Wall clock time and date at job start Wed Apr 1 2020 00:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47241 * 2 1 4 4 N 1.46502 * 109.46933 * 240.00243 * 2 1 3 5 5 C 1.34779 * 119.99966 * 84.99838 * 4 2 1 6 6 O 1.21625 * 119.99952 * 355.25053 * 5 4 2 7 7 C 1.47147 * 120.00166 * 175.24567 * 5 4 2 8 8 C 1.37073 * 127.21161 * 354.67776 * 7 5 4 9 9 N 1.33314 * 106.37623 * 179.84506 * 8 7 5 10 10 N 1.28495 * 109.49579 * 0.42634 * 9 8 7 11 11 N 1.28722 * 110.67129 * 359.72785 * 10 9 8 12 12 C 1.40080 * 126.05835 * 180.02562 * 11 10 9 13 13 C 1.38870 * 120.06896 * 135.30897 * 12 11 10 14 14 C 1.38112 * 119.92987 * 179.69468 * 13 12 11 15 15 C 1.38286 * 120.06768 * 0.58290 * 14 13 12 16 16 C 1.38286 * 120.14297 * 359.71768 * 15 14 13 17 17 C 1.38110 * 120.06599 * 359.97438 * 16 15 14 18 18 C 1.52992 * 109.47530 * 120.00309 * 2 1 3 19 19 C 1.53503 * 114.20744 * 300.00106 * 18 2 1 20 20 N 1.47068 * 87.98351 * 220.34555 * 19 18 2 21 21 C 1.36936 * 136.05109 * 207.08854 * 20 19 18 22 22 H 1.07998 * 120.00474 * 6.11971 * 21 20 19 23 23 C 1.38816 * 119.99474 * 186.12529 * 21 20 19 24 24 N 1.31623 * 119.99659 * 198.86758 * 23 21 20 25 25 Si 1.86798 * 120.00313 * 18.86124 * 23 21 20 26 26 H 1.48491 * 109.47209 * 270.00233 * 25 23 21 27 27 H 1.48498 * 109.46663 * 30.00396 * 25 23 21 28 28 H 1.48506 * 109.47020 * 149.99884 * 25 23 21 29 29 C 1.47064 * 87.88956 * 27.33928 * 20 19 18 30 30 H 1.09000 * 109.46582 * 299.99895 * 1 2 3 31 31 H 1.09004 * 109.47414 * 59.99524 * 1 2 3 32 32 H 1.08998 * 109.46800 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00197 * 264.99731 * 4 2 1 34 34 H 1.07999 * 126.81769 * 359.97438 * 8 7 5 35 35 H 1.07995 * 120.03208 * 359.97438 * 13 12 11 36 36 H 1.07997 * 119.96572 * 180.29431 * 14 13 12 37 37 H 1.08006 * 119.92755 * 179.74103 * 15 14 13 38 38 H 1.07995 * 119.96744 * 179.97438 * 16 15 14 39 39 H 1.07997 * 120.03729 * 180.02562 * 17 16 15 40 40 H 1.09005 * 113.41317 * 73.19922 * 18 2 1 41 41 H 1.08990 * 113.46627 * 105.55936 * 19 18 2 42 42 H 1.08998 * 113.51516 * 335.13103 * 19 18 2 43 43 H 0.97002 * 120.00269 * 354.95099 * 24 23 21 44 44 H 1.08993 * 113.46899 * 87.43388 * 29 20 19 45 45 H 1.08994 * 113.46640 * 217.88283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.7769 1.1379 -2.4346 7 6 2.7351 -0.6826 -3.5310 8 6 3.2896 -1.9351 -3.5834 9 7 3.6876 -2.1175 -4.8426 10 7 3.4194 -1.0679 -5.5335 11 7 2.8489 -0.1757 -4.8017 12 6 2.4197 1.0881 -5.2268 13 6 1.1726 1.5644 -4.8444 14 6 0.7549 2.8136 -5.2600 15 6 1.5722 3.5847 -6.0659 16 6 2.8121 3.1107 -6.4536 17 6 3.2381 1.8651 -6.0362 18 6 2.0401 -0.7213 1.2491 19 6 1.5899 -0.0847 2.5714 20 7 2.9391 -0.3446 3.0958 21 6 3.4927 -0.5605 4.3295 22 1 2.8570 -0.6590 5.1970 23 6 4.8712 -0.6527 4.4651 24 7 5.3909 -1.2154 5.5355 25 14 5.9884 0.0217 3.1286 26 1 6.2647 -1.0427 2.1307 27 1 5.3228 1.1677 2.4587 28 1 7.2660 0.4763 3.7341 29 6 3.4330 -0.2643 1.7129 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.3833 -2.6360 -2.7671 35 1 0.5319 0.9606 -4.2190 36 1 -0.2129 3.1865 -4.9590 37 1 1.2415 4.5595 -6.3930 38 1 3.4479 3.7152 -7.0835 39 1 4.2067 1.4956 -6.3389 40 1 1.9119 -1.8030 1.2074 41 1 0.8097 -0.6494 3.0815 42 1 1.3545 0.9761 2.4855 43 1 4.8148 -1.4995 6.2623 44 1 3.6838 0.7491 1.3997 45 1 4.2229 -0.9821 1.4917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970501597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:39 Heat of formation + Delta-G solvation = 164.394410 kcal Electronic energy + Delta-G solvation = -29229.562652 eV Core-core repulsion = 25252.071735 eV Total energy + Delta-G solvation = -3977.490917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.81059 -40.09312 -39.59033 -38.59679 -35.46315 -34.78282 -32.72127 -32.11932 -31.44887 -30.41276 -30.18144 -27.82683 -25.64661 -25.00771 -24.16894 -23.88484 -22.97521 -22.09159 -20.98593 -20.68495 -19.71623 -18.83181 -17.50803 -17.40507 -17.02745 -16.79776 -16.37804 -15.47103 -15.23113 -15.19120 -14.92403 -14.79397 -14.31413 -13.99315 -13.87083 -13.83700 -13.37582 -13.33671 -13.08746 -12.44865 -12.38748 -12.20172 -11.98525 -11.89800 -11.74918 -11.67064 -11.52465 -11.03179 -10.99909 -10.79561 -10.52775 -10.32434 -10.07266 -9.87142 -9.62486 -9.38223 -9.28394 -9.19370 -9.10888 -8.66642 -7.23578 -6.35683 -3.25556 0.17037 0.92611 1.05197 1.69005 1.98977 2.78112 2.87006 3.24950 3.37851 3.46389 3.59983 4.00434 4.20000 4.38097 4.43937 4.54715 4.56034 4.62636 4.65532 4.79166 4.86159 4.90429 5.00107 5.06993 5.22058 5.32479 5.36947 5.44869 5.52468 5.56470 5.64936 5.73265 5.83390 5.88059 5.89408 6.02057 6.02964 6.12735 6.16234 6.18885 6.24552 6.32516 6.40577 6.51483 6.84555 7.08270 7.17893 7.80882 7.98780 8.20156 8.93163 9.47056 10.33016 11.14471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002827 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.025156 B = 9900.974063 C =10275.449062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.093 0.907 4 N -0.700 5.700 5 C 0.590 3.410 6 O -0.525 6.525 7 C -0.065 4.065 8 C 0.007 3.993 9 N -0.266 5.266 10 N -0.053 5.053 11 N -0.208 5.208 12 C 0.101 3.899 13 C -0.054 4.054 14 C -0.110 4.110 15 C -0.097 4.097 16 C -0.116 4.116 17 C -0.088 4.088 18 C -0.140 4.140 19 C 0.131 3.869 20 N -0.623 5.623 21 C -0.308 4.308 22 H 0.082 0.918 23 C -0.022 4.022 24 N -0.928 5.928 25 Si 1.060 2.940 26 H -0.293 1.293 27 H -0.285 1.285 28 H -0.294 1.294 29 C 0.106 3.894 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.204 0.796 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.262 0.738 44 H 0.043 0.957 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 5.505 -24.547 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.351 5.351 5 C 0.374 3.626 6 O -0.401 6.401 7 C -0.197 4.197 8 C -0.152 4.152 9 N -0.129 5.129 10 N -0.032 5.032 11 N 0.001 4.999 12 C 0.011 3.989 13 C -0.074 4.074 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.134 4.134 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.004 3.996 20 N -0.350 5.350 21 C -0.435 4.435 22 H 0.100 0.900 23 C -0.221 4.221 24 N -0.570 5.570 25 Si 0.891 3.109 26 H -0.220 1.220 27 H -0.211 1.211 28 H -0.221 1.221 29 C -0.019 4.019 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.221 0.779 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.113 6.058 -26.150 28.347 hybrid contribution -1.700 -0.248 1.683 2.405 sum -10.813 5.810 -24.467 27.373 Atomic orbital electron populations 1.22126 0.94775 1.02252 1.02552 1.21137 0.94211 0.97398 0.82123 0.88925 1.45842 1.66162 1.14178 1.08900 1.16640 0.78603 0.85747 0.81644 1.90864 1.49455 1.16309 1.83482 1.22157 1.12097 0.97126 0.88368 1.23996 0.99593 0.94884 0.96756 1.74930 1.18574 1.15886 1.03487 1.78406 1.11543 0.93858 1.19412 1.44738 1.37005 1.12179 1.05977 1.17523 0.95782 0.82249 1.03298 1.21023 0.93145 0.96896 0.96370 1.21033 1.00663 0.93327 0.97823 1.21390 0.93931 0.99859 0.96400 1.21034 0.96770 0.95011 1.00617 1.21022 0.99317 0.93975 0.96470 1.23569 0.99220 1.00431 0.92744 1.22273 0.90486 0.96995 0.89825 1.46229 1.03883 1.83086 1.01839 1.20105 0.92229 1.47563 0.83565 0.89997 1.25734 0.94431 0.99018 1.02955 1.70909 1.37934 1.39480 1.08651 0.83779 0.75870 0.76636 0.74609 1.22044 1.21106 1.22114 1.22708 0.94655 0.98403 0.86167 0.90974 0.92419 0.92336 0.76126 0.77914 0.84879 0.84680 0.85030 0.84660 0.84801 0.88120 0.93372 0.94543 0.92764 0.93949 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.29 37.16 0.35 -1.31 16 2 C 0.16 1.89 2.43 -67.93 -0.17 1.73 16 3 H 0.09 1.31 7.39 -51.93 -0.38 0.92 16 4 N -0.70 -7.41 5.06 -54.97 -0.28 -7.69 16 5 C 0.59 7.15 7.42 -12.64 -0.09 7.06 16 6 O -0.52 -7.45 12.81 5.26 0.07 -7.38 16 7 C -0.07 -0.77 6.80 -82.24 -0.56 -1.33 16 8 C 0.01 0.08 11.54 -17.33 -0.20 -0.12 16 9 N -0.27 -3.48 12.34 30.49 0.38 -3.10 16 10 N -0.05 -0.71 12.95 60.35 0.78 0.07 16 11 N -0.21 -2.62 3.48 -7.21 -0.03 -2.64 16 12 C 0.10 1.16 5.89 -83.62 -0.49 0.67 16 13 C -0.05 -0.57 7.43 -39.39 -0.29 -0.86 16 14 C -0.11 -0.90 10.04 -39.61 -0.40 -1.30 16 15 C -0.10 -0.68 10.04 -39.55 -0.40 -1.08 16 16 C -0.12 -0.86 10.04 -39.61 -0.40 -1.26 16 17 C -0.09 -0.85 9.82 -39.39 -0.39 -1.24 16 18 C -0.14 -2.07 3.67 -89.97 -0.33 -2.40 16 19 C 0.13 2.36 7.33 -8.49 -0.06 2.30 16 20 N -0.62 -14.75 3.62 -184.57 -0.67 -15.42 16 21 C -0.31 -8.73 11.00 -15.06 -0.17 -8.89 16 22 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 24 N -0.93 -29.00 13.70 55.49 0.76 -28.24 16 25 Si 1.06 26.51 25.52 -169.99 -4.34 22.17 16 26 H -0.29 -6.96 6.89 56.52 0.39 -6.57 16 27 H -0.28 -6.72 5.96 56.52 0.34 -6.38 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 C 0.11 2.11 5.22 -8.36 -0.04 2.07 16 30 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 31 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 3.29 7.68 -40.82 -0.31 2.98 16 34 H 0.20 1.37 7.60 -52.49 -0.40 0.97 16 35 H 0.13 1.44 6.71 -52.49 -0.35 1.09 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 44 H 0.04 0.86 6.96 -51.93 -0.36 0.50 16 45 H 0.05 1.07 6.26 -51.93 -0.33 0.75 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -35.18 372.66 -7.42 -42.60 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.98 Total: 0.75 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.74 Total: -6.71 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.95 Total: -57.03 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.07 Total: -7.38 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -4.34 Total: 22.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.18 -7.42 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970501597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.992 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds