Wall clock time and date at job start Wed Apr 1 2020 00:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34772 * 119.99753 * 274.99983 * 4 2 1 6 6 O 1.21602 * 120.00355 * 359.97438 * 5 4 2 7 7 C 1.47423 * 120.00028 * 180.02562 * 5 4 2 8 8 C 1.41375 * 126.40510 * 0.02562 * 7 5 4 9 9 N 1.30443 * 108.08289 * 179.97438 * 8 7 5 10 10 N 1.39941 * 108.91545 * 0.02562 * 9 8 7 11 11 C 1.39810 * 125.77826 * 180.02562 * 10 9 8 12 12 C 1.38936 * 119.68663 * 359.69812 * 11 10 9 13 13 C 1.38422 * 119.10644 * 179.79879 * 12 11 10 14 14 C 1.38800 * 118.48314 * 0.46719 * 13 12 11 15 15 C 1.38137 * 119.29102 * 359.75467 * 14 13 12 16 16 N 1.31892 * 120.83761 * 0.02562 * 15 14 13 17 17 C 1.34626 * 108.44169 * 359.72407 * 10 9 8 18 18 C 1.53004 * 109.46862 * 239.99803 * 2 1 3 19 19 C 1.53499 * 114.20194 * 175.68147 * 18 2 1 20 20 N 1.47073 * 87.98271 * 220.34656 * 19 18 2 21 21 C 1.36940 * 136.05404 * 207.09125 * 20 19 18 22 22 H 1.07992 * 120.00476 * 7.50014 * 21 20 19 23 23 C 1.38809 * 119.99403 * 187.50851 * 21 20 19 24 24 N 1.31620 * 120.00068 * 174.39899 * 23 21 20 25 25 Si 1.86807 * 120.00352 * 354.39502 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95922 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.96098 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.96130 * 25 23 21 29 29 C 1.47068 * 87.88382 * 27.34125 * 20 19 18 30 30 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 31 31 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 32 32 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.07998 * 125.95891 * 359.97438 * 8 7 5 35 35 H 1.08001 * 120.45351 * 0.02562 * 12 11 10 36 36 H 1.07999 * 120.76335 * 180.22497 * 13 12 11 37 37 H 1.07991 * 120.35476 * 179.72847 * 14 13 12 38 38 H 1.07997 * 119.57802 * 179.97438 * 15 14 13 39 39 H 1.08003 * 126.31424 * 180.26837 * 17 10 9 40 40 H 1.08999 * 113.41397 * 308.87998 * 18 2 1 41 41 H 1.08997 * 113.46896 * 105.57052 * 19 18 2 42 42 H 1.09003 * 113.52350 * 335.12944 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.00405 * 24 23 21 44 44 H 1.09002 * 113.46505 * 87.44231 * 29 20 19 45 45 H 1.08999 * 113.46808 * 217.87742 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8583 1.1618 2.4116 7 6 2.6390 -0.7130 3.5607 8 6 3.0132 -2.0733 3.6502 9 7 3.3930 -2.3090 4.8757 10 7 3.2817 -1.1291 5.6199 11 6 3.5972 -0.9842 6.9742 12 6 4.0610 -2.0785 7.6936 13 6 4.3738 -1.9205 9.0328 14 6 4.2013 -0.6699 9.6097 15 6 3.7312 0.3727 8.8350 16 7 3.4459 0.1925 7.5600 17 6 2.8258 -0.1557 4.8094 18 6 2.0399 -0.7213 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0528 -0.7332 -4.0013 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5117 30 1 -0.3633 0.5841 0.8455 31 1 -0.3633 0.4403 -0.9286 32 1 -0.3633 -1.0243 0.0831 33 1 2.2491 -1.6318 1.1526 34 1 2.9889 -2.7921 2.8445 35 1 4.1795 -3.0388 7.2137 36 1 4.7399 -2.7522 9.6164 37 1 4.4317 -0.5138 10.6531 38 1 3.5949 1.3476 9.2792 39 1 2.6384 0.8714 5.0859 40 1 1.5924 -1.7045 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2744 -0.0730 -3.2203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970522896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:15 Heat of formation + Delta-G solvation = 126.093356 kcal Electronic energy + Delta-G solvation = -28040.561861 eV Core-core repulsion = 24061.410086 eV Total energy + Delta-G solvation = -3979.151775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.88792 -41.19204 -40.78093 -39.69850 -36.24825 -34.92970 -34.45991 -33.62118 -32.27367 -31.54627 -30.42207 -29.51759 -26.94899 -25.94653 -25.14035 -24.94573 -23.60036 -22.42177 -22.01622 -21.30799 -20.89937 -19.77797 -19.51572 -17.86752 -17.52498 -17.48010 -16.96008 -16.88070 -16.71291 -16.11160 -15.93472 -15.67031 -15.54103 -15.28927 -15.12130 -14.83105 -14.63523 -14.35872 -14.20387 -13.91070 -13.64221 -13.29848 -13.10741 -13.06539 -13.00996 -12.59240 -12.36760 -12.32481 -11.99331 -11.65507 -11.63084 -11.28059 -11.10612 -11.03153 -11.00342 -10.79294 -10.75296 -10.41675 -10.02687 -9.44452 -9.21198 -8.60671 -5.46704 -0.52390 0.13715 0.69401 0.86819 1.07347 1.40443 1.51256 1.69497 2.18201 2.39329 2.56269 2.70808 3.00150 3.12382 3.20673 3.32576 3.55777 3.69003 3.87493 3.91141 3.95897 3.98667 4.05263 4.21677 4.25131 4.32647 4.37261 4.51389 4.60346 4.61778 4.68693 4.69473 4.79123 4.83238 4.92295 4.95584 5.10368 5.12942 5.21454 5.24264 5.35092 5.41312 5.48908 5.58374 5.81597 5.96019 6.14631 6.63832 6.70729 6.77155 7.30501 7.33716 8.28960 8.90787 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027107 B = 0.001941 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.702009 B =14425.519660 C =14879.390448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.069 0.931 4 N -0.702 5.702 5 C 0.598 3.402 6 O -0.587 6.587 7 C -0.293 4.293 8 C 0.110 3.890 9 N -0.300 5.300 10 N -0.319 5.319 11 C 0.325 3.675 12 C -0.168 4.168 13 C -0.049 4.049 14 C -0.167 4.167 15 C 0.121 3.879 16 N -0.533 5.533 17 C 0.145 3.855 18 C -0.102 4.102 19 C 0.126 3.874 20 N -0.662 5.662 21 C -0.291 4.291 22 H 0.050 0.950 23 C -0.088 4.088 24 N -0.971 5.971 25 Si 1.107 2.893 26 H -0.306 1.306 27 H -0.262 1.262 28 H -0.264 1.264 29 C 0.097 3.903 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.237 0.763 35 H 0.149 0.851 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.194 0.806 39 H 0.192 0.808 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.245 0.755 44 H 0.049 0.951 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -4.800 37.661 38.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.087 0.913 4 N -0.352 5.352 5 C 0.386 3.614 6 O -0.469 6.469 7 C -0.307 4.307 8 C -0.080 4.080 9 N -0.118 5.118 10 N -0.093 5.093 11 C 0.101 3.899 12 C -0.190 4.190 13 C -0.075 4.075 14 C -0.187 4.187 15 C -0.036 4.036 16 N -0.247 5.247 17 C -0.003 4.003 18 C -0.122 4.122 19 C 0.001 3.999 20 N -0.391 5.391 21 C -0.418 4.418 22 H 0.068 0.932 23 C -0.279 4.279 24 N -0.617 5.617 25 Si 0.932 3.068 26 H -0.234 1.234 27 H -0.188 1.188 28 H -0.189 1.189 29 C -0.028 4.028 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.251 0.749 34 H 0.253 0.747 35 H 0.166 0.834 36 H 0.196 0.804 37 H 0.199 0.801 38 H 0.211 0.789 39 H 0.209 0.791 40 H 0.140 0.860 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.445 -3.513 36.863 37.587 hybrid contribution 1.923 -0.951 0.153 2.151 sum -4.522 -4.464 37.016 37.557 Atomic orbital electron populations 1.22096 0.93565 1.03275 1.02416 1.20764 0.95049 0.96114 0.82337 0.91321 1.45610 1.66723 1.14602 1.08282 1.17276 0.76270 0.85322 0.82536 1.90766 1.53167 1.17248 1.85678 1.20296 1.19754 0.95911 0.94722 1.24881 0.92936 0.95109 0.95042 1.77224 1.25814 1.03534 1.05182 1.45599 1.48686 1.07971 1.07027 1.18047 0.98421 0.92026 0.81450 1.21824 1.01980 0.99020 0.96185 1.22028 0.93456 0.99350 0.92676 1.22677 0.99594 0.92820 1.03575 1.23202 0.92670 1.01592 0.86171 1.66849 1.19836 1.22830 1.15180 1.23245 0.91892 0.95963 0.89223 1.23276 0.95907 1.00459 0.92538 1.22499 0.95220 0.98953 0.83212 1.46115 1.21039 1.69941 1.01957 1.20029 1.07234 1.28835 0.85723 0.93238 1.27109 1.08687 1.01055 0.91063 1.71027 1.11976 1.48938 1.29727 0.83310 0.72273 0.76477 0.74713 1.23437 1.18846 1.18922 1.22958 0.88469 0.96483 0.94923 0.92995 0.90950 0.90446 0.74856 0.74704 0.83352 0.80373 0.80071 0.78882 0.79119 0.85983 0.92599 0.94609 0.94598 0.93374 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.48 71.98 0.68 -2.72 16 2 C 0.16 4.14 2.35 44.99 0.11 4.24 16 3 H 0.07 2.12 7.41 -2.39 -0.02 2.10 16 4 N -0.70 -15.08 4.93 -445.80 -2.20 -17.28 16 5 C 0.60 15.58 7.78 86.66 0.67 16.26 16 6 O -0.59 -20.04 16.56 -4.04 -0.07 -20.11 16 7 C -0.29 -6.54 6.13 -20.14 -0.12 -6.66 16 8 C 0.11 1.90 11.50 85.67 0.99 2.89 16 9 N -0.30 -6.22 11.74 -56.22 -0.66 -6.88 16 10 N -0.32 -7.11 3.76 -191.05 -0.72 -7.83 16 11 C 0.33 6.39 7.54 132.77 1.00 7.39 16 12 C -0.17 -2.36 9.69 22.48 0.22 -2.14 16 13 C -0.05 -0.33 10.17 22.45 0.23 -0.11 16 14 C -0.17 -0.84 10.11 22.38 0.23 -0.61 16 15 C 0.12 1.19 11.18 84.66 0.95 2.14 16 16 N -0.53 -9.71 9.82 -192.81 -1.89 -11.61 16 17 C 0.14 3.40 10.86 84.21 0.91 4.31 16 18 C -0.10 -2.99 3.52 -10.37 -0.04 -3.03 16 19 C 0.13 4.63 8.12 83.18 0.68 5.31 16 20 N -0.66 -31.94 3.69 -737.87 -2.72 -34.67 16 21 C -0.29 -17.18 11.08 84.03 0.93 -16.24 16 22 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 23 C -0.09 -5.34 5.50 84.86 0.47 -4.87 16 24 N -0.97 -63.93 13.70 21.65 0.30 -63.63 16 25 Si 1.11 53.94 25.16 68.60 1.73 55.66 16 26 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 27 H -0.26 -11.41 6.51 99.48 0.65 -10.77 16 28 H -0.26 -11.76 6.21 99.48 0.62 -11.14 16 29 C 0.10 3.79 5.27 83.27 0.44 4.23 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.41 6.22 7.56 -92.71 -0.70 5.52 16 34 H 0.24 1.99 7.50 -2.91 -0.02 1.97 16 35 H 0.15 2.02 7.67 -2.91 -0.02 2.00 16 36 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.18 -0.46 8.06 -2.92 -0.02 -0.49 16 38 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.19 4.44 8.03 -2.91 -0.02 4.41 16 40 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.35 8.11 -2.39 -0.02 1.33 16 43 H 0.25 16.21 8.73 -92.70 -0.81 15.40 16 44 H 0.05 1.90 7.50 -2.39 -0.02 1.88 16 45 H 0.06 2.19 4.72 -2.39 -0.01 2.17 16 Total: -1.00 -85.61 379.63 2.23 -83.38 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.14 Total: 12.57 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 8.33 Total: 10.39 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -7.90 Total: -141.90 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.07 Total: -20.11 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 1.73 Total: 55.66 kcal Total: -85.61 2.23 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.471 kcal (2) G-P(sol) polarization free energy of solvation -85.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds