Wall clock time and date at job start Wed Apr 1 2020 00:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47674 * 119.99692 * 179.97438 * 5 4 2 8 8 C 1.39701 * 120.08198 * 359.72312 * 7 5 4 9 9 C 1.37733 * 119.91716 * 179.79151 * 8 7 5 10 10 C 1.39027 * 120.08241 * 0.46211 * 9 8 7 11 11 N 1.39922 * 119.91859 * 179.76475 * 10 9 8 12 12 C 1.36360 * 127.11447 * 179.70433 * 11 10 9 13 13 N 1.30508 * 107.19386 * 179.87458 * 12 11 10 14 14 N 1.28534 * 109.91799 * 0.40608 * 13 12 11 15 15 C 1.30502 * 109.92328 * 359.74050 * 14 13 12 16 16 C 1.39021 * 120.16069 * 359.78787 * 10 9 8 17 17 C 1.37742 * 120.08125 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08004 * 120.04181 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.95766 * 180.22915 * 9 8 7 36 36 H 1.07994 * 126.40023 * 359.97438 * 12 11 10 37 37 H 1.08003 * 126.40203 * 179.97438 * 15 14 13 38 38 H 1.08002 * 119.96308 * 179.97438 * 16 10 9 39 39 H 1.08001 * 120.04003 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7146 -3.5627 8 6 2.9783 -2.0685 -3.5002 9 6 3.4335 -2.7155 -4.6278 10 6 3.5652 -2.0205 -5.8246 11 7 4.0326 -2.6800 -6.9668 12 6 4.2121 -2.1471 -8.2090 13 7 4.6635 -3.1012 -8.9766 14 7 4.7697 -4.1912 -8.3037 15 6 4.3971 -3.9899 -7.0693 16 6 3.2342 -0.6718 -5.8893 17 6 2.7738 -0.0194 -4.7670 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8805 -2.6080 -2.5697 35 1 3.6919 -3.7631 -4.5811 36 1 4.0185 -1.1259 -8.5024 37 1 4.3802 -4.7238 -6.2771 38 1 3.3382 -0.1349 -6.8206 39 1 2.5172 1.0285 -4.8178 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970590194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:54 Heat of formation + Delta-G solvation = 148.839095 kcal Electronic energy + Delta-G solvation = -28531.902416 eV Core-core repulsion = 24553.736970 eV Total energy + Delta-G solvation = -3978.165446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68725 -40.54313 -39.33427 -38.29609 -35.31751 -34.64302 -32.33540 -31.98482 -31.00643 -30.79623 -29.22161 -27.74001 -25.31648 -24.78394 -24.26294 -24.03742 -22.71955 -21.72746 -21.41213 -20.33676 -19.38325 -18.85143 -17.51202 -16.85438 -16.63365 -16.24803 -16.17151 -15.51195 -15.25785 -15.03255 -14.83387 -14.72540 -14.62064 -14.13095 -13.90956 -13.77474 -13.52539 -13.21798 -12.67795 -12.41382 -11.99213 -11.88775 -11.70756 -11.60089 -11.26476 -11.14259 -11.04268 -10.95374 -10.84280 -10.61970 -10.40866 -10.01864 -9.96627 -9.87791 -9.76098 -9.69021 -9.26303 -9.09830 -8.81830 -8.74380 -6.89953 -5.84664 -3.15835 -0.02734 0.71978 1.46596 1.84033 2.40435 2.65701 3.17862 3.33948 3.40493 3.42039 3.48711 3.85250 3.97893 4.08936 4.24383 4.39821 4.43309 4.58226 4.70632 4.72457 4.99121 5.11131 5.20216 5.22258 5.29084 5.32866 5.47912 5.49275 5.57983 5.75163 5.83342 5.86430 6.00548 6.02959 6.23886 6.33357 6.40562 6.46529 6.55110 6.61802 6.69640 6.95543 7.14194 7.17988 7.42259 7.52819 7.64721 7.90161 8.17341 8.25690 8.97086 9.63692 10.56605 11.32636 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.002152 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.585207 B =13005.933485 C =13545.579599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.078 0.922 4 N -0.709 5.709 5 C 0.553 3.447 6 O -0.538 6.538 7 C -0.125 4.125 8 C -0.057 4.057 9 C -0.133 4.133 10 C 0.145 3.855 11 N -0.430 5.430 12 C 0.161 3.839 13 N -0.291 5.291 14 N -0.291 5.291 15 C 0.162 3.838 16 C -0.135 4.135 17 C -0.034 4.034 18 C -0.162 4.162 19 C 0.127 3.873 20 N -0.604 5.604 21 C -0.213 4.213 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.157 3.843 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.397 0.603 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.223 0.777 37 H 0.224 0.776 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.461 1.493 -14.234 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.096 0.904 4 N -0.359 5.359 5 C 0.340 3.660 6 O -0.416 6.416 7 C -0.128 4.128 8 C -0.076 4.076 9 C -0.152 4.152 10 C 0.051 3.949 11 N -0.117 5.117 12 C -0.125 4.125 13 N -0.128 5.128 14 N -0.128 5.128 15 C -0.124 4.124 16 C -0.155 4.155 17 C -0.053 4.053 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.340 4.340 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 C 0.031 3.969 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.240 0.760 37 H 0.241 0.759 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.424 1.482 -15.494 19.915 hybrid contribution -1.294 -0.025 1.750 2.177 sum 11.130 1.457 -13.743 17.745 Atomic orbital electron populations 1.22175 0.92822 1.04428 1.01177 1.20632 0.95784 0.95191 0.81143 0.90367 1.46120 1.65873 1.14004 1.09903 1.18040 0.78336 0.86637 0.83031 1.90783 1.50539 1.15490 1.84831 1.20277 1.03046 0.94344 0.95172 1.21295 0.94555 0.93330 0.98464 1.20782 1.02969 1.00704 0.90792 1.17911 0.99369 0.92459 0.85125 1.44315 1.47607 1.10387 1.09407 1.26837 1.02521 1.02509 0.80652 1.74261 1.16622 0.95946 1.25982 1.74260 1.18330 1.18670 1.01542 1.26860 1.01250 0.85103 0.99180 1.20818 1.02581 0.91847 1.00261 1.21189 0.93226 1.00936 0.89985 1.23387 0.98374 1.01669 0.94818 1.22338 0.88980 0.95780 0.92926 1.45673 1.04259 1.20010 1.63072 1.18917 0.83104 1.03680 1.28278 0.90188 1.24719 0.98114 0.96499 1.00827 1.69799 1.33984 1.09520 1.43254 0.86112 0.84673 0.77295 0.78100 1.20481 1.21719 1.21850 1.22210 0.89389 0.90652 0.94601 0.89450 0.95327 0.90418 0.76762 0.83878 0.84239 0.76024 0.75946 0.84329 0.83221 0.91215 0.93978 0.94714 0.93788 0.95930 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.07 37.16 0.30 -2.60 16 2 C 0.18 2.85 2.76 -67.93 -0.19 2.67 16 3 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 4 N -0.71 -9.44 5.03 -54.81 -0.28 -9.72 16 5 C 0.55 7.53 7.73 -12.41 -0.10 7.43 16 6 O -0.54 -9.20 16.00 5.30 0.08 -9.12 16 7 C -0.12 -1.25 5.88 -104.95 -0.62 -1.86 16 8 C -0.06 -0.43 9.53 -39.22 -0.37 -0.81 16 9 C -0.13 -0.85 9.46 -39.47 -0.37 -1.22 16 10 C 0.14 1.02 6.65 -83.58 -0.56 0.46 16 11 N -0.43 -3.25 2.99 -63.17 -0.19 -3.44 16 12 C 0.16 1.26 12.06 -89.15 -1.08 0.19 16 13 N -0.29 -3.30 12.19 29.85 0.36 -2.93 16 14 N -0.29 -3.31 12.19 29.85 0.36 -2.95 16 15 C 0.16 1.28 12.06 -89.16 -1.08 0.21 16 16 C -0.14 -0.90 9.46 -39.47 -0.37 -1.27 16 17 C -0.03 -0.29 9.58 -39.22 -0.38 -0.67 16 18 C -0.16 -2.65 4.24 -89.97 -0.38 -3.04 16 19 C 0.13 2.36 7.85 -8.51 -0.07 2.29 16 20 N -0.60 -13.92 2.18 -184.61 -0.40 -14.32 16 21 C -0.21 -5.50 9.60 -15.06 -0.14 -5.65 16 22 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -25.19 11.50 55.49 0.64 -24.55 16 25 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.16 3.24 6.41 -8.37 -0.05 3.18 16 30 H 0.09 1.90 5.95 -51.93 -0.31 1.59 16 31 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.08 1.72 6.33 -51.93 -0.33 1.40 16 33 H 0.40 4.33 6.63 -40.82 -0.27 4.06 16 34 H 0.14 0.85 6.40 -52.48 -0.34 0.52 16 35 H 0.14 0.54 6.84 -52.48 -0.36 0.18 16 36 H 0.22 0.81 7.17 -52.49 -0.38 0.43 16 37 H 0.22 0.84 7.17 -52.48 -0.38 0.47 16 38 H 0.14 0.55 6.84 -52.49 -0.36 0.20 16 39 H 0.15 1.28 7.64 -52.49 -0.40 0.88 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.72 5.72 -51.93 -0.30 1.42 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -33.82 370.91 -9.86 -43.68 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.46 Total: 2.43 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -5.55 Total: -0.91 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.50 Total: -57.91 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.82 -9.86 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970590194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.523 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds