Wall clock time and date at job start Wed Apr 1 2020 00:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47241 * 2 1 4 4 N 1.46502 * 109.46933 * 240.00243 * 2 1 3 5 5 C 1.34779 * 119.99966 * 84.99838 * 4 2 1 6 6 O 1.21625 * 119.99952 * 355.25053 * 5 4 2 7 7 C 1.47147 * 120.00166 * 175.24567 * 5 4 2 8 8 C 1.37073 * 127.21161 * 354.67776 * 7 5 4 9 9 N 1.33314 * 106.37623 * 179.84506 * 8 7 5 10 10 N 1.28495 * 109.49579 * 0.42634 * 9 8 7 11 11 N 1.28722 * 110.67129 * 359.72785 * 10 9 8 12 12 C 1.40080 * 126.05835 * 180.02562 * 11 10 9 13 13 C 1.38870 * 120.06896 * 135.30897 * 12 11 10 14 14 C 1.38112 * 119.92987 * 179.69468 * 13 12 11 15 15 C 1.38286 * 120.06768 * 0.58290 * 14 13 12 16 16 C 1.38286 * 120.14297 * 359.71768 * 15 14 13 17 17 C 1.38110 * 120.06599 * 359.97438 * 16 15 14 18 18 C 1.52992 * 109.47530 * 120.00309 * 2 1 3 19 19 C 1.53503 * 114.20744 * 300.00106 * 18 2 1 20 20 N 1.47068 * 87.98351 * 220.34555 * 19 18 2 21 21 C 1.36936 * 136.05109 * 207.08854 * 20 19 18 22 22 H 1.07998 * 120.00474 * 6.11971 * 21 20 19 23 23 C 1.38816 * 119.99474 * 186.12529 * 21 20 19 24 24 N 1.31623 * 119.99659 * 198.86758 * 23 21 20 25 25 Si 1.86798 * 120.00313 * 18.86124 * 23 21 20 26 26 H 1.48491 * 109.47209 * 270.00233 * 25 23 21 27 27 H 1.48498 * 109.46663 * 30.00396 * 25 23 21 28 28 H 1.48506 * 109.47020 * 149.99884 * 25 23 21 29 29 C 1.47064 * 87.88956 * 27.33928 * 20 19 18 30 30 H 1.09000 * 109.46582 * 299.99895 * 1 2 3 31 31 H 1.09004 * 109.47414 * 59.99524 * 1 2 3 32 32 H 1.08998 * 109.46800 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00197 * 264.99731 * 4 2 1 34 34 H 1.07999 * 126.81769 * 359.97438 * 8 7 5 35 35 H 1.07995 * 120.03208 * 359.97438 * 13 12 11 36 36 H 1.07997 * 119.96572 * 180.29431 * 14 13 12 37 37 H 1.08006 * 119.92755 * 179.74103 * 15 14 13 38 38 H 1.07995 * 119.96744 * 179.97438 * 16 15 14 39 39 H 1.07997 * 120.03729 * 180.02562 * 17 16 15 40 40 H 1.09005 * 113.41317 * 73.19922 * 18 2 1 41 41 H 1.08990 * 113.46627 * 105.55936 * 19 18 2 42 42 H 1.08998 * 113.51516 * 335.13103 * 19 18 2 43 43 H 0.97002 * 120.00269 * 354.95099 * 24 23 21 44 44 H 1.08993 * 113.46899 * 87.43388 * 29 20 19 45 45 H 1.08994 * 113.46640 * 217.88283 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.7769 1.1379 -2.4346 7 6 2.7351 -0.6826 -3.5310 8 6 3.2896 -1.9351 -3.5834 9 7 3.6876 -2.1175 -4.8426 10 7 3.4194 -1.0679 -5.5335 11 7 2.8489 -0.1757 -4.8017 12 6 2.4197 1.0881 -5.2268 13 6 1.1726 1.5644 -4.8444 14 6 0.7549 2.8136 -5.2600 15 6 1.5722 3.5847 -6.0659 16 6 2.8121 3.1107 -6.4536 17 6 3.2381 1.8651 -6.0362 18 6 2.0401 -0.7213 1.2491 19 6 1.5899 -0.0847 2.5714 20 7 2.9391 -0.3446 3.0958 21 6 3.4927 -0.5605 4.3295 22 1 2.8570 -0.6590 5.1970 23 6 4.8712 -0.6527 4.4651 24 7 5.3909 -1.2154 5.5355 25 14 5.9884 0.0217 3.1286 26 1 6.2647 -1.0427 2.1307 27 1 5.3228 1.1677 2.4587 28 1 7.2660 0.4763 3.7341 29 6 3.4330 -0.2643 1.7129 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.3833 -2.6360 -2.7671 35 1 0.5319 0.9606 -4.2190 36 1 -0.2129 3.1865 -4.9590 37 1 1.2415 4.5595 -6.3930 38 1 3.4479 3.7152 -7.0835 39 1 4.2067 1.4956 -6.3389 40 1 1.9119 -1.8030 1.2074 41 1 0.8097 -0.6494 3.0815 42 1 1.3545 0.9761 2.4855 43 1 4.8148 -1.4995 6.2623 44 1 3.6838 0.7491 1.3997 45 1 4.2229 -0.9821 1.4917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970501597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:38 Heat of formation + Delta-G solvation = 139.647603 kcal Electronic energy + Delta-G solvation = -29230.635754 eV Core-core repulsion = 25252.071735 eV Total energy + Delta-G solvation = -3978.564019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.68518 -41.17479 -40.30069 -39.89972 -36.51268 -35.66190 -34.55623 -33.28595 -32.14790 -31.37627 -30.96885 -29.46885 -27.03665 -26.05944 -25.25851 -24.85148 -23.93000 -23.01910 -22.20421 -21.61681 -21.02450 -19.77847 -19.51070 -18.32862 -17.88509 -17.50257 -17.37938 -16.94530 -16.22631 -16.07796 -15.97025 -15.77768 -15.54631 -15.31826 -15.13356 -14.82839 -14.58491 -14.30203 -14.05090 -13.60224 -13.34591 -13.28187 -13.19191 -13.07997 -12.84166 -12.61755 -12.49666 -12.43586 -12.37468 -11.89984 -11.78684 -11.72796 -11.51861 -11.31432 -11.01651 -10.79106 -10.75001 -10.17332 -10.01671 -9.80598 -9.23574 -8.62266 -5.43841 -0.63106 0.26489 0.33440 0.87359 1.10663 1.37304 1.48880 1.63419 1.87060 1.97306 2.51060 2.61156 3.01582 3.16281 3.19194 3.34013 3.52379 3.63269 3.79164 3.84014 3.85863 4.10952 4.14148 4.22330 4.33225 4.38028 4.40722 4.47770 4.53548 4.64212 4.68977 4.73458 4.80465 4.82747 4.89065 4.92457 5.03548 5.20553 5.22197 5.23392 5.32729 5.38708 5.42318 5.43003 5.52405 5.86284 5.97274 6.32258 6.71378 6.93914 7.09515 7.35235 8.30228 8.89651 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002827 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.025156 B = 9900.974063 C =10275.449062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 H 0.077 0.923 4 N -0.689 5.689 5 C 0.595 3.405 6 O -0.546 6.546 7 C -0.078 4.078 8 C 0.018 3.982 9 N -0.290 5.290 10 N -0.075 5.075 11 N -0.206 5.206 12 C 0.069 3.931 13 C -0.068 4.068 14 C -0.114 4.114 15 C -0.090 4.090 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.102 4.102 19 C 0.128 3.872 20 N -0.658 5.658 21 C -0.292 4.292 22 H 0.052 0.948 23 C -0.082 4.082 24 N -0.967 5.967 25 Si 1.098 2.902 26 H -0.272 1.272 27 H -0.265 1.265 28 H -0.304 1.304 29 C 0.096 3.904 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.418 0.582 34 H 0.240 0.760 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.248 0.752 44 H 0.044 0.956 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.370 6.519 -27.060 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.062 3.938 3 H 0.095 0.905 4 N -0.341 5.341 5 C 0.379 3.621 6 O -0.424 6.424 7 C -0.211 4.211 8 C -0.142 4.142 9 N -0.152 5.152 10 N -0.053 5.053 11 N 0.002 4.998 12 C -0.020 4.020 13 C -0.089 4.089 14 C -0.133 4.133 15 C -0.108 4.108 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.121 4.121 19 C 0.002 3.998 20 N -0.386 5.386 21 C -0.420 4.420 22 H 0.070 0.930 23 C -0.275 4.275 24 N -0.613 5.613 25 Si 0.924 3.076 26 H -0.199 1.199 27 H -0.190 1.190 28 H -0.232 1.232 29 C -0.029 4.029 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.256 0.744 34 H 0.256 0.744 35 H 0.141 0.859 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.448 7.055 -28.719 31.364 hybrid contribution -1.455 -0.477 2.445 2.885 sum -11.903 6.578 -26.274 29.585 Atomic orbital electron populations 1.22072 0.92915 1.03398 1.02706 1.20883 0.95426 0.96153 0.81338 0.90463 1.45652 1.65776 1.14769 1.07940 1.16609 0.78248 0.85399 0.81859 1.90855 1.50388 1.17321 1.83847 1.22264 1.12868 0.97682 0.88239 1.24609 0.97906 0.94885 0.96765 1.74904 1.19551 1.16154 1.04625 1.78367 1.12565 0.94356 1.20026 1.44915 1.36305 1.12391 1.06145 1.17896 0.96837 0.82342 1.04939 1.21073 0.92898 0.97910 0.97007 1.21375 1.01742 0.92556 0.97607 1.21813 0.93228 1.00822 0.94981 1.21425 0.97345 0.94201 1.00118 1.21209 0.99343 0.94978 0.96729 1.23245 0.94976 1.01440 0.92470 1.22507 0.88156 0.98167 0.90953 1.46339 1.06931 1.83681 1.01669 1.19975 0.91975 1.45077 0.84934 0.93047 1.26914 0.96448 0.99717 1.04388 1.71008 1.37976 1.42643 1.09633 0.83288 0.73976 0.77229 0.73067 1.19856 1.19034 1.23183 1.22930 0.97304 0.98496 0.84162 0.90687 0.92454 0.90718 0.74450 0.74357 0.85919 0.82663 0.81694 0.81850 0.85017 0.86181 0.92555 0.93178 0.94276 0.93840 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.29 71.98 0.67 -1.99 16 2 C 0.17 3.53 2.43 44.99 0.11 3.64 16 3 H 0.08 1.96 7.39 -2.39 -0.02 1.95 16 4 N -0.69 -12.50 5.06 -446.08 -2.26 -14.75 16 5 C 0.60 13.30 7.42 86.58 0.64 13.94 16 6 O -0.55 -14.75 12.81 -4.11 -0.05 -14.81 16 7 C -0.08 -1.75 6.80 40.36 0.27 -1.47 16 8 C 0.02 0.36 11.54 84.19 0.97 1.33 16 9 N -0.29 -7.39 12.34 -57.46 -0.71 -8.10 16 10 N -0.07 -2.00 12.95 37.02 0.48 -1.52 16 11 N -0.21 -5.13 3.48 -176.72 -0.62 -5.75 16 12 C 0.07 1.56 5.89 38.13 0.22 1.79 16 13 C -0.07 -1.39 7.43 22.39 0.17 -1.22 16 14 C -0.11 -1.65 10.04 22.25 0.22 -1.43 16 15 C -0.09 -1.00 10.04 22.29 0.22 -0.78 16 16 C -0.11 -1.42 10.04 22.25 0.22 -1.20 16 17 C -0.10 -1.92 9.82 22.39 0.22 -1.70 16 18 C -0.10 -2.68 3.67 -10.37 -0.04 -2.72 16 19 C 0.13 4.28 7.33 83.19 0.61 4.89 16 20 N -0.66 -30.31 3.62 -737.84 -2.67 -32.98 16 21 C -0.29 -16.69 11.00 84.03 0.92 -15.76 16 22 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -62.27 13.70 21.65 0.30 -61.97 16 25 Si 1.10 53.36 25.52 68.60 1.75 55.11 16 26 H -0.27 -12.19 6.89 99.48 0.69 -11.50 16 27 H -0.27 -11.83 5.96 99.48 0.59 -11.24 16 28 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 29 C 0.10 3.56 5.22 83.28 0.43 4.00 16 30 H 0.07 1.28 7.48 -2.39 -0.02 1.27 16 31 H 0.06 1.05 8.11 -2.38 -0.02 1.03 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 5.23 7.68 -92.71 -0.71 4.52 16 34 H 0.24 2.44 7.60 -2.91 -0.02 2.42 16 35 H 0.12 2.63 6.71 -2.91 -0.02 2.61 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 43 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 44 H 0.04 1.64 6.96 -2.39 -0.02 1.62 16 45 H 0.05 1.82 6.26 -2.39 -0.01 1.80 16 Total: -1.00 -79.46 372.66 2.71 -76.75 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.14 Total: 11.10 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.35 Total: -3.10 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.48 Total: -125.07 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.05 Total: -14.81 kcal Atomic # 14 Polarization: 53.36 SS G_CDS: 1.75 Total: 55.11 kcal Total: -79.46 2.71 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970501597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.402 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds