Wall clock time and date at job start Wed Apr 1 2020 00:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46521 * 2 1 4 4 N 1.46503 * 109.46795 * 119.99249 * 2 1 3 5 5 C 1.34778 * 120.00080 * 275.00085 * 4 2 1 6 6 O 1.21622 * 120.00051 * 5.35446 * 5 4 2 7 7 C 1.47149 * 119.99913 * 185.35168 * 5 4 2 8 8 C 1.37074 * 127.21363 * 187.61065 * 7 5 4 9 9 N 1.33308 * 106.37688 * 179.73963 * 8 7 5 10 10 N 1.28504 * 109.49368 * 0.25757 * 9 8 7 11 11 N 1.28706 * 110.67484 * 0.02562 * 10 9 8 12 12 C 1.40083 * 126.06076 * 180.02562 * 11 10 9 13 13 C 1.38867 * 120.07210 * 52.08296 * 12 11 10 14 14 C 1.38108 * 119.93026 * 179.72080 * 13 12 11 15 15 C 1.38284 * 120.07115 * 0.55616 * 14 13 12 16 16 C 1.38288 * 120.13593 * 359.72202 * 15 14 13 17 17 C 1.38106 * 120.07168 * 359.97438 * 16 15 14 18 18 C 1.52987 * 109.47163 * 239.99449 * 2 1 3 19 19 C 1.53945 * 113.74166 * 158.74342 * 18 2 1 20 20 N 1.47818 * 86.03792 * 222.08324 * 19 18 2 21 21 C 1.36934 * 134.45565 * 204.64038 * 20 19 18 22 22 H 1.08000 * 119.99585 * 179.86560 * 21 20 19 23 23 C 1.38808 * 120.00377 * 359.86803 * 21 20 19 24 24 N 1.31624 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00285 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46791 * 90.00104 * 25 23 21 27 27 H 1.48497 * 109.47292 * 209.99901 * 25 23 21 28 28 H 1.48495 * 109.47330 * 330.00296 * 25 23 21 29 29 C 1.47585 * 91.04759 * 24.54570 * 20 19 18 30 30 H 1.09006 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47223 * 300.00593 * 1 2 3 32 32 H 1.09000 * 109.47052 * 60.00410 * 1 2 3 33 33 H 0.96994 * 119.99760 * 95.00270 * 4 2 1 34 34 H 1.08003 * 126.81204 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.03075 * 0.02562 * 13 12 11 36 36 H 1.08002 * 119.96433 * 180.30298 * 14 13 12 37 37 H 1.08000 * 119.93014 * 179.74044 * 15 14 13 38 38 H 1.08000 * 119.96092 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.03627 * 180.02562 * 17 16 15 40 40 H 1.09002 * 112.94847 * 290.33370 * 18 2 1 41 41 H 1.09002 * 113.76822 * 336.34188 * 19 18 2 42 42 H 1.08999 * 113.77568 * 107.74649 * 19 18 2 43 43 H 0.96999 * 120.00407 * 179.97438 * 24 23 21 44 44 H 1.09002 * 113.76649 * 221.15013 * 29 20 19 45 45 H 1.09001 * 113.86895 * 89.77035 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.7670 1.1345 2.4377 7 6 2.7473 -0.6782 3.5273 8 6 2.8191 -0.1925 4.8071 9 7 3.4379 -1.1265 5.5294 10 7 3.7408 -2.1216 4.7748 11 7 3.3559 -1.9082 3.5653 12 6 3.5219 -2.7798 2.4812 13 6 3.1052 -4.1007 2.5802 14 6 3.2651 -4.9560 1.5077 15 6 3.8499 -4.5012 0.3400 16 6 4.2712 -3.1879 0.2403 17 6 4.1085 -2.3260 1.3071 18 6 2.0401 -0.7213 -1.2491 19 6 3.4849 -0.3522 -1.6315 20 7 2.9980 -0.3179 -3.0268 21 6 3.5877 -0.4760 -4.2524 22 1 2.9929 -0.4041 -5.1511 23 6 4.9498 -0.7286 -4.3400 24 7 5.6746 -0.8158 -3.2448 25 14 5.7541 -0.9450 -6.0120 26 1 6.2188 0.3739 -6.5120 27 1 6.9138 -1.8641 -5.8882 28 1 4.7690 -1.5166 -6.9649 29 6 1.6214 -0.0474 -2.5683 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6316 1.1528 34 1 2.4449 0.7569 5.1609 35 1 2.6521 -4.4575 3.4934 36 1 2.9367 -5.9821 1.5824 37 1 3.9776 -5.1731 -0.4959 38 1 4.7272 -2.8356 -0.6731 39 1 4.4373 -1.3003 1.2284 40 1 1.8529 -1.7949 -1.2261 41 1 3.8048 0.6190 -1.2539 42 1 4.2072 -1.1448 -1.4364 43 1 6.6264 -0.9927 -3.3059 44 1 0.8587 -0.5972 -3.1199 45 1 1.3909 1.0130 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970501596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:37 Heat of formation + Delta-G solvation = 162.942336 kcal Electronic energy + Delta-G solvation = -30535.528507 eV Core-core repulsion = 26557.974623 eV Total energy + Delta-G solvation = -3977.553883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68082 -40.09470 -39.37915 -38.14577 -35.27489 -34.65144 -32.45696 -31.85934 -31.19321 -30.20519 -30.20186 -27.62378 -25.31978 -24.80013 -24.16033 -23.61995 -23.02949 -21.93350 -21.31746 -20.51879 -19.48642 -18.61384 -17.04152 -16.89101 -16.82511 -16.55525 -16.27634 -15.15857 -15.04113 -14.91764 -14.82306 -14.51104 -14.23710 -13.97005 -13.83577 -13.65997 -13.16003 -13.05085 -12.54577 -12.29169 -12.21139 -11.99690 -11.78278 -11.66261 -11.45335 -11.43223 -11.34356 -11.00679 -10.81954 -10.77797 -10.49633 -10.27629 -9.93367 -9.89213 -9.67247 -9.53014 -9.32198 -9.14325 -8.93413 -8.89080 -6.97695 -5.87622 -3.18905 0.33043 0.99262 1.07587 1.86658 2.15758 2.97612 3.00449 3.31260 3.32120 3.38034 3.39109 4.09079 4.36229 4.45077 4.51760 4.63413 4.82261 4.88159 4.95121 5.00393 5.06110 5.14032 5.15044 5.19474 5.36169 5.43299 5.54311 5.66499 5.70295 5.81841 5.82686 5.90268 5.94094 6.01654 6.11656 6.23835 6.24138 6.31179 6.32423 6.43863 6.52133 6.60997 6.65500 7.09945 7.22595 7.36508 7.43225 7.87536 7.99410 8.13270 8.95060 9.61120 10.49427 11.29723 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003875 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.250532 B = 7223.741351 C = 8291.443093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.091 0.909 4 N -0.715 5.715 5 C 0.593 3.407 6 O -0.518 6.518 7 C -0.066 4.066 8 C 0.029 3.971 9 N -0.272 5.272 10 N -0.050 5.050 11 N -0.223 5.223 12 C 0.082 3.918 13 C -0.091 4.091 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.088 4.088 17 C -0.099 4.099 18 C -0.148 4.148 19 C 0.168 3.832 20 N -0.610 5.610 21 C -0.221 4.221 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.923 5.923 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.399 0.601 34 H 0.206 0.794 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -7.032 11.010 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.109 0.891 4 N -0.370 5.370 5 C 0.376 3.624 6 O -0.392 6.392 7 C -0.198 4.198 8 C -0.130 4.130 9 N -0.135 5.135 10 N -0.029 5.029 11 N -0.016 5.016 12 C -0.007 4.007 13 C -0.111 4.111 14 C -0.127 4.127 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.119 4.119 18 C -0.168 4.168 19 C 0.042 3.958 20 N -0.336 5.336 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.571 5.571 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.222 0.778 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.830 -7.204 11.778 15.403 hybrid contribution 0.215 0.332 -1.615 1.663 sum -6.615 -6.872 10.163 13.937 Atomic orbital electron populations 1.22143 0.95307 1.01883 1.02469 1.21226 0.93943 0.97559 0.82848 0.89072 1.46661 1.66350 1.14498 1.09490 1.16718 0.78738 0.85714 0.81263 1.90844 1.49228 1.16109 1.83059 1.22610 1.08737 0.89084 0.99320 1.23859 0.99804 1.00943 0.88376 1.74967 1.14378 0.98858 1.25324 1.78357 1.16994 1.20413 0.87156 1.44918 1.36171 1.12536 1.07984 1.17639 1.06952 0.90241 0.85892 1.21045 0.99092 0.90879 1.00088 1.21147 0.99159 0.99954 0.92452 1.21575 0.95439 0.96086 0.97812 1.21582 0.97365 0.92714 0.99005 1.21315 0.97086 1.01908 0.91618 1.23843 1.01125 0.99658 0.92218 1.22399 0.91246 0.98554 0.83569 1.45976 1.03179 1.82548 1.01893 1.19038 0.91482 1.41387 0.82955 0.90271 1.24719 0.95929 1.02332 0.97215 1.69781 1.06094 1.55462 1.25737 0.86154 0.79002 0.77609 0.83203 1.21642 1.21626 1.20652 1.22490 0.89762 0.96721 0.90648 0.92761 0.92425 0.91106 0.76031 0.77752 0.84731 0.84447 0.84416 0.82322 0.84188 0.89472 0.95752 0.90620 0.93664 0.93619 0.94620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.31 37.16 0.35 -1.66 16 2 C 0.15 2.14 2.34 -67.93 -0.16 1.98 16 3 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 4 N -0.71 -9.74 3.96 -54.97 -0.22 -9.96 16 5 C 0.59 8.77 7.56 -12.64 -0.10 8.67 16 6 O -0.52 -8.83 16.59 5.26 0.09 -8.74 16 7 C -0.07 -0.92 6.83 -82.23 -0.56 -1.48 16 8 C 0.03 0.38 11.88 -17.33 -0.21 0.18 16 9 N -0.27 -3.94 12.34 30.49 0.38 -3.56 16 10 N -0.05 -0.73 13.02 60.35 0.79 0.06 16 11 N -0.22 -3.00 3.44 -7.21 -0.02 -3.03 16 12 C 0.08 0.99 4.86 -83.62 -0.41 0.58 16 13 C -0.09 -0.90 9.90 -39.40 -0.39 -1.29 16 14 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 15 C -0.09 -0.87 10.04 -39.55 -0.40 -1.27 16 16 C -0.09 -1.06 9.64 -39.61 -0.38 -1.44 16 17 C -0.10 -1.24 6.65 -39.40 -0.26 -1.50 16 18 C -0.15 -2.40 3.47 -89.70 -0.31 -2.71 16 19 C 0.17 3.47 7.08 -2.84 -0.02 3.45 16 20 N -0.61 -14.33 3.70 -177.67 -0.66 -14.99 16 21 C -0.22 -5.81 10.70 -15.06 -0.16 -5.97 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.92 -25.09 11.39 55.49 0.63 -24.46 16 25 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 C 0.13 2.40 7.64 -2.97 -0.02 2.38 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 33 H 0.40 5.06 4.22 -40.82 -0.17 4.88 16 34 H 0.21 2.11 8.06 -52.48 -0.42 1.69 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.16 2.27 6.49 -52.49 -0.34 1.93 16 39 H 0.14 1.94 7.67 -52.49 -0.40 1.54 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.02 0.55 7.99 -51.93 -0.41 0.14 16 42 H 0.08 1.63 5.11 -51.93 -0.27 1.36 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -30.69 374.24 -7.65 -38.34 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.72 Total: 6.34 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.52 Total: -1.62 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.89 Total: -55.94 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.69 -7.65 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970501596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.282 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds