Wall clock time and date at job start Wed Apr 1 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21514 * 119.99547 * 359.97438 * 5 4 2 7 7 C 1.48178 * 119.99865 * 180.02562 * 5 4 2 8 8 C 1.39127 * 119.68951 * 179.72057 * 7 5 4 9 9 C 1.39292 * 118.97021 * 179.79252 * 8 7 5 10 10 N 1.39941 * 120.81731 * 180.22364 * 9 8 7 11 11 C 1.35827 * 126.09678 * 184.96669 * 10 9 8 12 12 C 1.35287 * 107.61543 * 179.89840 * 11 10 9 13 13 C 1.39954 * 107.96663 * 0.37104 * 12 11 10 14 14 N 1.30824 * 108.36358 * 359.77094 * 13 12 11 15 15 C 1.39275 * 118.35763 * 0.47527 * 9 8 7 16 16 C 1.38352 * 119.27475 * 359.74821 * 15 9 8 17 17 N 1.31593 * 120.97580 * 0.02562 * 16 15 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.08003 * 119.99220 * 7.55219 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 31 31 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 32 32 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.08002 * 120.51540 * 0.02562 * 8 7 5 35 35 H 1.07999 * 126.19287 * 0.04570 * 11 10 9 36 36 H 1.07997 * 126.01873 * 180.14272 * 12 11 10 37 37 H 1.08004 * 125.81532 * 179.74261 * 13 12 11 38 38 H 1.07997 * 120.36416 * 179.72887 * 15 9 8 39 39 H 1.07995 * 119.50831 * 180.02562 * 16 15 9 40 40 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 41 41 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 42 42 H 1.09004 * 113.52153 * 202.31032 * 19 18 2 43 43 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 44 44 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 45 45 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8585 1.1608 2.4116 7 6 2.6415 -0.7168 3.5669 8 6 2.7775 -0.0151 4.7605 9 6 3.2394 -0.6875 5.8895 10 7 3.3864 -0.0207 7.1110 11 6 3.9135 -0.5421 8.2491 12 6 3.8771 0.4227 9.1967 13 6 3.3042 1.5657 8.6273 14 7 3.0103 1.3017 7.3801 15 6 3.5566 -2.0385 5.7713 16 6 3.3991 -2.6659 4.5483 17 7 2.9560 -2.0050 3.5002 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4180 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.5251 1.0338 4.8119 35 1 4.2950 -1.5447 8.3741 36 1 4.2252 0.3267 10.2145 37 1 3.1335 2.5053 9.1317 38 1 3.9217 -2.5903 6.6249 39 1 3.6435 -3.7134 4.4525 40 1 1.9117 -1.8029 -1.2076 41 1 0.6466 0.4562 -2.4938 42 1 1.6122 -0.7736 -3.4158 43 1 4.1374 4.1310 -3.9035 44 1 3.9431 -1.0113 -2.3358 45 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970409586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:02 Heat of formation + Delta-G solvation = 126.823289 kcal Electronic energy + Delta-G solvation = -28756.501859 eV Core-core repulsion = 24777.381736 eV Total energy + Delta-G solvation = -3979.120123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66679 -41.69022 -40.79632 -39.75864 -36.35809 -35.52567 -34.54320 -32.97843 -31.95205 -31.20598 -30.82150 -29.65046 -27.17407 -26.19563 -25.30155 -24.96766 -23.47788 -22.62972 -21.86469 -21.43841 -20.76799 -19.76568 -19.30052 -18.28141 -17.84375 -17.12420 -17.01556 -16.77843 -16.62987 -16.27165 -16.10974 -15.90009 -15.67182 -15.23282 -15.11246 -14.88984 -14.74985 -14.52827 -14.48456 -13.74075 -13.69654 -13.44425 -13.21229 -13.16573 -12.86434 -12.72828 -12.28498 -12.10335 -12.09231 -11.85303 -11.74308 -11.50238 -11.28515 -11.08195 -10.91863 -10.82458 -10.53386 -10.40410 -10.15933 -9.53145 -9.21202 -8.62993 -5.47252 -0.67907 -0.32641 1.01536 1.16833 1.29186 1.40986 1.58799 1.62149 1.78921 1.89251 2.48680 2.68892 2.96562 3.02761 3.18755 3.23460 3.45148 3.51038 3.72192 3.74176 3.86569 3.99933 4.05884 4.30426 4.34071 4.35245 4.50414 4.52553 4.56784 4.58541 4.65926 4.67818 4.71488 4.75484 4.84420 4.85223 4.99521 5.05306 5.17913 5.25043 5.29328 5.32805 5.52982 5.56239 5.94424 5.98230 6.31566 6.50763 6.66892 6.69444 7.07945 7.32265 8.27663 8.89104 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.002714 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.620862 B =10315.246539 C =11022.950041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.165 3.835 3 H 0.044 0.956 4 N -0.684 5.684 5 C 0.560 3.440 6 O -0.576 6.576 7 C 0.095 3.905 8 C -0.142 4.142 9 C 0.192 3.808 10 N -0.348 5.348 11 C 0.056 3.944 12 C -0.255 4.255 13 C 0.057 3.943 14 N -0.347 5.347 15 C -0.153 4.153 16 C 0.138 3.862 17 N -0.473 5.473 18 C -0.108 4.108 19 C 0.128 3.872 20 N -0.665 5.665 21 C -0.280 4.280 22 H 0.050 0.950 23 C -0.090 4.090 24 N -0.976 5.976 25 Si 1.109 2.891 26 H -0.305 1.305 27 H -0.295 1.295 28 H -0.247 1.247 29 C 0.089 3.911 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.215 0.785 38 H 0.198 0.802 39 H 0.226 0.774 40 H 0.138 0.862 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.246 0.754 44 H 0.069 0.931 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -23.394 28.091 36.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.060 3.940 3 H 0.062 0.938 4 N -0.335 5.335 5 C 0.345 3.655 6 O -0.455 6.455 7 C -0.042 4.042 8 C -0.166 4.166 9 C 0.091 3.909 10 N -0.126 5.126 11 C -0.083 4.083 12 C -0.283 4.283 13 C -0.131 4.131 14 N -0.165 5.165 15 C -0.176 4.176 16 C -0.022 4.022 17 N -0.185 5.185 18 C -0.127 4.127 19 C 0.003 3.997 20 N -0.394 5.394 21 C -0.408 4.408 22 H 0.068 0.932 23 C -0.281 4.281 24 N -0.622 5.622 25 Si 0.937 3.063 26 H -0.233 1.233 27 H -0.224 1.224 28 H -0.172 1.172 29 C -0.036 4.036 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.244 0.756 36 H 0.207 0.793 37 H 0.231 0.769 38 H 0.215 0.785 39 H 0.242 0.758 40 H 0.156 0.844 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.741 -22.330 26.595 34.834 hybrid contribution -1.135 1.429 0.364 1.861 sum -3.876 -20.901 26.959 34.332 Atomic orbital electron populations 1.22021 0.93080 1.03670 1.01752 1.20534 0.95183 0.95554 0.82700 0.93765 1.45725 1.64844 1.14975 1.07983 1.18284 0.77696 0.85672 0.83867 1.90809 1.52096 1.17233 1.85368 1.20596 0.99975 0.91300 0.92282 1.21633 1.01083 1.01894 0.91973 1.17912 0.97619 0.92430 0.82977 1.46101 1.48288 1.09866 1.08322 1.23682 0.97882 1.02574 0.84196 1.22156 1.10651 0.92421 1.03042 1.24824 0.95796 1.01755 0.90744 1.77592 1.24776 0.94408 1.19726 1.22587 1.01638 0.90521 1.02838 1.23601 0.91180 1.01967 0.85467 1.67592 1.11044 1.06119 1.33792 1.23008 0.95391 1.01203 0.93125 1.22654 0.90863 0.91273 0.94901 1.46162 1.16401 1.12453 1.64390 1.20005 0.95307 0.90748 1.34782 0.93175 1.26919 0.98639 0.99773 1.02818 1.70999 1.37812 1.16807 1.36602 0.83250 0.73279 0.75246 0.74573 1.23322 1.22374 1.17181 1.23099 0.96335 0.90356 0.93794 0.94035 0.91286 0.89039 0.73781 0.85742 0.75607 0.79251 0.76895 0.78498 0.75797 0.84424 0.92958 0.91250 0.94507 0.91331 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.29 71.98 0.67 -3.52 16 2 C 0.16 5.61 2.43 44.99 0.11 5.71 16 3 H 0.04 2.07 7.36 -2.39 -0.02 2.05 16 4 N -0.68 -20.49 5.07 -445.07 -2.26 -22.74 16 5 C 0.56 19.77 7.78 86.88 0.68 20.45 16 6 O -0.58 -26.02 15.98 -3.76 -0.06 -26.08 16 7 C 0.10 2.68 6.75 41.86 0.28 2.96 16 8 C -0.14 -4.08 9.26 22.74 0.21 -3.87 16 9 C 0.19 3.91 6.72 38.35 0.26 4.17 16 10 N -0.35 -6.98 3.81 -186.86 -0.71 -7.69 16 11 C 0.06 0.59 10.85 83.39 0.91 1.49 16 12 C -0.26 -2.66 10.80 22.00 0.24 -2.43 16 13 C 0.06 0.93 12.02 85.26 1.02 1.95 16 14 N -0.35 -8.71 11.98 -56.97 -0.68 -9.39 16 15 C -0.15 -1.52 9.54 22.55 0.22 -1.30 16 16 C 0.14 1.44 11.17 84.76 0.95 2.38 16 17 N -0.47 -9.42 9.54 -185.13 -1.77 -11.18 16 18 C -0.11 -3.31 3.73 -10.37 -0.04 -3.35 16 19 C 0.13 4.65 8.08 83.17 0.67 5.33 16 20 N -0.66 -33.06 3.49 -738.03 -2.58 -35.64 16 21 C -0.28 -17.26 11.08 84.03 0.93 -16.33 16 22 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 23 C -0.09 -5.78 5.50 84.86 0.47 -5.31 16 24 N -0.98 -67.14 13.70 21.65 0.30 -66.85 16 25 Si 1.11 58.47 25.16 68.60 1.73 60.20 16 26 H -0.31 -16.36 7.11 99.48 0.71 -15.65 16 27 H -0.30 -15.47 6.51 99.48 0.65 -14.82 16 28 H -0.25 -11.25 6.20 99.48 0.62 -10.64 16 29 C 0.09 3.60 5.24 83.26 0.44 4.04 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.99 6.50 -2.39 -0.02 1.98 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.42 9.66 7.93 -92.71 -0.74 8.93 16 34 H 0.12 4.43 7.39 -2.91 -0.02 4.41 16 35 H 0.23 -0.06 7.16 -2.91 -0.02 -0.08 16 36 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 37 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.20 -0.12 6.90 -2.91 -0.02 -0.14 16 39 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.05 1.87 6.43 -2.39 -0.02 1.86 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.25 16.90 8.73 -92.71 -0.81 16.09 16 44 H 0.07 2.53 7.66 -2.39 -0.02 2.51 16 45 H 0.03 1.46 4.71 -2.39 -0.01 1.45 16 Total: -1.00 -97.03 374.34 2.09 -94.95 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.11 Total: 12.05 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 8.00 Total: 12.38 kcal Atomic # 7 Polarization: -145.80 SS G_CDS: -7.70 Total: -153.50 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.06 Total: -26.08 kcal Atomic # 14 Polarization: 58.47 SS G_CDS: 1.73 Total: 60.20 kcal Total: -97.03 2.09 -94.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970409586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.772 kcal (2) G-P(sol) polarization free energy of solvation -97.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds