Wall clock time and date at job start Wed Apr 1 2020 00:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46521 * 2 1 4 4 N 1.46503 * 109.46795 * 119.99249 * 2 1 3 5 5 C 1.34778 * 120.00080 * 275.00085 * 4 2 1 6 6 O 1.21622 * 120.00051 * 5.35446 * 5 4 2 7 7 C 1.47149 * 119.99913 * 185.35168 * 5 4 2 8 8 C 1.37074 * 127.21363 * 187.61065 * 7 5 4 9 9 N 1.33308 * 106.37688 * 179.73963 * 8 7 5 10 10 N 1.28504 * 109.49368 * 0.25757 * 9 8 7 11 11 N 1.28706 * 110.67484 * 0.02562 * 10 9 8 12 12 C 1.40083 * 126.06076 * 180.02562 * 11 10 9 13 13 C 1.38867 * 120.07210 * 52.08296 * 12 11 10 14 14 C 1.38108 * 119.93026 * 179.72080 * 13 12 11 15 15 C 1.38284 * 120.07115 * 0.55616 * 14 13 12 16 16 C 1.38288 * 120.13593 * 359.72202 * 15 14 13 17 17 C 1.38106 * 120.07168 * 359.97438 * 16 15 14 18 18 C 1.52987 * 109.47163 * 239.99449 * 2 1 3 19 19 C 1.53945 * 113.74166 * 158.74342 * 18 2 1 20 20 N 1.47818 * 86.03792 * 222.08324 * 19 18 2 21 21 C 1.36934 * 134.45565 * 204.64038 * 20 19 18 22 22 H 1.08000 * 119.99585 * 179.86560 * 21 20 19 23 23 C 1.38808 * 120.00377 * 359.86803 * 21 20 19 24 24 N 1.31624 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00285 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46791 * 90.00104 * 25 23 21 27 27 H 1.48497 * 109.47292 * 209.99901 * 25 23 21 28 28 H 1.48495 * 109.47330 * 330.00296 * 25 23 21 29 29 C 1.47585 * 91.04759 * 24.54570 * 20 19 18 30 30 H 1.09006 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47223 * 300.00593 * 1 2 3 32 32 H 1.09000 * 109.47052 * 60.00410 * 1 2 3 33 33 H 0.96994 * 119.99760 * 95.00270 * 4 2 1 34 34 H 1.08003 * 126.81204 * 359.97438 * 8 7 5 35 35 H 1.08002 * 120.03075 * 0.02562 * 13 12 11 36 36 H 1.08002 * 119.96433 * 180.30298 * 14 13 12 37 37 H 1.08000 * 119.93014 * 179.74044 * 15 14 13 38 38 H 1.08000 * 119.96092 * 180.02562 * 16 15 14 39 39 H 1.08001 * 120.03627 * 180.02562 * 17 16 15 40 40 H 1.09002 * 112.94847 * 290.33370 * 18 2 1 41 41 H 1.09002 * 113.76822 * 336.34188 * 19 18 2 42 42 H 1.08999 * 113.77568 * 107.74649 * 19 18 2 43 43 H 0.96999 * 120.00407 * 179.97438 * 24 23 21 44 44 H 1.09002 * 113.76649 * 221.15013 * 29 20 19 45 45 H 1.09001 * 113.86895 * 89.77035 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0180 2.3572 6 8 1.7670 1.1345 2.4377 7 6 2.7473 -0.6782 3.5273 8 6 2.8191 -0.1925 4.8071 9 7 3.4379 -1.1265 5.5294 10 7 3.7408 -2.1216 4.7748 11 7 3.3559 -1.9082 3.5653 12 6 3.5219 -2.7798 2.4812 13 6 3.1052 -4.1007 2.5802 14 6 3.2651 -4.9560 1.5077 15 6 3.8499 -4.5012 0.3400 16 6 4.2712 -3.1879 0.2403 17 6 4.1085 -2.3260 1.3071 18 6 2.0401 -0.7213 -1.2491 19 6 3.4849 -0.3522 -1.6315 20 7 2.9980 -0.3179 -3.0268 21 6 3.5877 -0.4760 -4.2524 22 1 2.9929 -0.4041 -5.1511 23 6 4.9498 -0.7286 -4.3400 24 7 5.6746 -0.8158 -3.2448 25 14 5.7541 -0.9450 -6.0120 26 1 6.2188 0.3739 -6.5120 27 1 6.9138 -1.8641 -5.8882 28 1 4.7690 -1.5166 -6.9649 29 6 1.6214 -0.0474 -2.5683 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6316 1.1528 34 1 2.4449 0.7569 5.1609 35 1 2.6521 -4.4575 3.4934 36 1 2.9367 -5.9821 1.5824 37 1 3.9776 -5.1731 -0.4959 38 1 4.7272 -2.8356 -0.6731 39 1 4.4373 -1.3003 1.2284 40 1 1.8529 -1.7949 -1.2261 41 1 3.8048 0.6190 -1.2539 42 1 4.2072 -1.1448 -1.4364 43 1 6.6264 -0.9927 -3.3059 44 1 0.8587 -0.5972 -3.1199 45 1 1.3909 1.0130 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970501596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:36 Heat of formation + Delta-G solvation = 144.692600 kcal Electronic energy + Delta-G solvation = -30536.319875 eV Core-core repulsion = 26557.974623 eV Total energy + Delta-G solvation = -3978.345251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.74272 -41.25777 -40.35565 -39.64428 -36.46703 -35.79069 -34.17677 -33.09399 -32.09902 -31.44286 -31.12402 -29.32044 -26.75217 -26.02287 -25.54302 -24.80290 -24.03652 -22.96172 -22.66060 -21.65160 -20.83505 -19.77201 -18.71257 -18.10710 -17.89087 -17.57764 -17.40187 -16.87538 -16.14214 -16.06395 -15.94601 -15.73206 -15.58568 -15.17660 -14.99342 -14.68484 -14.59639 -14.17264 -13.92505 -13.44172 -13.38547 -13.25058 -13.07352 -12.92824 -12.84096 -12.70395 -12.55356 -12.51047 -12.43006 -12.01399 -11.77934 -11.73674 -11.59795 -11.34657 -11.14418 -10.82936 -10.78460 -10.29672 -10.09679 -9.95868 -8.87160 -7.87301 -5.19140 -0.65923 0.09323 0.15875 0.85964 1.07496 1.47645 1.49320 1.56909 1.82137 1.86435 2.46298 2.49396 3.03340 3.33171 3.38593 3.50557 3.63173 3.66859 3.75880 3.82077 3.91933 3.99847 4.11295 4.23574 4.25760 4.32104 4.40700 4.43620 4.56810 4.74990 4.77544 4.83309 4.86560 4.87184 4.98772 5.05263 5.09356 5.18709 5.27877 5.31568 5.33518 5.37941 5.43521 5.60631 5.65935 5.76729 5.97625 6.21678 6.83767 6.96419 7.04893 7.64699 8.60120 9.28985 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.003875 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.250532 B = 7223.741351 C = 8291.443093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.070 0.930 4 N -0.706 5.706 5 C 0.596 3.404 6 O -0.544 6.544 7 C -0.080 4.080 8 C 0.036 3.964 9 N -0.287 5.287 10 N -0.060 5.060 11 N -0.215 5.215 12 C 0.065 3.935 13 C -0.084 4.084 14 C -0.089 4.089 15 C -0.083 4.083 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.112 4.112 19 C 0.165 3.835 20 N -0.639 5.639 21 C -0.233 4.233 22 H 0.081 0.919 23 C -0.057 4.057 24 N -0.947 5.947 25 Si 0.969 3.031 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.269 1.269 29 C 0.129 3.871 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.406 0.594 34 H 0.229 0.771 35 H 0.151 0.849 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.102 0.898 41 H -0.003 1.003 42 H 0.064 0.936 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -9.117 11.110 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.088 0.912 4 N -0.362 5.362 5 C 0.380 3.620 6 O -0.420 6.420 7 C -0.211 4.211 8 C -0.124 4.124 9 N -0.150 5.150 10 N -0.040 5.040 11 N -0.009 5.009 12 C -0.024 4.024 13 C -0.104 4.104 14 C -0.107 4.107 15 C -0.101 4.101 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.132 4.132 19 C 0.040 3.960 20 N -0.365 5.365 21 C -0.361 4.361 22 H 0.099 0.901 23 C -0.251 4.251 24 N -0.596 5.596 25 Si 0.798 3.202 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.193 1.193 29 C 0.004 3.996 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.248 0.752 34 H 0.245 0.755 35 H 0.169 0.831 36 H 0.195 0.805 37 H 0.175 0.825 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.015 0.985 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.655 -9.310 11.880 17.399 hybrid contribution 0.787 0.966 -1.660 2.076 sum -7.867 -8.344 10.220 15.361 Atomic orbital electron populations 1.22081 0.92966 1.03133 1.02848 1.21061 0.95559 0.96102 0.82282 0.91214 1.46567 1.65905 1.14725 1.08973 1.16771 0.78328 0.85352 0.81596 1.90826 1.50528 1.17125 1.83569 1.22555 1.09609 0.89681 0.99271 1.24293 0.98778 1.01366 0.87928 1.74956 1.15033 0.99237 1.25724 1.78309 1.17305 1.20758 0.87585 1.45008 1.35356 1.12489 1.08018 1.17814 1.08238 0.91115 0.85254 1.21336 0.98120 0.89755 1.01174 1.21535 0.97094 1.01293 0.90804 1.21808 0.94333 0.94918 0.99068 1.21335 0.98605 0.94113 0.97828 1.21042 0.98363 1.00962 0.92430 1.23448 0.97163 1.00309 0.92281 1.22323 0.93883 0.96846 0.82951 1.46360 1.05562 1.82734 1.01892 1.19384 0.91916 1.40467 0.84339 0.90098 1.25429 0.96575 1.02972 1.00114 1.69948 1.05742 1.56637 1.27262 0.85219 0.78026 0.76941 0.79977 1.22245 1.21974 1.19329 1.22680 0.88000 0.97535 0.91389 0.91032 0.92715 0.90102 0.75236 0.75476 0.83144 0.80462 0.82486 0.85328 0.86684 0.88015 0.98507 0.91796 0.94363 0.91682 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.31 71.99 0.67 -2.82 16 2 C 0.15 4.37 2.34 44.99 0.11 4.48 16 3 H 0.07 2.32 7.50 -2.39 -0.02 2.30 16 4 N -0.71 -19.08 3.96 -446.08 -1.77 -20.84 16 5 C 0.60 17.66 7.56 86.58 0.65 18.31 16 6 O -0.54 -18.64 16.59 -4.10 -0.07 -18.71 16 7 C -0.08 -2.20 6.83 40.36 0.28 -1.93 16 8 C 0.04 0.92 11.88 84.20 1.00 1.92 16 9 N -0.29 -8.13 12.34 -57.46 -0.71 -8.84 16 10 N -0.06 -1.72 13.02 37.02 0.48 -1.24 16 11 N -0.21 -5.69 3.44 -176.71 -0.61 -6.30 16 12 C 0.06 1.51 4.86 38.12 0.19 1.69 16 13 C -0.08 -1.44 9.90 22.39 0.22 -1.21 16 14 C -0.09 -1.16 10.04 22.25 0.22 -0.94 16 15 C -0.08 -1.42 10.04 22.29 0.22 -1.19 16 16 C -0.10 -2.43 9.64 22.25 0.21 -2.21 16 17 C -0.11 -2.75 6.65 22.39 0.15 -2.60 16 18 C -0.11 -3.56 3.47 -10.14 -0.04 -3.60 16 19 C 0.17 7.09 7.08 86.44 0.61 7.71 16 20 N -0.64 -30.30 3.70 -716.03 -2.65 -32.95 16 21 C -0.23 -12.30 10.70 84.03 0.90 -11.40 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 24 N -0.95 -53.10 11.39 21.65 0.25 -52.85 16 25 Si 0.97 43.59 29.55 68.60 2.03 45.61 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 C 0.13 4.63 7.64 86.48 0.66 5.29 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 32 H 0.08 1.71 7.52 -2.39 -0.02 1.69 16 33 H 0.41 10.05 4.22 -92.71 -0.39 9.66 16 34 H 0.23 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.13 3.96 6.49 -2.91 -0.02 3.94 16 39 H 0.12 3.47 7.67 -2.91 -0.02 3.45 16 40 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.00 -0.14 7.99 -2.39 -0.02 -0.16 16 42 H 0.06 2.90 5.11 -2.39 -0.01 2.89 16 43 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -67.75 374.24 4.12 -63.63 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.64 Total: 23.61 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.53 Total: 8.88 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -5.01 Total: -123.02 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.07 Total: -18.71 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.75 4.12 -63.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970501596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.324 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds