Wall clock time and date at job start Wed Apr 1 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21515 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.48165 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.39237 * 119.68571 * 179.72680 * 7 5 4 9 9 C 1.38708 * 119.19282 * 179.75245 * 8 7 5 10 10 C 1.38409 * 118.55092 * 0.51895 * 9 8 7 11 11 C 1.39261 * 119.30422 * 359.74697 * 10 9 8 12 12 N 1.39813 * 119.62290 * 180.02562 * 11 10 9 13 13 C 1.35845 * 126.10643 * 179.69918 * 12 11 10 14 14 C 1.35277 * 107.61573 * 179.83964 * 13 12 11 15 15 C 1.39959 * 107.96512 * 0.41761 * 14 13 12 16 16 N 1.30814 * 108.37379 * 359.74097 * 15 14 13 17 17 N 1.31984 * 120.76114 * 359.97438 * 11 10 9 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.08007 * 120.40617 * 0.03141 * 8 7 5 35 35 H 1.07999 * 120.72531 * 180.27283 * 9 8 7 36 36 H 1.08008 * 120.35011 * 179.72956 * 10 9 8 37 37 H 1.07997 * 126.19376 * 359.97438 * 13 12 11 38 38 H 1.08002 * 126.01899 * 180.15843 * 14 13 12 39 39 H 1.08004 * 125.81490 * 179.71747 * 15 14 13 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1609 -2.4116 7 6 2.6416 -0.7166 -3.5666 8 6 2.7666 -0.0171 -4.7641 9 6 3.2355 -0.6797 -5.8889 10 6 3.5533 -2.0225 -5.7812 11 6 3.3993 -2.6631 -4.5543 12 7 3.7188 -4.0192 -4.4379 13 6 3.6249 -4.7698 -3.3095 14 6 4.0230 -6.0252 -3.6185 15 6 4.3801 -6.0440 -4.9717 16 7 4.1987 -4.8452 -5.4627 17 7 2.9560 -2.0046 -3.4998 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.5060 1.0298 -4.8154 35 1 3.3463 -0.1601 -6.8292 36 1 3.9167 -2.5678 -6.6397 37 1 3.2907 -4.4269 -2.3414 38 1 4.0627 -6.8641 -2.9395 39 1 4.7439 -6.9021 -5.5174 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970412018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:10 Heat of formation + Delta-G solvation = 167.330098 kcal Electronic energy + Delta-G solvation = -29283.887959 eV Core-core repulsion = 25306.524343 eV Total energy + Delta-G solvation = -3977.363616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90804 -40.73577 -39.70671 -38.53959 -34.79144 -33.99424 -33.16511 -32.36168 -30.69579 -30.19936 -29.51720 -28.01140 -25.45010 -25.34258 -24.47408 -23.78994 -21.99804 -21.28557 -21.01591 -20.31214 -19.26346 -18.50837 -17.74824 -17.41870 -16.45531 -16.29697 -15.99729 -15.67742 -15.36895 -15.26862 -14.95078 -14.87334 -14.18037 -13.92020 -13.75878 -13.68281 -13.55971 -13.18557 -13.08528 -12.68629 -12.49417 -11.95646 -11.71594 -11.39030 -11.23676 -11.21539 -10.86269 -10.82352 -10.68480 -10.58228 -10.37895 -10.31150 -10.09415 -9.87748 -9.53238 -9.23150 -9.10112 -8.90775 -8.86680 -8.65800 -7.10725 -6.30089 -3.22917 0.14596 0.46708 1.65872 1.70253 2.43049 2.63974 3.01664 3.36265 3.40593 3.53771 3.61626 3.73338 4.02619 4.47934 4.52294 4.56290 4.57758 4.64982 4.75494 4.85588 4.98376 5.03932 5.12320 5.15514 5.33280 5.44099 5.51314 5.61291 5.65780 5.67202 5.82463 5.91849 5.99673 6.16374 6.17324 6.21063 6.27129 6.35908 6.41153 6.52449 6.67210 6.73984 6.86221 6.91704 7.11909 7.24300 7.36661 7.60616 8.15935 8.24168 8.97710 9.50269 10.37289 11.20815 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003344 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.584757 B = 8370.414063 C = 9910.229705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.169 3.831 3 H 0.087 0.913 4 N -0.698 5.698 5 C 0.570 3.430 6 O -0.529 6.529 7 C 0.121 3.879 8 C -0.125 4.125 9 C -0.056 4.056 10 C -0.146 4.146 11 C 0.372 3.628 12 N -0.328 5.328 13 C 0.082 3.918 14 C -0.264 4.264 15 C 0.066 3.934 16 N -0.288 5.288 17 N -0.484 5.484 18 C -0.146 4.146 19 C 0.132 3.868 20 N -0.623 5.623 21 C -0.299 4.299 22 H 0.083 0.917 23 C -0.023 4.023 24 N -0.935 5.935 25 Si 1.067 2.933 26 H -0.297 1.297 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.097 3.903 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.407 0.593 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.185 0.815 38 H 0.158 0.842 39 H 0.194 0.806 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.935 -3.656 -18.982 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.066 3.934 3 H 0.105 0.895 4 N -0.347 5.347 5 C 0.354 3.646 6 O -0.405 6.405 7 C -0.019 4.019 8 C -0.147 4.147 9 C -0.082 4.082 10 C -0.169 4.169 11 C 0.142 3.858 12 N -0.106 5.106 13 C -0.059 4.059 14 C -0.292 4.292 15 C -0.123 4.123 16 N -0.107 5.107 17 N -0.200 5.200 18 C -0.166 4.166 19 C 0.005 3.995 20 N -0.352 5.352 21 C -0.425 4.425 22 H 0.100 0.900 23 C -0.222 4.222 24 N -0.577 5.577 25 Si 0.901 3.099 26 H -0.224 1.224 27 H -0.220 1.220 28 H -0.215 1.215 29 C -0.028 4.028 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.242 0.758 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.210 0.790 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.885 -3.869 -19.584 26.146 hybrid contribution 0.707 0.638 0.696 1.179 sum 17.592 -3.231 -18.889 26.014 Atomic orbital electron populations 1.22234 0.92964 1.03461 1.02237 1.20725 0.95664 0.95793 0.81177 0.89508 1.46046 1.64733 1.14616 1.09337 1.17692 0.78406 0.86094 0.82457 1.90803 1.50549 1.14842 1.84331 1.21008 0.97904 0.87906 0.95061 1.22189 0.98107 1.02672 0.91720 1.21571 0.94291 0.93128 0.99255 1.21814 1.01949 0.95577 0.97519 1.17549 0.95914 0.81939 0.90385 1.45778 1.50592 1.05953 1.08311 1.23019 0.98807 0.91308 0.92780 1.21715 1.12473 0.97979 0.97063 1.24177 0.97908 0.95407 0.94764 1.77428 1.20277 1.02154 1.10811 1.66662 1.13156 1.09374 1.30780 1.23247 0.98452 0.99680 0.95226 1.22283 0.88377 0.96198 0.92652 1.46063 1.05057 1.20587 1.63457 1.20075 0.83879 1.00522 1.38067 0.89977 1.25644 0.94870 1.00666 1.01050 1.70911 1.19216 1.31648 1.35963 0.83771 0.74435 0.76234 0.75502 1.22426 1.22002 1.21476 1.22868 0.92231 0.93135 0.94573 0.91976 0.88767 0.94421 0.75790 0.82510 0.82929 0.82965 0.79798 0.82408 0.78957 0.90320 0.93422 0.94146 0.92908 0.93777 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.06 37.16 0.30 -2.66 16 2 C 0.17 2.78 2.76 -67.93 -0.19 2.60 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.70 -10.20 5.07 -54.65 -0.28 -10.48 16 5 C 0.57 8.45 7.78 -12.18 -0.09 8.36 16 6 O -0.53 -9.11 15.98 5.35 0.09 -9.03 16 7 C 0.12 1.50 6.75 -83.02 -0.56 0.94 16 8 C -0.13 -1.25 9.63 -39.04 -0.38 -1.62 16 9 C -0.06 -0.43 10.16 -39.34 -0.40 -0.83 16 10 C -0.15 -1.35 9.70 -39.14 -0.38 -1.72 16 11 C 0.37 4.27 7.55 -154.53 -1.17 3.10 16 12 N -0.33 -3.72 3.81 -12.10 -0.05 -3.77 16 13 C 0.08 0.82 11.10 -16.83 -0.19 0.64 16 14 C -0.26 -2.19 10.80 -39.99 -0.43 -2.62 16 15 C 0.07 0.54 12.02 -17.34 -0.21 0.33 16 16 N -0.29 -3.08 11.83 30.64 0.36 -2.71 16 17 N -0.48 -5.90 9.03 -8.85 -0.08 -5.98 16 18 C -0.15 -2.36 4.25 -89.97 -0.38 -2.74 16 19 C 0.13 2.44 7.86 -8.51 -0.07 2.37 16 20 N -0.62 -14.33 2.09 -184.59 -0.39 -14.71 16 21 C -0.30 -8.24 9.92 -15.06 -0.15 -8.39 16 22 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 23 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 24 N -0.94 -29.19 13.71 55.49 0.76 -28.43 16 25 Si 1.07 26.31 24.89 -169.99 -4.23 22.07 16 26 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 27 H -0.29 -6.75 5.95 56.52 0.34 -6.41 16 28 H -0.29 -6.59 6.22 56.52 0.35 -6.24 16 29 C 0.10 1.92 4.68 -8.36 -0.04 1.88 16 30 H 0.06 1.34 5.50 -51.93 -0.29 1.05 16 31 H 0.09 2.06 5.93 -51.93 -0.31 1.76 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.41 5.40 7.93 -40.82 -0.32 5.08 16 34 H 0.16 1.43 7.63 -52.48 -0.40 1.02 16 35 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.15 1.22 7.68 -52.48 -0.40 0.81 16 37 H 0.18 1.61 8.05 -52.49 -0.42 1.19 16 38 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.19 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 42 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 44 H 0.04 0.86 7.61 -51.93 -0.40 0.46 16 45 H 0.06 1.13 3.47 -51.93 -0.18 0.95 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -34.14 369.05 -8.43 -42.58 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.76 Total: 6.05 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.43 Total: -1.15 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.33 Total: -66.08 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.23 Total: 22.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.14 -8.43 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.908 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds