Wall clock time and date at job start Wed Apr 1 2020 00:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47254 * 2 1 4 4 N 1.46504 * 109.47118 * 239.99502 * 2 1 3 5 5 C 1.34775 * 119.99392 * 85.00163 * 4 2 1 6 6 O 1.21597 * 120.00751 * 359.97438 * 5 4 2 7 7 C 1.47426 * 119.99719 * 180.02562 * 5 4 2 8 8 C 1.41375 * 126.40347 * 359.97115 * 7 5 4 9 9 N 1.30447 * 108.07831 * 180.02562 * 8 7 5 10 10 N 1.39942 * 108.91326 * 359.97438 * 9 8 7 11 11 C 1.39810 * 125.77406 * 179.97438 * 10 9 8 12 12 C 1.38952 * 119.68692 * 359.74669 * 11 10 9 13 13 C 1.38420 * 119.10097 * 179.77754 * 12 11 10 14 14 C 1.38790 * 118.48810 * 0.49240 * 13 12 11 15 15 C 1.38133 * 119.29087 * 359.75089 * 14 13 12 16 16 N 1.31883 * 120.84422 * 0.02562 * 15 14 13 17 17 C 1.34614 * 108.44884 * 0.02562 * 10 9 8 18 18 C 1.52996 * 109.47180 * 119.99726 * 2 1 3 19 19 C 1.53950 * 113.74229 * 281.82587 * 18 2 1 20 20 N 1.47821 * 86.03582 * 222.08400 * 19 18 2 21 21 C 1.36932 * 134.45612 * 204.64717 * 20 19 18 22 22 H 1.07999 * 120.00143 * 179.86673 * 21 20 19 23 23 C 1.38817 * 119.99946 * 359.85905 * 21 20 19 24 24 N 1.31613 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99760 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47149 * 90.00061 * 25 23 21 27 27 H 1.48498 * 109.46914 * 210.00038 * 25 23 21 28 28 H 1.48502 * 109.47333 * 330.00273 * 25 23 21 29 29 C 1.47579 * 91.04839 * 24.54527 * 20 19 18 30 30 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47132 * 300.07642 * 1 2 3 32 32 H 1.09001 * 109.47214 * 60.07830 * 1 2 3 33 33 H 0.96991 * 120.00184 * 265.00082 * 4 2 1 34 34 H 1.07995 * 125.96287 * 0.02562 * 8 7 5 35 35 H 1.07996 * 120.44945 * 0.02562 * 12 11 10 36 36 H 1.07998 * 120.75582 * 180.24523 * 13 12 11 37 37 H 1.07999 * 120.35540 * 179.72707 * 14 13 12 38 38 H 1.08000 * 119.57976 * 179.97438 * 15 14 13 39 39 H 1.08000 * 126.31691 * 180.02562 * 17 10 9 40 40 H 1.09006 * 112.94814 * 53.41497 * 18 2 1 41 41 H 1.08996 * 113.76870 * 336.34313 * 19 18 2 42 42 H 1.08996 * 113.77449 * 107.74697 * 19 18 2 43 43 H 0.97002 * 119.99556 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.77035 * 221.14965 * 29 20 19 45 45 H 1.09002 * 113.87350 * 89.77298 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8575 1.1613 -2.4119 7 6 2.6379 -0.7135 -3.5609 8 6 3.0111 -2.0742 -3.6506 9 7 3.3901 -2.3101 -4.8763 10 7 3.2794 -1.1301 -5.6204 11 6 3.5943 -0.9854 -6.9748 12 6 4.0680 -2.0773 -7.6917 13 6 4.3717 -1.9216 -9.0332 14 6 4.1998 -0.6710 -9.6100 15 6 3.7294 0.3716 -8.8354 16 7 3.4442 0.1916 -7.5604 17 6 2.8193 -0.1577 -4.8111 18 6 2.0400 -0.7212 1.2492 19 6 1.9744 0.1331 2.5283 20 7 3.3099 -0.4177 2.8417 21 6 4.0194 -0.6142 3.9963 22 1 5.0066 -1.0502 3.9558 23 6 3.4698 -0.2529 5.2187 24 7 2.2665 0.2781 5.2680 25 14 4.4380 -0.5204 6.7936 26 1 5.2532 0.6864 7.0845 27 1 3.4982 -0.7654 7.9169 28 1 5.3325 -1.6946 6.6315 29 6 3.5701 -0.6729 1.4116 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 2.2490 -1.6318 -1.1525 34 1 2.9866 -2.7929 -2.8449 35 1 4.1938 -3.0356 -7.2098 36 1 4.7379 -2.7533 -9.6167 37 1 4.4316 -0.5145 -10.6531 38 1 3.5943 1.3468 -9.2794 39 1 2.6270 0.8681 -5.0890 40 1 1.6176 -1.7193 1.3660 41 1 1.9751 1.2067 2.3401 42 1 1.1954 -0.1775 3.2246 43 1 1.8824 0.5302 6.1223 44 1 4.0628 -1.6257 1.2179 45 1 4.0408 0.1623 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970522897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:19 Heat of formation + Delta-G solvation = 144.335473 kcal Electronic energy + Delta-G solvation = -27923.641950 eV Core-core repulsion = 23945.281212 eV Total energy + Delta-G solvation = -3978.360738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08773 -40.46544 -39.38164 -37.85862 -34.72895 -34.21950 -33.08527 -32.13392 -31.00382 -30.67502 -29.49581 -27.43062 -25.21180 -24.57386 -24.38795 -23.92149 -22.65590 -21.57793 -20.86509 -20.11422 -19.35213 -18.61189 -17.06166 -16.94450 -16.67528 -16.18106 -16.10585 -15.87440 -15.23507 -14.79065 -14.72621 -14.67910 -14.17369 -13.88797 -13.85074 -13.76055 -13.50005 -13.10823 -13.02988 -12.64136 -12.25409 -11.99803 -11.56853 -11.51276 -11.34154 -11.17832 -10.97377 -10.85555 -10.62603 -10.50412 -10.30734 -10.25165 -10.02624 -9.77436 -9.61423 -9.55602 -9.37328 -8.87723 -8.75935 -8.64029 -6.83236 -5.73228 -3.04919 0.11415 0.60265 1.51754 1.59681 1.88349 3.22175 3.32774 3.41597 3.46228 3.48210 3.48945 3.78837 3.97413 4.30150 4.39033 4.45965 4.48610 4.56172 4.72335 4.88824 5.05886 5.15153 5.17127 5.23021 5.39843 5.43798 5.45927 5.56080 5.59968 5.72700 5.87578 5.88628 5.98220 6.06734 6.14929 6.35403 6.42215 6.51571 6.54522 6.65683 6.69305 6.86877 6.88822 7.27114 7.36661 7.41414 7.60183 7.74492 8.02123 8.43064 9.08527 9.74726 10.64491 11.44095 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.176505 B =15167.321622 C =15686.462768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.713 5.713 5 C 0.593 3.407 6 O -0.547 6.547 7 C -0.279 4.279 8 C 0.102 3.898 9 N -0.288 5.288 10 N -0.319 5.319 11 C 0.367 3.633 12 C -0.160 4.160 13 C -0.052 4.052 14 C -0.185 4.185 15 C 0.135 3.865 16 N -0.505 5.505 17 C 0.153 3.847 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.202 0.798 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.196 0.804 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 -5.525 -30.994 31.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.363 5.363 5 C 0.379 3.621 6 O -0.426 6.426 7 C -0.293 4.293 8 C -0.088 4.088 9 N -0.105 5.105 10 N -0.093 5.093 11 C 0.140 3.860 12 C -0.182 4.182 13 C -0.079 4.079 14 C -0.205 4.205 15 C -0.023 4.023 16 N -0.218 5.218 17 C 0.007 3.993 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.219 0.781 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.186 0.814 39 H 0.213 0.787 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.327 -4.841 -31.037 31.414 hybrid contribution 0.709 -0.529 1.022 1.351 sum 1.036 -5.370 -30.015 30.509 Atomic orbital electron populations 1.22113 0.95463 1.01775 1.02271 1.21113 0.93760 0.97492 0.82829 0.89376 1.45885 1.67026 1.13869 1.09471 1.17093 0.77135 0.85895 0.81957 1.90783 1.51302 1.15442 1.85038 1.20511 1.18284 0.94962 0.95558 1.24375 0.94276 0.95548 0.94631 1.77257 1.25337 1.03166 1.04729 1.45419 1.49186 1.08328 1.06368 1.17725 0.95789 0.90809 0.81658 1.21670 1.01812 0.99798 0.94949 1.21573 0.94697 0.97906 0.93677 1.22221 1.02278 0.93881 1.02166 1.22584 0.93001 0.99739 0.86999 1.66882 1.18916 1.22545 1.13425 1.23195 0.91691 0.95728 0.88734 1.23850 0.97547 1.00742 0.94531 1.22234 0.89580 0.93915 0.89317 1.45994 1.16361 1.71869 0.99657 1.19022 0.98408 1.34672 0.82854 0.90350 1.24775 0.97066 1.01223 0.97461 1.69807 1.15313 1.47402 1.24344 0.86136 0.78780 0.77757 0.83182 1.21675 1.21639 1.20673 1.22535 0.93109 0.97679 0.86747 0.92773 0.91121 0.92782 0.76952 0.78137 0.83142 0.83657 0.83838 0.81382 0.78715 0.89312 0.95396 0.90711 0.93660 0.94170 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.44 37.16 0.35 -1.88 16 2 C 0.15 2.35 2.29 -67.93 -0.16 2.20 16 3 H 0.09 1.58 7.48 -51.93 -0.39 1.19 16 4 N -0.71 -9.28 4.94 -54.88 -0.27 -9.55 16 5 C 0.59 8.55 7.78 -12.52 -0.10 8.45 16 6 O -0.55 -9.88 16.56 5.28 0.09 -9.80 16 7 C -0.28 -3.39 6.13 -105.05 -0.64 -4.03 16 8 C 0.10 1.02 11.50 -16.95 -0.19 0.82 16 9 N -0.29 -3.21 11.74 30.88 0.36 -2.84 16 10 N -0.32 -3.66 3.76 -11.74 -0.04 -3.71 16 11 C 0.37 3.74 7.54 -154.37 -1.16 2.57 16 12 C -0.16 -1.24 9.69 -39.25 -0.38 -1.63 16 13 C -0.05 -0.26 10.17 -39.31 -0.40 -0.66 16 14 C -0.18 -0.81 10.11 -39.42 -0.40 -1.20 16 15 C 0.13 0.82 11.18 -17.57 -0.20 0.62 16 16 N -0.50 -4.82 9.82 -12.29 -0.12 -4.94 16 17 C 0.15 1.84 10.86 -16.41 -0.18 1.66 16 18 C -0.15 -2.60 3.35 -89.69 -0.30 -2.90 16 19 C 0.18 4.07 6.98 -2.83 -0.02 4.05 16 20 N -0.61 -15.78 3.70 -177.67 -0.66 -16.44 16 21 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.47 11.39 55.49 0.63 -26.83 16 25 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.13 2.53 8.37 -2.97 -0.02 2.51 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.06 7.55 -40.82 -0.31 3.75 16 34 H 0.20 1.27 7.50 -52.49 -0.39 0.88 16 35 H 0.15 1.11 7.67 -52.49 -0.40 0.71 16 36 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 38 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.20 2.22 8.03 -52.49 -0.42 1.80 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 42 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -36.14 386.88 -9.31 -45.45 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.05 Total: 1.74 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -4.06 Total: 3.77 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.10 Total: -64.32 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.14 -9.31 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.789 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds