Wall clock time and date at job start Wed Apr 1 2020 00:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47254 * 2 1 4 4 N 1.46504 * 109.47118 * 239.99502 * 2 1 3 5 5 C 1.34775 * 119.99392 * 85.00163 * 4 2 1 6 6 O 1.21597 * 120.00751 * 359.97438 * 5 4 2 7 7 C 1.47426 * 119.99719 * 180.02562 * 5 4 2 8 8 C 1.41375 * 126.40347 * 359.97115 * 7 5 4 9 9 N 1.30447 * 108.07831 * 180.02562 * 8 7 5 10 10 N 1.39942 * 108.91326 * 359.97438 * 9 8 7 11 11 C 1.39810 * 125.77406 * 179.97438 * 10 9 8 12 12 C 1.38952 * 119.68692 * 359.74669 * 11 10 9 13 13 C 1.38420 * 119.10097 * 179.77754 * 12 11 10 14 14 C 1.38790 * 118.48810 * 0.49240 * 13 12 11 15 15 C 1.38133 * 119.29087 * 359.75089 * 14 13 12 16 16 N 1.31883 * 120.84422 * 0.02562 * 15 14 13 17 17 C 1.34614 * 108.44884 * 0.02562 * 10 9 8 18 18 C 1.52996 * 109.47180 * 119.99726 * 2 1 3 19 19 C 1.53950 * 113.74229 * 281.82587 * 18 2 1 20 20 N 1.47821 * 86.03582 * 222.08400 * 19 18 2 21 21 C 1.36932 * 134.45612 * 204.64717 * 20 19 18 22 22 H 1.07999 * 120.00143 * 179.86673 * 21 20 19 23 23 C 1.38817 * 119.99946 * 359.85905 * 21 20 19 24 24 N 1.31613 * 119.99927 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99760 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47149 * 90.00061 * 25 23 21 27 27 H 1.48498 * 109.46914 * 210.00038 * 25 23 21 28 28 H 1.48502 * 109.47333 * 330.00273 * 25 23 21 29 29 C 1.47579 * 91.04839 * 24.54527 * 20 19 18 30 30 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47132 * 300.07642 * 1 2 3 32 32 H 1.09001 * 109.47214 * 60.07830 * 1 2 3 33 33 H 0.96991 * 120.00184 * 265.00082 * 4 2 1 34 34 H 1.07995 * 125.96287 * 0.02562 * 8 7 5 35 35 H 1.07996 * 120.44945 * 0.02562 * 12 11 10 36 36 H 1.07998 * 120.75582 * 180.24523 * 13 12 11 37 37 H 1.07999 * 120.35540 * 179.72707 * 14 13 12 38 38 H 1.08000 * 119.57976 * 179.97438 * 15 14 13 39 39 H 1.08000 * 126.31691 * 180.02562 * 17 10 9 40 40 H 1.09006 * 112.94814 * 53.41497 * 18 2 1 41 41 H 1.08996 * 113.76870 * 336.34313 * 19 18 2 42 42 H 1.08996 * 113.77449 * 107.74697 * 19 18 2 43 43 H 0.97002 * 119.99556 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.77035 * 221.14965 * 29 20 19 45 45 H 1.09002 * 113.87350 * 89.77298 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8575 1.1613 -2.4119 7 6 2.6379 -0.7135 -3.5609 8 6 3.0111 -2.0742 -3.6506 9 7 3.3901 -2.3101 -4.8763 10 7 3.2794 -1.1301 -5.6204 11 6 3.5943 -0.9854 -6.9748 12 6 4.0680 -2.0773 -7.6917 13 6 4.3717 -1.9216 -9.0332 14 6 4.1998 -0.6710 -9.6100 15 6 3.7294 0.3716 -8.8354 16 7 3.4442 0.1916 -7.5604 17 6 2.8193 -0.1577 -4.8111 18 6 2.0400 -0.7212 1.2492 19 6 1.9744 0.1331 2.5283 20 7 3.3099 -0.4177 2.8417 21 6 4.0194 -0.6142 3.9963 22 1 5.0066 -1.0502 3.9558 23 6 3.4698 -0.2529 5.2187 24 7 2.2665 0.2781 5.2680 25 14 4.4380 -0.5204 6.7936 26 1 5.2532 0.6864 7.0845 27 1 3.4982 -0.7654 7.9169 28 1 5.3325 -1.6946 6.6315 29 6 3.5701 -0.6729 1.4116 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 2.2490 -1.6318 -1.1525 34 1 2.9866 -2.7929 -2.8449 35 1 4.1938 -3.0356 -7.2098 36 1 4.7379 -2.7533 -9.6167 37 1 4.4316 -0.5145 -10.6531 38 1 3.5943 1.3468 -9.2794 39 1 2.6270 0.8681 -5.0890 40 1 1.6176 -1.7193 1.3660 41 1 1.9751 1.2067 2.3401 42 1 1.1954 -0.1775 3.2246 43 1 1.8824 0.5302 6.1223 44 1 4.0628 -1.6257 1.2179 45 1 4.0408 0.1623 0.8930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970522897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:18 Heat of formation + Delta-G solvation = 120.714663 kcal Electronic energy + Delta-G solvation = -27924.666225 eV Core-core repulsion = 23945.281212 eV Total energy + Delta-G solvation = -3979.385013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.87061 -41.12553 -40.59917 -39.41066 -36.13177 -34.90139 -34.09807 -33.60297 -32.16545 -31.50877 -30.36923 -29.27829 -26.62870 -25.89972 -25.33584 -24.93218 -23.71200 -22.49327 -22.04200 -21.24929 -20.64968 -19.65460 -18.74887 -17.76992 -17.51049 -17.23751 -16.89745 -16.79659 -16.68730 -16.06345 -15.81376 -15.70767 -15.43099 -15.22268 -14.85895 -14.74629 -14.51219 -14.18765 -14.03098 -13.87217 -13.35183 -13.22896 -13.05524 -13.03161 -12.93319 -12.64991 -12.44188 -12.30244 -11.97894 -11.76669 -11.63088 -11.52963 -11.18248 -11.01814 -10.90389 -10.84317 -10.76471 -10.39801 -9.99154 -9.42680 -8.89168 -7.88435 -5.21497 -0.51007 0.15217 0.71026 0.88505 1.09073 1.46279 1.48445 1.56967 2.22689 2.41219 2.49152 2.72231 3.14493 3.31974 3.34209 3.42955 3.67447 3.77842 3.91355 3.97538 3.99969 4.03302 4.07422 4.23382 4.32628 4.37914 4.49176 4.61596 4.63844 4.70188 4.82544 4.90347 4.91771 4.96735 5.01358 5.13453 5.16310 5.25986 5.28578 5.36239 5.42767 5.56861 5.60277 5.70375 5.83113 5.96859 6.16171 6.67294 6.78955 6.94497 7.33492 7.63192 8.59453 9.28629 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.176505 B =15167.321622 C =15686.462768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.164 3.836 3 H 0.060 0.940 4 N -0.699 5.699 5 C 0.596 3.404 6 O -0.590 6.590 7 C -0.292 4.292 8 C 0.111 3.889 9 N -0.299 5.299 10 N -0.319 5.319 11 C 0.326 3.674 12 C -0.167 4.167 13 C -0.049 4.049 14 C -0.167 4.167 15 C 0.121 3.879 16 N -0.534 5.534 17 C 0.144 3.856 18 C -0.107 4.107 19 C 0.169 3.831 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.266 1.266 29 C 0.127 3.873 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.414 0.586 34 H 0.238 0.762 35 H 0.149 0.851 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.194 0.806 39 H 0.191 0.809 40 H 0.109 0.891 41 H 0.010 0.990 42 H 0.047 0.953 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 -7.647 -33.526 34.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.078 0.922 4 N -0.350 5.350 5 C 0.384 3.616 6 O -0.472 6.472 7 C -0.306 4.306 8 C -0.079 4.079 9 N -0.116 5.116 10 N -0.093 5.093 11 C 0.101 3.899 12 C -0.190 4.190 13 C -0.075 4.075 14 C -0.187 4.187 15 C -0.037 4.037 16 N -0.248 5.248 17 C -0.003 4.003 18 C -0.127 4.127 19 C 0.043 3.957 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.002 3.998 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.251 0.749 34 H 0.254 0.746 35 H 0.167 0.833 36 H 0.197 0.803 37 H 0.199 0.801 38 H 0.211 0.789 39 H 0.208 0.792 40 H 0.127 0.873 41 H 0.028 0.972 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.416 -7.019 -33.625 34.379 hybrid contribution 0.440 0.180 1.581 1.651 sum 1.856 -6.838 -32.044 32.818 Atomic orbital electron populations 1.22047 0.94101 1.03067 1.01788 1.20752 0.94673 0.95900 0.82780 0.92151 1.45617 1.66561 1.14547 1.08251 1.17335 0.76309 0.85340 0.82597 1.90763 1.53268 1.17421 1.85714 1.20285 1.19742 0.96021 0.94560 1.24885 0.92910 0.95005 0.95060 1.77220 1.25854 1.03421 1.05126 1.45594 1.48617 1.08004 1.07053 1.18059 0.98390 0.92042 0.81444 1.21829 1.01890 0.99058 0.96177 1.22026 0.93498 0.99330 0.92630 1.22673 0.99583 0.92819 1.03593 1.23195 0.92697 1.01611 0.86164 1.66847 1.19929 1.22821 1.15182 1.23223 0.91929 0.95964 0.89231 1.23448 0.95924 1.00470 0.92828 1.22147 0.88202 0.93705 0.91602 1.46431 1.17316 1.72082 1.01216 1.19439 0.98749 1.33926 0.84208 0.89910 1.25629 0.98162 1.01702 1.00670 1.69999 1.16852 1.48811 1.24578 0.85086 0.77408 0.77880 0.79001 1.21752 1.21921 1.19086 1.22685 0.94921 0.98511 0.83680 0.90551 0.91857 0.93063 0.74857 0.74618 0.83290 0.80327 0.80056 0.78934 0.79194 0.87254 0.97219 0.93436 0.94275 0.91746 0.95211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 9.44 71.98 0.68 -3.49 16 2 C 0.16 4.98 2.29 44.99 0.10 5.08 16 3 H 0.06 2.22 7.48 -2.39 -0.02 2.20 16 4 N -0.70 -17.20 4.94 -445.81 -2.20 -19.40 16 5 C 0.60 17.06 7.78 86.66 0.67 17.74 16 6 O -0.59 -21.91 16.56 -4.02 -0.07 -21.97 16 7 C -0.29 -6.99 6.13 -20.14 -0.12 -7.11 16 8 C 0.11 2.04 11.50 85.67 0.99 3.03 16 9 N -0.30 -6.41 11.74 -56.22 -0.66 -7.07 16 10 N -0.32 -7.38 3.76 -191.04 -0.72 -8.10 16 11 C 0.33 6.60 7.54 132.77 1.00 7.60 16 12 C -0.17 -2.42 9.69 22.48 0.22 -2.20 16 13 C -0.05 -0.35 10.17 22.45 0.23 -0.12 16 14 C -0.17 -0.91 10.11 22.38 0.23 -0.68 16 15 C 0.12 1.26 11.18 84.66 0.95 2.21 16 16 N -0.53 -10.13 9.82 -192.79 -1.89 -12.02 16 17 C 0.14 3.58 10.86 84.21 0.91 4.49 16 18 C -0.11 -3.69 3.35 -10.14 -0.03 -3.72 16 19 C 0.17 8.05 6.98 86.44 0.60 8.65 16 20 N -0.64 -33.32 3.70 -716.01 -2.65 -35.97 16 21 C -0.23 -13.36 10.70 84.04 0.90 -12.46 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 24 N -0.95 -58.28 11.39 21.65 0.25 -58.03 16 25 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 C 0.13 4.98 8.37 86.48 0.72 5.70 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.41 7.28 7.55 -92.72 -0.70 6.58 16 34 H 0.24 2.23 7.50 -2.91 -0.02 2.21 16 35 H 0.15 2.08 7.67 -2.91 -0.02 2.06 16 36 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.18 -0.40 8.06 -2.91 -0.02 -0.42 16 38 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 39 H 0.19 4.69 8.03 -2.91 -0.02 4.67 16 40 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 42 H 0.05 2.50 7.16 -2.39 -0.02 2.49 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -81.90 386.88 2.91 -78.98 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.32 Total: 14.04 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 8.51 Total: 21.22 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -7.88 Total: -140.59 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.07 Total: -21.97 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -81.90 2.91 -78.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.697 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds