Wall clock time and date at job start Wed Apr 1 2020 00:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46778 * 2 1 4 4 N 1.46494 * 109.47388 * 239.99868 * 2 1 3 5 5 C 1.34778 * 119.99891 * 84.99712 * 4 2 1 6 6 O 1.21515 * 120.00247 * 0.02562 * 5 4 2 7 7 C 1.48165 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.39237 * 119.68571 * 179.72680 * 7 5 4 9 9 C 1.38708 * 119.19282 * 179.75245 * 8 7 5 10 10 C 1.38409 * 118.55092 * 0.51895 * 9 8 7 11 11 C 1.39261 * 119.30422 * 359.74697 * 10 9 8 12 12 N 1.39813 * 119.62290 * 180.02562 * 11 10 9 13 13 C 1.35845 * 126.10643 * 179.69918 * 12 11 10 14 14 C 1.35277 * 107.61573 * 179.83964 * 13 12 11 15 15 C 1.39959 * 107.96512 * 0.41761 * 14 13 12 16 16 N 1.30814 * 108.37379 * 359.74097 * 15 14 13 17 17 N 1.31984 * 120.76114 * 359.97438 * 11 10 9 18 18 C 1.52997 * 109.46716 * 119.99680 * 2 1 3 19 19 C 1.53493 * 114.21093 * 300.00230 * 18 2 1 20 20 N 1.47063 * 87.98878 * 87.52231 * 19 18 2 21 21 C 1.36937 * 136.06294 * 207.09193 * 20 19 18 22 22 H 1.08002 * 119.99154 * 8.42658 * 21 20 19 23 23 C 1.38809 * 120.00444 * 188.43562 * 21 20 19 24 24 N 1.31615 * 120.00184 * 174.84707 * 23 21 20 25 25 Si 1.86804 * 119.99817 * 354.84535 * 23 21 20 26 26 H 1.48500 * 109.46921 * 174.85685 * 25 23 21 27 27 H 1.48499 * 109.46931 * 294.85807 * 25 23 21 28 28 H 1.48497 * 109.47301 * 54.85270 * 25 23 21 29 29 C 1.47077 * 87.88326 * 27.34112 * 20 19 18 30 30 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47114 * 300.00219 * 1 2 3 32 32 H 1.08997 * 109.46839 * 60.00326 * 1 2 3 33 33 H 0.96998 * 120.00027 * 265.00288 * 4 2 1 34 34 H 1.08007 * 120.40617 * 0.03141 * 8 7 5 35 35 H 1.07999 * 120.72531 * 180.27283 * 9 8 7 36 36 H 1.08008 * 120.35011 * 179.72956 * 10 9 8 37 37 H 1.07997 * 126.19376 * 359.97438 * 13 12 11 38 38 H 1.08002 * 126.01899 * 180.15843 * 14 13 12 39 39 H 1.08004 * 125.81490 * 179.71747 * 15 14 13 40 40 H 1.09006 * 113.40935 * 166.79909 * 18 2 1 41 41 H 1.08997 * 113.46804 * 332.73869 * 19 18 2 42 42 H 1.09009 * 113.52158 * 202.31079 * 19 18 2 43 43 H 0.97003 * 120.00032 * 357.02883 * 24 23 21 44 44 H 1.09000 * 113.46243 * 87.44347 * 29 20 19 45 45 H 1.08997 * 113.46338 * 217.88020 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1609 -2.4116 7 6 2.6416 -0.7166 -3.5666 8 6 2.7666 -0.0171 -4.7641 9 6 3.2355 -0.6797 -5.8889 10 6 3.5533 -2.0225 -5.7812 11 6 3.3993 -2.6631 -4.5543 12 7 3.7188 -4.0192 -4.4379 13 6 3.6249 -4.7698 -3.3095 14 6 4.0230 -6.0252 -3.6185 15 6 4.3801 -6.0440 -4.9717 16 7 4.1987 -4.8452 -5.4627 17 7 2.9560 -2.0046 -3.4998 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0846 2.5714 20 7 0.3743 -0.9090 2.4946 21 6 -0.9131 -0.8126 2.9511 22 1 -1.2576 0.1048 3.4051 23 6 -1.7752 -1.8938 2.8304 24 7 -2.9793 -1.8377 3.3588 25 14 -1.2263 -3.4286 1.9178 26 1 -2.2726 -4.4757 2.0364 27 1 -1.0124 -3.1026 0.4850 28 1 0.0424 -3.9275 2.5067 29 6 1.1519 -1.8859 1.7172 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 2.5060 1.0298 -4.8154 35 1 3.3463 -0.1601 -6.8292 36 1 3.9167 -2.5678 -6.6397 37 1 3.2907 -4.4269 -2.3414 38 1 4.0627 -6.8641 -2.9395 39 1 4.7439 -6.9021 -5.5174 40 1 3.1025 -0.9609 1.2076 41 1 1.3943 0.9849 2.4939 42 1 2.2318 -0.3354 3.4159 43 1 -3.2490 -1.0583 3.8695 44 1 1.6788 -2.6123 2.3359 45 1 0.5833 -2.3509 0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970412018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:09 Heat of formation + Delta-G solvation = 144.628751 kcal Electronic energy + Delta-G solvation = -29284.872363 eV Core-core repulsion = 25306.524343 eV Total energy + Delta-G solvation = -3978.348020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60667 -41.71469 -40.95923 -39.77836 -36.13176 -34.72578 -34.53543 -33.88879 -31.46903 -31.35972 -30.45151 -29.82394 -27.01672 -26.42014 -25.36551 -25.09801 -23.22657 -22.24079 -21.98713 -21.34618 -20.63572 -19.63926 -19.21777 -18.68674 -17.48946 -17.17734 -16.98302 -16.80060 -16.65327 -16.62185 -16.03359 -15.79371 -15.67897 -15.18434 -15.08907 -14.69099 -14.53737 -14.27709 -14.00722 -13.67925 -13.56432 -13.36952 -13.30245 -13.06501 -12.96834 -12.52277 -12.20540 -12.05737 -11.90010 -11.76202 -11.65447 -11.56832 -11.20550 -11.11587 -11.01501 -10.84768 -10.80262 -10.26992 -10.15790 -9.37961 -9.08188 -8.56187 -5.39586 -0.63749 -0.26540 0.96239 1.00879 1.36638 1.47334 1.64247 1.65619 1.83698 1.91876 2.56511 2.67763 2.88107 3.06052 3.27696 3.35388 3.49990 3.71101 3.77872 3.83559 3.87186 4.07812 4.16973 4.21863 4.31699 4.41355 4.47859 4.52316 4.66361 4.70316 4.72221 4.79136 4.86287 4.88132 4.94358 4.97949 5.01876 5.06331 5.24907 5.27225 5.31082 5.44106 5.56722 5.59428 5.97289 6.01323 6.11141 6.44195 6.70819 6.76255 7.03201 7.39433 8.34888 8.97114 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.003344 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.584757 B = 8370.414063 C = 9910.229705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.178 3.822 3 H 0.090 0.910 4 N -0.693 5.693 5 C 0.571 3.429 6 O -0.559 6.559 7 C 0.098 3.902 8 C -0.125 4.125 9 C -0.038 4.038 10 C -0.143 4.143 11 C 0.354 3.646 12 N -0.343 5.343 13 C 0.057 3.943 14 C -0.259 4.259 15 C 0.070 3.930 16 N -0.314 5.314 17 N -0.495 5.495 18 C -0.115 4.115 19 C 0.128 3.872 20 N -0.653 5.653 21 C -0.271 4.271 22 H 0.048 0.952 23 C -0.086 4.086 24 N -0.979 5.979 25 Si 1.104 2.896 26 H -0.313 1.313 27 H -0.274 1.274 28 H -0.255 1.255 29 C 0.090 3.910 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.415 0.585 34 H 0.164 0.836 35 H 0.195 0.805 36 H 0.165 0.835 37 H 0.189 0.811 38 H 0.182 0.818 39 H 0.229 0.771 40 H 0.124 0.876 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.245 0.755 44 H 0.062 0.938 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.494 -5.043 -21.416 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.074 3.926 3 H 0.108 0.892 4 N -0.343 5.343 5 C 0.356 3.644 6 O -0.437 6.437 7 C -0.041 4.041 8 C -0.146 4.146 9 C -0.063 4.063 10 C -0.165 4.165 11 C 0.124 3.876 12 N -0.121 5.121 13 C -0.083 4.083 14 C -0.287 4.287 15 C -0.119 4.119 16 N -0.132 5.132 17 N -0.212 5.212 18 C -0.134 4.134 19 C 0.003 3.997 20 N -0.382 5.382 21 C -0.399 4.399 22 H 0.066 0.934 23 C -0.278 4.278 24 N -0.625 5.625 25 Si 0.931 3.069 26 H -0.242 1.242 27 H -0.201 1.201 28 H -0.180 1.180 29 C -0.034 4.034 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.252 0.748 34 H 0.181 0.819 35 H 0.212 0.788 36 H 0.183 0.817 37 H 0.206 0.794 38 H 0.199 0.801 39 H 0.245 0.755 40 H 0.142 0.858 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.526 -5.245 -22.025 30.560 hybrid contribution -0.318 1.131 1.389 1.819 sum 20.208 -4.114 -20.637 29.174 Atomic orbital electron populations 1.22051 0.95731 1.01416 1.00542 1.20485 0.93211 0.96481 0.82424 0.89196 1.45891 1.64639 1.14944 1.08846 1.18043 0.77522 0.85808 0.82996 1.90781 1.51850 1.16161 1.84901 1.20715 1.00088 0.88455 0.94822 1.22376 0.97692 1.03007 0.91558 1.21985 0.91991 0.92406 0.99958 1.22087 1.01121 0.96195 0.97100 1.17869 0.96378 0.82396 0.90994 1.45924 1.51372 1.06041 1.08786 1.23349 0.99786 0.92162 0.93020 1.22081 1.11090 0.97964 0.97531 1.24850 0.96462 0.95576 0.94973 1.77391 1.21376 1.03108 1.11373 1.66518 1.13793 1.09266 1.31578 1.23034 1.00157 0.96839 0.93417 1.22533 0.86567 0.95914 0.94735 1.46114 1.04899 1.23095 1.64078 1.19859 0.86363 0.98626 1.35016 0.93439 1.26871 0.94646 1.03878 1.02369 1.71017 1.21130 1.31589 1.38769 0.83361 0.74954 0.72826 0.75757 1.24225 1.20082 1.17985 1.23091 0.92187 0.93989 0.94139 0.94029 0.91668 0.94898 0.74809 0.81866 0.78806 0.81716 0.79384 0.80096 0.75488 0.85831 0.93456 0.91873 0.94641 0.91999 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.06 71.98 0.58 -4.91 16 2 C 0.18 5.56 2.76 44.99 0.12 5.68 16 3 H 0.09 2.84 7.58 -2.39 -0.02 2.82 16 4 N -0.69 -19.09 5.07 -445.11 -2.26 -21.35 16 5 C 0.57 16.33 7.78 86.88 0.68 17.01 16 6 O -0.56 -18.90 15.98 -3.76 -0.06 -18.96 16 7 C 0.10 2.30 6.75 41.88 0.28 2.59 16 8 C -0.12 -2.22 9.63 22.62 0.22 -2.01 16 9 C -0.04 -0.46 10.16 22.42 0.23 -0.23 16 10 C -0.14 -2.28 9.70 22.56 0.22 -2.06 16 11 C 0.35 7.56 7.55 132.94 1.00 8.57 16 12 N -0.34 -7.24 3.81 -192.19 -0.73 -7.97 16 13 C 0.06 1.06 11.10 83.39 0.93 1.98 16 14 C -0.26 -3.63 10.80 22.00 0.24 -3.39 16 15 C 0.07 0.95 12.02 85.26 1.02 1.97 16 16 N -0.31 -6.07 11.83 -56.97 -0.67 -6.74 16 17 N -0.50 -11.43 9.03 -181.91 -1.64 -13.07 16 18 C -0.12 -3.34 4.25 -10.37 -0.04 -3.38 16 19 C 0.13 4.45 7.86 83.18 0.65 5.10 16 20 N -0.65 -29.51 2.09 -737.90 -1.54 -31.05 16 21 C -0.27 -15.32 9.92 84.03 0.83 -14.48 16 22 H 0.05 2.95 8.05 -2.91 -0.02 2.92 16 23 C -0.09 -5.14 5.50 84.86 0.47 -4.67 16 24 N -0.98 -63.89 13.71 21.65 0.30 -63.60 16 25 Si 1.10 53.29 24.89 68.60 1.71 54.99 16 26 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 27 H -0.27 -12.23 5.95 99.48 0.59 -11.64 16 28 H -0.25 -10.81 6.22 99.48 0.62 -10.19 16 29 C 0.09 3.31 4.68 83.27 0.39 3.70 16 30 H 0.04 1.79 5.50 -2.39 -0.01 1.77 16 31 H 0.06 2.93 5.93 -2.39 -0.01 2.92 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 10.13 7.93 -92.71 -0.74 9.40 16 34 H 0.16 2.66 7.63 -2.91 -0.02 2.64 16 35 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.17 2.19 7.68 -2.91 -0.02 2.16 16 37 H 0.19 3.06 8.05 -2.91 -0.02 3.04 16 38 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.23 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.05 1.64 8.12 -2.39 -0.02 1.63 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.24 16.07 8.73 -92.71 -0.81 15.26 16 44 H 0.06 2.12 7.61 -2.39 -0.02 2.10 16 45 H 0.05 1.85 3.47 -2.39 -0.01 1.84 16 Total: -1.00 -78.62 369.05 2.98 -75.64 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.06 Total: 20.65 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 7.82 Total: 11.46 kcal Atomic # 7 Polarization: -137.24 SS G_CDS: -6.55 Total: -143.78 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.06 Total: -18.96 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.71 Total: 54.99 kcal Total: -78.62 2.98 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.271 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds