Wall clock time and date at job start Wed Apr 1 2020 00:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21579 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.47668 * 120.00354 * 179.97438 * 5 4 2 8 8 C 1.39703 * 120.07958 * 359.72017 * 7 5 4 9 9 C 1.37735 * 119.91844 * 179.73925 * 8 7 5 10 10 C 1.39024 * 120.08070 * 0.53935 * 9 8 7 11 11 N 1.39926 * 119.91802 * 179.69702 * 10 9 8 12 12 C 1.36357 * 127.11460 * 179.70837 * 11 10 9 13 13 N 1.30504 * 107.19691 * 179.83433 * 12 11 10 14 14 N 1.28538 * 109.91670 * 0.43691 * 13 12 11 15 15 C 1.30498 * 109.92249 * 359.72043 * 14 13 12 16 16 C 1.39024 * 120.16298 * 359.71200 * 10 9 8 17 17 C 1.37734 * 120.07697 * 0.03056 * 16 10 9 18 18 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 19 19 C 1.53496 * 114.20179 * 60.00300 * 18 2 1 20 20 N 1.47070 * 87.98352 * 87.52002 * 19 18 2 21 21 C 1.36935 * 136.05550 * 207.07944 * 20 19 18 22 22 H 1.08005 * 120.00172 * 6.50069 * 21 20 19 23 23 C 1.38815 * 119.99990 * 186.49806 * 21 20 19 24 24 N 1.31619 * 119.99663 * 6.42579 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 186.42252 * 23 21 20 26 26 H 1.48495 * 109.47340 * 265.02201 * 25 23 21 27 27 H 1.48498 * 109.46951 * 25.02385 * 25 23 21 28 28 H 1.48498 * 109.46744 * 145.01993 * 25 23 21 29 29 C 1.47064 * 87.88277 * 27.34197 * 20 19 18 30 30 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 32 32 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 33 33 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 34 34 H 1.08001 * 120.04070 * 359.97438 * 8 7 5 35 35 H 1.08005 * 119.95908 * 180.24853 * 9 8 7 36 36 H 1.07997 * 126.40015 * 359.95623 * 12 11 10 37 37 H 1.08003 * 126.40715 * 179.97438 * 15 14 13 38 38 H 1.07993 * 119.96279 * 180.02562 * 16 10 9 39 39 H 1.08001 * 120.03715 * 179.97438 * 17 16 10 40 40 H 1.08996 * 113.41116 * 286.80792 * 18 2 1 41 41 H 1.09004 * 113.46865 * 332.74440 * 19 18 2 42 42 H 1.08993 * 113.51976 * 202.30849 * 19 18 2 43 43 H 0.97005 * 119.99413 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.46743 * 87.44096 * 29 20 19 45 45 H 1.08999 * 113.46191 * 217.87327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1615 2.4117 7 6 2.6385 -0.7145 3.5631 8 6 2.9653 -2.0715 3.5039 9 6 3.4287 -2.7162 4.6294 10 6 3.5607 -2.0211 5.8260 11 7 4.0258 -2.6810 6.9689 12 6 4.2157 -2.1453 8.2084 13 7 4.6542 -3.1026 8.9794 14 7 4.7596 -4.1929 8.3069 15 6 4.3884 -3.9914 7.0721 16 6 3.2315 -0.6719 5.8901 17 6 2.7726 -0.0193 4.7674 18 6 2.0401 -0.7213 -1.2492 19 6 1.5899 -0.0847 -2.5714 20 7 2.7724 0.7863 -2.4944 21 6 3.1106 2.0322 -2.9510 22 1 2.3680 2.6506 -3.4334 23 6 4.4080 2.5005 -2.7940 24 7 5.3428 1.7030 -2.3223 25 14 4.8269 4.2623 -3.2520 26 1 5.3584 4.3005 -4.6381 27 1 3.6036 5.0999 -3.1677 28 1 5.8517 4.7872 -2.3142 29 6 3.4341 -0.2723 -1.7170 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6318 1.1527 34 1 2.8583 -2.6133 2.5758 35 1 3.6853 -3.7643 4.5833 36 1 4.0348 -1.1209 8.4984 37 1 4.3718 -4.7253 6.2799 38 1 3.3358 -0.1349 6.8213 39 1 2.5166 1.0288 4.8180 40 1 1.9118 -1.8029 -1.2074 41 1 0.6467 0.4561 -2.4938 42 1 1.6124 -0.7736 -3.4157 43 1 6.2494 2.0301 -2.2129 44 1 3.9433 -1.0113 -2.3356 45 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970590192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:52 Heat of formation + Delta-G solvation = 141.688553 kcal Electronic energy + Delta-G solvation = -28419.951761 eV Core-core repulsion = 24441.476244 eV Total energy + Delta-G solvation = -3978.475517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.68387 -40.52317 -39.22085 -38.15722 -35.31414 -34.82918 -32.37245 -31.97128 -31.12158 -30.82106 -29.60511 -27.65973 -25.47580 -24.65778 -24.16179 -23.88832 -22.73311 -21.81397 -21.46506 -20.42467 -19.41779 -19.00758 -17.48549 -16.79612 -16.63025 -16.37728 -16.22818 -15.67419 -15.23588 -14.93491 -14.85314 -14.67280 -14.43571 -14.08124 -13.87274 -13.67124 -13.49388 -13.18820 -13.07257 -12.58967 -12.13986 -11.98585 -11.88102 -11.71028 -11.57300 -11.43583 -10.96799 -10.95253 -10.85460 -10.75651 -10.39551 -10.02066 -9.96372 -9.86525 -9.81073 -9.68347 -9.27355 -9.09998 -8.87347 -8.75518 -6.91051 -5.80796 -3.11383 -0.01773 0.72589 1.47294 1.84442 2.40685 2.67291 3.15063 3.38252 3.43922 3.45941 3.50636 3.85393 3.97877 4.09270 4.24580 4.42525 4.44980 4.57550 4.70378 4.72657 4.98583 5.09866 5.13405 5.19559 5.26978 5.32526 5.48900 5.49520 5.57478 5.67794 5.75757 5.79114 5.84909 5.96733 6.02585 6.04628 6.23084 6.37104 6.46518 6.47826 6.57505 6.61500 6.78161 7.13008 7.22427 7.49570 7.59554 7.94368 8.17577 8.27242 9.01146 9.68302 10.61379 11.37850 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.002254 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.470805 B =12420.202059 C =13025.536352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 H 0.104 0.896 4 N -0.711 5.711 5 C 0.554 3.446 6 O -0.529 6.529 7 C -0.123 4.123 8 C -0.058 4.058 9 C -0.133 4.133 10 C 0.144 3.856 11 N -0.430 5.430 12 C 0.162 3.838 13 N -0.291 5.291 14 N -0.291 5.291 15 C 0.162 3.838 16 C -0.134 4.134 17 C -0.033 4.033 18 C -0.158 4.158 19 C 0.125 3.875 20 N -0.607 5.607 21 C -0.219 4.219 22 H 0.081 0.919 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.279 1.279 28 H -0.290 1.290 29 C 0.167 3.833 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.224 0.776 37 H 0.224 0.776 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -11.613 15.288 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 H 0.122 0.878 4 N -0.361 5.361 5 C 0.340 3.660 6 O -0.406 6.406 7 C -0.127 4.127 8 C -0.077 4.077 9 C -0.153 4.153 10 C 0.051 3.949 11 N -0.117 5.117 12 C -0.124 4.124 13 N -0.128 5.128 14 N -0.128 5.128 15 C -0.125 4.125 16 C -0.154 4.154 17 C -0.052 4.052 18 C -0.178 4.178 19 C -0.002 4.002 20 N -0.333 5.333 21 C -0.346 4.346 22 H 0.099 0.901 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.204 1.204 28 H -0.216 1.216 29 C 0.041 3.959 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.240 0.760 37 H 0.240 0.760 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.566 -11.216 16.561 21.052 hybrid contribution 0.151 0.972 -1.695 1.960 sum -6.415 -10.244 14.866 19.159 Atomic orbital electron populations 1.22131 0.95712 1.01319 1.02417 1.20667 0.92949 0.98292 0.81414 0.87759 1.46004 1.66588 1.13712 1.09812 1.18035 0.78313 0.86620 0.83040 1.90821 1.49814 1.15139 1.84818 1.20267 1.03098 0.94227 0.95066 1.21243 0.94903 0.93362 0.98232 1.20758 1.02991 1.00717 0.90847 1.17906 0.99405 0.92474 0.85111 1.44314 1.47616 1.10240 1.09530 1.26847 1.02457 1.02446 0.80687 1.74263 1.16762 0.95859 1.25934 1.74256 1.18178 1.18811 1.01570 1.26839 1.01270 0.85177 0.99185 1.20826 1.02444 0.91800 1.00324 1.21211 0.93113 1.00966 0.89949 1.23334 1.02206 0.97534 0.94694 1.22419 0.92772 0.92146 0.92819 1.45729 1.12423 1.12668 1.62513 1.18928 0.94373 0.88160 1.33139 0.90127 1.24807 0.95392 0.98381 1.01729 1.69840 1.01433 1.34366 1.50917 0.86126 0.77994 0.84187 0.77635 1.21662 1.20445 1.21597 1.22033 0.90950 0.88986 0.93966 0.93067 0.92697 0.91119 0.77109 0.84049 0.84304 0.76004 0.75988 0.84290 0.83140 0.91192 0.93756 0.94852 0.93707 0.95380 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.29 37.16 0.35 -1.80 16 2 C 0.17 2.71 2.43 -67.93 -0.16 2.55 16 3 H 0.10 2.21 7.36 -51.93 -0.38 1.83 16 4 N -0.71 -9.18 5.03 -54.80 -0.28 -9.46 16 5 C 0.55 7.81 7.73 -12.41 -0.10 7.71 16 6 O -0.53 -9.69 16.00 5.30 0.08 -9.60 16 7 C -0.12 -1.26 5.87 -104.95 -0.62 -1.88 16 8 C -0.06 -0.42 9.53 -39.22 -0.37 -0.80 16 9 C -0.13 -0.83 9.46 -39.47 -0.37 -1.20 16 10 C 0.14 1.03 6.65 -83.58 -0.56 0.48 16 11 N -0.43 -3.29 2.99 -63.17 -0.19 -3.47 16 12 C 0.16 1.30 12.06 -89.16 -1.08 0.22 16 13 N -0.29 -3.33 12.19 29.85 0.36 -2.96 16 14 N -0.29 -3.31 12.19 29.85 0.36 -2.94 16 15 C 0.16 1.26 12.06 -89.16 -1.08 0.19 16 16 C -0.13 -0.95 9.46 -39.47 -0.37 -1.32 16 17 C -0.03 -0.30 9.58 -39.22 -0.38 -0.68 16 18 C -0.16 -2.59 3.73 -89.97 -0.34 -2.92 16 19 C 0.13 2.38 8.08 -8.51 -0.07 2.31 16 20 N -0.61 -15.01 3.57 -184.62 -0.66 -15.67 16 21 C -0.22 -6.06 10.73 -15.06 -0.16 -6.22 16 22 H 0.08 2.16 7.84 -52.48 -0.41 1.75 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 24 N -0.92 -27.16 11.81 55.49 0.66 -26.50 16 25 Si 0.91 22.24 29.56 -169.99 -5.02 17.21 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 C 0.17 3.68 6.77 -8.38 -0.06 3.62 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.98 6.50 -51.92 -0.34 0.65 16 33 H 0.39 3.74 6.63 -40.82 -0.27 3.47 16 34 H 0.14 0.72 6.39 -52.49 -0.34 0.38 16 35 H 0.14 0.48 6.84 -52.48 -0.36 0.12 16 36 H 0.22 0.87 7.17 -52.49 -0.38 0.50 16 37 H 0.22 0.79 7.17 -52.48 -0.38 0.42 16 38 H 0.14 0.62 6.84 -52.49 -0.36 0.26 16 39 H 0.15 1.42 7.64 -52.49 -0.40 1.02 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.79 6.43 -51.93 -0.33 0.46 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.52 7.56 -51.93 -0.39 1.13 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -36.98 377.00 -10.04 -47.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.58 Total: 0.71 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -5.45 Total: -0.01 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.26 Total: -61.01 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.98 -10.04 -47.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970590192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.702 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds