Wall clock time and date at job start Wed Apr 1 2020 00:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21579 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.47668 * 120.00354 * 179.97438 * 5 4 2 8 8 C 1.39703 * 120.07958 * 359.72017 * 7 5 4 9 9 C 1.37735 * 119.91844 * 179.73925 * 8 7 5 10 10 C 1.39024 * 120.08070 * 0.53935 * 9 8 7 11 11 N 1.39926 * 119.91802 * 179.69702 * 10 9 8 12 12 C 1.36357 * 127.11460 * 179.70837 * 11 10 9 13 13 N 1.30504 * 107.19691 * 179.83433 * 12 11 10 14 14 N 1.28538 * 109.91670 * 0.43691 * 13 12 11 15 15 C 1.30498 * 109.92249 * 359.72043 * 14 13 12 16 16 C 1.39024 * 120.16298 * 359.71200 * 10 9 8 17 17 C 1.37734 * 120.07697 * 0.03056 * 16 10 9 18 18 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 19 19 C 1.53496 * 114.20179 * 60.00300 * 18 2 1 20 20 N 1.47070 * 87.98352 * 87.52002 * 19 18 2 21 21 C 1.36935 * 136.05550 * 207.07944 * 20 19 18 22 22 H 1.08005 * 120.00172 * 6.50069 * 21 20 19 23 23 C 1.38815 * 119.99990 * 186.49806 * 21 20 19 24 24 N 1.31619 * 119.99663 * 6.42579 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 186.42252 * 23 21 20 26 26 H 1.48495 * 109.47340 * 265.02201 * 25 23 21 27 27 H 1.48498 * 109.46951 * 25.02385 * 25 23 21 28 28 H 1.48498 * 109.46744 * 145.01993 * 25 23 21 29 29 C 1.47064 * 87.88277 * 27.34197 * 20 19 18 30 30 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 32 32 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 33 33 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 34 34 H 1.08001 * 120.04070 * 359.97438 * 8 7 5 35 35 H 1.08005 * 119.95908 * 180.24853 * 9 8 7 36 36 H 1.07997 * 126.40015 * 359.95623 * 12 11 10 37 37 H 1.08003 * 126.40715 * 179.97438 * 15 14 13 38 38 H 1.07993 * 119.96279 * 180.02562 * 16 10 9 39 39 H 1.08001 * 120.03715 * 179.97438 * 17 16 10 40 40 H 1.08996 * 113.41116 * 286.80792 * 18 2 1 41 41 H 1.09004 * 113.46865 * 332.74440 * 19 18 2 42 42 H 1.08993 * 113.51976 * 202.30849 * 19 18 2 43 43 H 0.97005 * 119.99413 * 179.97438 * 24 23 21 44 44 H 1.09000 * 113.46743 * 87.44096 * 29 20 19 45 45 H 1.08999 * 113.46191 * 217.87327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1615 2.4117 7 6 2.6385 -0.7145 3.5631 8 6 2.9653 -2.0715 3.5039 9 6 3.4287 -2.7162 4.6294 10 6 3.5607 -2.0211 5.8260 11 7 4.0258 -2.6810 6.9689 12 6 4.2157 -2.1453 8.2084 13 7 4.6542 -3.1026 8.9794 14 7 4.7596 -4.1929 8.3069 15 6 4.3884 -3.9914 7.0721 16 6 3.2315 -0.6719 5.8901 17 6 2.7726 -0.0193 4.7674 18 6 2.0401 -0.7213 -1.2492 19 6 1.5899 -0.0847 -2.5714 20 7 2.7724 0.7863 -2.4944 21 6 3.1106 2.0322 -2.9510 22 1 2.3680 2.6506 -3.4334 23 6 4.4080 2.5005 -2.7940 24 7 5.3428 1.7030 -2.3223 25 14 4.8269 4.2623 -3.2520 26 1 5.3584 4.3005 -4.6381 27 1 3.6036 5.0999 -3.1677 28 1 5.8517 4.7872 -2.3142 29 6 3.4341 -0.2723 -1.7170 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6318 1.1527 34 1 2.8583 -2.6133 2.5758 35 1 3.6853 -3.7643 4.5833 36 1 4.0348 -1.1209 8.4984 37 1 4.3718 -4.7253 6.2799 38 1 3.3358 -0.1349 6.8213 39 1 2.5166 1.0288 4.8180 40 1 1.9118 -1.8029 -1.2074 41 1 0.6467 0.4561 -2.4938 42 1 1.6124 -0.7736 -3.4157 43 1 6.2494 2.0301 -2.2129 44 1 3.9433 -1.0113 -2.3356 45 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970590192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:51 Heat of formation + Delta-G solvation = 118.788264 kcal Electronic energy + Delta-G solvation = -28420.944792 eV Core-core repulsion = 24441.476244 eV Total energy + Delta-G solvation = -3979.468548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.30292 -41.47244 -40.34576 -39.40227 -36.15856 -35.99678 -34.23592 -32.70548 -32.10892 -31.47592 -30.54438 -29.46609 -26.63814 -25.87747 -25.48412 -24.76623 -23.78062 -22.89018 -22.16551 -21.46431 -20.56921 -19.78975 -18.82698 -18.39974 -17.58190 -17.25381 -16.90251 -16.83100 -16.46494 -16.06709 -15.90531 -15.74299 -15.37808 -15.22000 -14.87047 -14.66286 -14.46160 -14.38297 -14.17514 -13.97373 -13.47875 -13.30152 -13.17208 -12.82233 -12.66884 -12.53994 -12.37185 -12.27970 -12.26343 -12.03435 -11.77465 -11.58416 -11.49319 -11.15464 -10.92640 -10.82681 -10.62287 -10.22864 -10.12874 -9.63894 -8.89452 -7.93965 -5.22980 -0.66138 0.18031 0.84974 1.28120 1.41378 1.43575 1.52054 1.75963 1.83867 2.12220 2.46013 2.73130 3.30486 3.32469 3.48061 3.52313 3.58366 3.61291 3.72971 3.80961 3.90182 3.98747 4.11268 4.19481 4.42578 4.47814 4.50804 4.53876 4.71054 4.78522 4.81494 4.82639 4.89670 4.93794 4.97426 5.02880 5.14430 5.21343 5.24801 5.28041 5.33008 5.43248 5.50574 5.52177 5.71493 5.93303 5.93921 6.57876 6.91225 7.25135 7.54444 7.60660 8.62212 9.25003 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.002254 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.470805 B =12420.202059 C =13025.536352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.042 0.958 4 N -0.700 5.700 5 C 0.549 3.451 6 O -0.585 6.585 7 C -0.145 4.145 8 C -0.050 4.050 9 C -0.124 4.124 10 C 0.146 3.854 11 N -0.432 5.432 12 C 0.168 3.832 13 N -0.336 5.336 14 N -0.338 5.338 15 C 0.174 3.826 16 C -0.130 4.130 17 C -0.047 4.047 18 C -0.118 4.118 19 C 0.123 3.877 20 N -0.643 5.643 21 C -0.223 4.223 22 H 0.082 0.918 23 C -0.069 4.069 24 N -0.952 5.952 25 Si 0.971 3.029 26 H -0.284 1.284 27 H -0.269 1.269 28 H -0.297 1.297 29 C 0.162 3.838 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.414 0.586 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.256 0.744 37 H 0.263 0.737 38 H 0.163 0.837 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.246 0.754 44 H 0.022 0.978 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 -14.066 15.368 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.071 3.929 3 H 0.061 0.939 4 N -0.351 5.351 5 C 0.337 3.663 6 O -0.466 6.466 7 C -0.149 4.149 8 C -0.069 4.069 9 C -0.144 4.144 10 C 0.053 3.947 11 N -0.119 5.119 12 C -0.119 4.119 13 N -0.172 5.172 14 N -0.173 5.173 15 C -0.113 4.113 16 C -0.149 4.149 17 C -0.066 4.066 18 C -0.138 4.138 19 C -0.002 4.002 20 N -0.369 5.369 21 C -0.352 4.352 22 H 0.100 0.900 23 C -0.262 4.262 24 N -0.601 5.601 25 Si 0.800 3.200 26 H -0.211 1.211 27 H -0.194 1.194 28 H -0.224 1.224 29 C 0.036 3.964 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.253 0.747 34 H 0.185 0.815 35 H 0.193 0.807 36 H 0.272 0.728 37 H 0.279 0.721 38 H 0.181 0.819 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.885 -13.734 16.643 22.973 hybrid contribution 0.514 1.688 -1.692 2.445 sum -7.371 -12.045 14.950 20.565 Atomic orbital electron populations 1.22027 0.93355 1.03412 1.01722 1.20345 0.94603 0.95428 0.82516 0.93917 1.45796 1.66163 1.14512 1.08649 1.18677 0.77245 0.86136 0.84196 1.90787 1.52332 1.17680 1.85777 1.20056 1.05550 0.95689 0.93572 1.21463 0.93784 0.91866 0.99764 1.21130 1.01330 1.02256 0.89664 1.18050 0.98851 0.92469 0.85332 1.44384 1.47667 1.10311 1.09492 1.27492 1.00701 1.03204 0.80469 1.74180 1.18756 0.96795 1.27462 1.74169 1.20316 1.19534 1.03314 1.27595 0.99044 0.85681 0.99013 1.20980 1.01418 0.92090 1.00436 1.21179 0.94149 1.00662 0.90635 1.23091 0.96891 1.00292 0.93499 1.22651 0.91316 0.91595 0.94660 1.46090 1.15002 1.12910 1.62936 1.19297 0.94343 0.89976 1.31538 0.89992 1.25586 0.95652 1.02053 1.02909 1.70007 1.01289 1.35829 1.52972 0.85165 0.77642 0.80111 0.77128 1.21082 1.19387 1.22406 1.22032 0.93329 0.88317 0.92681 0.89417 0.93792 0.91512 0.74716 0.81521 0.80726 0.72846 0.72098 0.81943 0.84574 0.85821 0.92541 0.92966 0.94540 0.96071 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.29 71.98 0.67 -3.06 16 2 C 0.18 5.49 2.43 44.99 0.11 5.60 16 3 H 0.04 1.90 7.36 -2.39 -0.02 1.88 16 4 N -0.70 -17.27 5.03 -445.56 -2.24 -19.51 16 5 C 0.55 15.69 7.73 86.73 0.67 16.37 16 6 O -0.58 -22.80 16.00 -3.96 -0.06 -22.86 16 7 C -0.14 -2.85 5.87 -20.08 -0.12 -2.97 16 8 C -0.05 -0.56 9.53 22.50 0.21 -0.35 16 9 C -0.12 -1.02 9.46 22.34 0.21 -0.81 16 10 C 0.15 1.62 6.65 38.23 0.25 1.88 16 11 N -0.43 -5.30 2.99 -353.76 -1.06 -6.36 16 12 C 0.17 2.35 12.06 179.84 2.17 4.52 16 13 N -0.34 -7.36 12.19 -59.46 -0.73 -8.09 16 14 N -0.34 -7.23 12.19 -59.46 -0.73 -7.95 16 15 C 0.17 2.20 12.06 179.84 2.17 4.37 16 16 C -0.13 -1.57 9.46 22.34 0.21 -1.36 16 17 C -0.05 -0.84 9.58 22.50 0.22 -0.63 16 18 C -0.12 -3.62 3.73 -10.37 -0.04 -3.66 16 19 C 0.12 4.45 8.08 83.17 0.67 5.12 16 20 N -0.64 -32.13 3.57 -738.00 -2.63 -34.76 16 21 C -0.22 -12.62 10.73 84.03 0.90 -11.71 16 22 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 24 N -0.95 -58.42 11.81 21.65 0.26 -58.16 16 25 Si 0.97 47.01 29.56 68.60 2.03 49.04 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 C 0.16 7.22 6.77 83.26 0.56 7.78 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.74 6.50 -2.38 -0.02 1.72 16 33 H 0.41 6.56 6.63 -92.71 -0.61 5.95 16 34 H 0.17 0.94 6.39 -2.91 -0.02 0.92 16 35 H 0.18 0.17 6.84 -2.91 -0.02 0.15 16 36 H 0.26 1.34 7.17 -2.91 -0.02 1.32 16 37 H 0.26 0.66 7.17 -2.91 -0.02 0.64 16 38 H 0.16 1.06 6.84 -2.91 -0.02 1.04 16 39 H 0.14 2.78 7.64 -2.91 -0.02 2.75 16 40 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.06 1.91 6.43 -2.38 -0.02 1.90 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 44 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.02 1.11 7.56 -2.39 -0.02 1.09 16 Total: -1.00 -88.18 377.00 4.61 -83.58 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.43 Total: 7.54 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 9.34 Total: 17.54 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -7.13 Total: -134.83 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -88.18 4.61 -83.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970590192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.366 kcal (2) G-P(sol) polarization free energy of solvation -88.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds