -16.61466 -16.31183 -15.86302 -15.84507 -15.44817 -15.06255 -15.02403 -14.59860 -14.41447 -14.01296 -13.91310 -13.68953 -13.51378 -13.26341 -13.17169 -13.06069 -12.46448 -12.20454 -11.96924 -11.43861 -11.37530 -11.23734 -11.22954 -10.93624 -10.58852 -10.42553 -10.25640 -10.14232 -9.80858 -9.77079 -9.68684 -9.15739 -9.07107 -8.90128 -8.88238 -8.79310 -7.09792 -6.22210 -3.16069 0.08973 0.44896 1.65215 1.77522 2.31309 2.66971 3.04586 3.45640 3.50705 3.59729 3.69489 3.82478 3.95678 4.10260 4.37199 4.40679 4.60737 4.66013 4.78857 4.81732 4.96393 4.99552 5.09256 5.11960 5.14812 5.34621 5.43389 5.51206 5.56460 5.65308 5.72728 5.90287 5.96434 5.98046 6.09944 6.10644 6.24615 6.30948 6.35751 6.45802 6.53894 6.54678 6.66977 6.94051 7.10564 7.18530 7.28000 7.68608 8.27641 8.30814 9.04646 9.57177 10.43426 11.27834 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.002714 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.620862 B =10315.246539 C =11022.950041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.104 0.896 4 N -0.698 5.698 5 C 0.567 3.433 6 O -0.521 6.521 7 C 0.115 3.885 8 C -0.117 4.117 9 C 0.203 3.797 10 N -0.331 5.331 11 C 0.053 3.947 12 C -0.254 4.254 13 C 0.061 3.939 14 N -0.278 5.278 15 C -0.182 4.182 16 C 0.129 3.871 17 N -0.466 5.466 18 C -0.141 4.141 19 C 0.131 3.869 20 N -0.627 5.627 21 C -0.301 4.301 22 H 0.083 0.917 23 C -0.024 4.024 24 N -0.936 5.936 25 Si 1.068 2.932 26 H -0.296 1.296 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.100 3.900 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.407 0.593 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.194 0.806 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.260 0.740 44 H 0.046 0.954 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -17.136 25.343 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.122 0.878 4 N -0.348 5.348 5 C 0.350 3.650 6 O -0.396 6.396 7 C -0.024 4.024 8 C -0.139 4.139 9 C 0.102 3.898 10 N -0.108 5.108 11 C -0.088 4.088 12 C -0.282 4.282 13 C -0.128 4.128 14 N -0.096 5.096 15 C -0.206 4.206 16 C -0.030 4.030 17 N -0.178 5.178 18 C -0.161 4.161 19 C 0.004 3.996 20 N -0.356 5.356 21 C -0.427 4.427 22 H 0.101 0.899 23 C -0.223 4.223 24 N -0.578 5.578 25 Si 0.901 3.099 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.215 1.215 29 C -0.026 4.026 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.176 0.824 37 H 0.211 0.789 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.305 -15.985 23.846 28.898 hybrid contribution -0.852 -0.468 1.052 1.432 sum -4.157 -16.453 24.898 30.131 Atomic orbital electron populations 1.22111 0.95160 1.01592 1.02624 1.20741 0.93602 0.98215 0.81432 0.87758 1.45912 1.65409 1.14496 1.09028 1.17710 0.78595 0.86103 0.82618 1.90847 1.49678 1.14710 1.84350 1.21198 0.97404 0.89968 0.93795 1.21869 0.98712 1.03156 0.90206 1.17646 0.97618 0.91028 0.83546 1.45972 1.47260 1.10021 1.07564 1.22823 0.99449 1.00740 0.85748 1.21693 1.11384 0.93465 1.01639 1.24234 0.96950 1.00140 0.91466 1.77617 1.21911 0.92470 1.17570 1.22015 1.04776 0.92468 1.01309 1.22677 0.93558 1.00314 0.86488 1.67608 1.10424 1.07775 1.32007 1.23191 0.99467 0.98370 0.95079 1.22359 0.92706 0.91878 0.92669 1.46038 1.13247 1.12640 1.63701 1.20139 0.96362 0.88605 1.37592 0.89935 1.25651 0.96081 0.99163 1.01397 1.70909 1.37599 1.15112 1.34193 0.83751 0.75952 0.74549 0.75669 1.22332 1.22142 1.21476 1.22819 0.94081 0.91233 0.94445 0.92469 0.90990 0.92774 0.75697 0.81928 0.80171 0.82438 0.78936 0.83584 0.80868 0.90276 0.93206 0.94188 0.92970 0.93639 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.29 37.16 0.35 -1.96 16 2 C 0.16 2.81 2.43 -67.93 -0.16 2.65 16 3 H 0.10 2.30 7.36 -51.93 -0.38 1.92 16 4 N -0.70 -10.67 5.07 -54.64 -0.28 -10.95 16 5 C 0.57 9.52 7.78 -12.17 -0.09 9.42 16 6 O -0.52 -10.66 15.98 5.35 0.09 -10.58 16 7 C 0.11 1.59 6.75 -83.05 -0.56 1.03 16 8 C -0.12 -1.57 9.26 -38.86 -0.36 -1.93 16 9 C 0.20 2.18 6.72 -83.38 -0.56 1.62 16 10 N -0.33 -3.49 3.81 -10.41 -0.04 -3.52 16 11 C 0.05 0.37 10.85 -16.83 -0.18 0.19 16 12 C -0.25 -1.67 10.80 -39.99 -0.43 -2.10 16 13 C 0.06 0.51 12.02 -17.34 -0.21 0.30 16 14 N -0.28 -3.33 11.98 30.64 0.37 -2.96 16 15 C -0.18 -1.33 9.54 -39.15 -0.37 -1.70 16 16 C 0.13 0.99 11.17 -17.61 -0.20 0.80 16 17 N -0.47 -5.24 9.54 -9.87 -0.09 -5.33 16 18 C -0.14 -2.39 3.73 -89.97 -0.34 -2.72 16 19 C 0.13 2.53 8.08 -8.52 -0.07 2.46 16 20 N -0.63 -15.68 3.49 -184.63 -0.64 -16.32 16 21 C -0.30 -8.92 11.08 -15.06 -0.17 -9.08 16 22 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 23 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 24 N -0.94 -30.60 13.70 55.49 0.76 -29.84 16 25 Si 1.07 28.24 25.16 -169.99 -4.28 23.96 16 26 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 27 H -0.29 -7.59 6.51 56.52 0.37 -7.22 16 28 H -0.29 -7.00 6.20 56.52 0.35 -6.65 16 29 C 0.10 2.14 5.24 -8.38 -0.04 2.10 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.06 6.50 -51.93 -0.34 0.73 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 5.20 7.93 -40.82 -0.32 4.87 16 34 H 0.16 2.48 7.39 -52.49 -0.39 2.09 16 35 H 0.18 0.54 7.16 -52.49 -0.38 0.16 16 36 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.19 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.15 0.51 6.90 -52.49 -0.36 0.15 16 39 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 8.38 8.73 -40.82 -0.36 8.03 16 44 H 0.05 0.95 7.66 -51.93 -0.40 0.55 16 45 H 0.05 1.21 4.71 -51.93 -0.24 0.96 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -38.59 374.34 -7.74 -46.33 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.76 Total: 3.36 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.50 Total: 0.22 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: 0.07 Total: -68.94 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 28.24 SS G_CDS: -4.28 Total: 23.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.59 -7.74 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970409586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.350 kcal (2) G-P(sol) polarization free energy of solvation -38.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds