Wall clock time and date at job start Wed Apr 1 2020 00:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47674 * 119.99692 * 179.97438 * 5 4 2 8 8 C 1.39701 * 120.08198 * 359.72312 * 7 5 4 9 9 C 1.37733 * 119.91716 * 179.79151 * 8 7 5 10 10 C 1.39027 * 120.08241 * 0.46211 * 9 8 7 11 11 N 1.39922 * 119.91859 * 179.76475 * 10 9 8 12 12 C 1.36360 * 127.11447 * 179.70433 * 11 10 9 13 13 N 1.30508 * 107.19386 * 179.87458 * 12 11 10 14 14 N 1.28534 * 109.91799 * 0.40608 * 13 12 11 15 15 C 1.30502 * 109.92328 * 359.74050 * 14 13 12 16 16 C 1.39021 * 120.16069 * 359.78787 * 10 9 8 17 17 C 1.37742 * 120.08125 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08004 * 120.04181 * 359.97438 * 8 7 5 35 35 H 1.08003 * 119.95766 * 180.22915 * 9 8 7 36 36 H 1.07994 * 126.40023 * 359.97438 * 12 11 10 37 37 H 1.08003 * 126.40203 * 179.97438 * 15 14 13 38 38 H 1.08002 * 119.96308 * 179.97438 * 16 10 9 39 39 H 1.08001 * 120.04003 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7146 -3.5627 8 6 2.9783 -2.0685 -3.5002 9 6 3.4335 -2.7155 -4.6278 10 6 3.5652 -2.0205 -5.8246 11 7 4.0326 -2.6800 -6.9668 12 6 4.2121 -2.1471 -8.2090 13 7 4.6635 -3.1012 -8.9766 14 7 4.7697 -4.1912 -8.3037 15 6 4.3971 -3.9899 -7.0693 16 6 3.2342 -0.6718 -5.8893 17 6 2.7738 -0.0194 -4.7670 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1525 34 1 2.8805 -2.6080 -2.5697 35 1 3.6919 -3.7631 -4.5811 36 1 4.0185 -1.1259 -8.5024 37 1 4.3802 -4.7238 -6.2771 38 1 3.3382 -0.1349 -6.8206 39 1 2.5172 1.0285 -4.8178 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970590194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:54 Heat of formation + Delta-G solvation = 130.488173 kcal Electronic energy + Delta-G solvation = -28532.698172 eV Core-core repulsion = 24553.736970 eV Total energy + Delta-G solvation = -3978.961202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29871 -41.51218 -40.48366 -39.42292 -35.99499 -35.93289 -34.15640 -32.64413 -31.93242 -31.46246 -30.34708 -29.50777 -26.41301 -26.23449 -25.57127 -24.75187 -23.68863 -22.82661 -22.15689 -21.36631 -20.36633 -19.74854 -18.79975 -18.41335 -17.25637 -17.24533 -16.84188 -16.81795 -16.49966 -16.19712 -16.01328 -15.64533 -15.55549 -15.24860 -14.94210 -14.52410 -14.46106 -14.25529 -14.06791 -13.76626 -13.48916 -13.00466 -12.91586 -12.77055 -12.65796 -12.53155 -12.35863 -12.27043 -12.24776 -12.01020 -11.68793 -11.57856 -11.46695 -11.13458 -10.83015 -10.72468 -10.61951 -10.21797 -10.09883 -9.62992 -8.75569 -7.84392 -5.13376 -0.65379 0.19084 0.85437 1.28786 1.45777 1.48120 1.55524 1.76330 1.84537 2.13300 2.50528 2.73856 3.33253 3.38143 3.49572 3.56736 3.61328 3.66166 3.76067 3.80712 3.92931 4.01334 4.12313 4.19993 4.40711 4.48622 4.53032 4.57911 4.75214 4.82916 4.88279 4.91119 4.94385 4.99163 5.06123 5.12520 5.14302 5.19720 5.26954 5.31835 5.45008 5.54147 5.61354 5.68808 5.82164 5.93921 6.02598 6.58221 7.00196 7.21704 7.54869 7.68296 8.69123 9.32485 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.002152 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.585207 B =13005.933485 C =13545.579599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H 0.078 0.922 4 N -0.703 5.703 5 C 0.553 3.447 6 O -0.580 6.580 7 C -0.145 4.145 8 C -0.053 4.053 9 C -0.127 4.127 10 C 0.146 3.854 11 N -0.432 5.432 12 C 0.170 3.830 13 N -0.337 5.337 14 N -0.337 5.337 15 C 0.172 3.828 16 C -0.128 4.128 17 C -0.041 4.041 18 C -0.128 4.128 19 C 0.123 3.877 20 N -0.632 5.632 21 C -0.211 4.211 22 H 0.077 0.923 23 C -0.057 4.057 24 N -0.942 5.942 25 Si 0.960 3.040 26 H -0.271 1.271 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.156 3.844 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.411 0.589 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.259 0.741 37 H 0.260 0.740 38 H 0.166 0.834 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.245 0.755 44 H 0.018 0.982 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 1.388 -14.692 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.096 0.904 4 N -0.354 5.354 5 C 0.342 3.658 6 O -0.461 6.461 7 C -0.149 4.149 8 C -0.072 4.072 9 C -0.146 4.146 10 C 0.053 3.947 11 N -0.119 5.119 12 C -0.117 4.117 13 N -0.173 5.173 14 N -0.173 5.173 15 C -0.115 4.115 16 C -0.148 4.148 17 C -0.061 4.061 18 C -0.148 4.148 19 C -0.003 4.003 20 N -0.358 5.358 21 C -0.340 4.340 22 H 0.094 0.906 23 C -0.251 4.251 24 N -0.591 5.591 25 Si 0.791 3.209 26 H -0.195 1.195 27 H -0.224 1.224 28 H -0.224 1.224 29 C 0.031 3.969 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.248 0.752 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.274 0.726 37 H 0.276 0.724 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.059 1.367 -15.960 21.313 hybrid contribution -1.750 0.050 1.860 2.554 sum 12.309 1.418 -14.100 18.770 Atomic orbital electron populations 1.21934 0.95559 1.01884 0.99533 1.20314 0.93336 0.95671 0.82553 0.90387 1.45920 1.65684 1.14610 1.09141 1.18584 0.77232 0.86226 0.83763 1.90758 1.52409 1.17417 1.85511 1.20056 1.05364 0.95471 0.93968 1.21433 0.93917 0.92248 0.99651 1.21087 1.01656 1.02040 0.89862 1.18051 0.98873 0.92614 0.85146 1.44386 1.47636 1.10381 1.09453 1.27527 1.00563 1.03296 0.80306 1.74176 1.18697 0.96869 1.27509 1.74174 1.20425 1.19478 1.03235 1.27556 0.99260 0.85716 0.98983 1.21020 1.01296 0.91876 1.00597 1.21204 0.93752 1.00876 0.90269 1.23130 0.99731 0.98402 0.93520 1.22548 0.87388 0.95738 0.94643 1.45935 1.04672 1.21815 1.63355 1.19129 0.84822 1.03090 1.26912 0.90562 1.25320 1.01004 0.96814 1.01946 1.69935 1.34430 1.09988 1.44773 0.85268 0.81245 0.77213 0.77204 1.19534 1.22409 1.22365 1.22188 0.89584 0.91455 0.93693 0.91962 0.96005 0.93232 0.75161 0.82355 0.81276 0.72570 0.72411 0.81642 0.83844 0.87106 0.93466 0.93021 0.94591 0.96392 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.07 71.98 0.58 -4.64 16 2 C 0.19 5.85 2.76 44.99 0.12 5.97 16 3 H 0.08 2.55 7.58 -2.39 -0.02 2.53 16 4 N -0.70 -17.73 5.03 -445.58 -2.24 -19.97 16 5 C 0.55 14.56 7.73 86.74 0.67 15.23 16 6 O -0.58 -19.82 16.00 -3.93 -0.06 -19.89 16 7 C -0.14 -2.65 5.88 -20.08 -0.12 -2.77 16 8 C -0.05 -0.65 9.53 22.50 0.21 -0.44 16 9 C -0.13 -1.14 9.46 22.34 0.21 -0.93 16 10 C 0.15 1.56 6.65 38.23 0.25 1.81 16 11 N -0.43 -5.20 2.99 -353.76 -1.06 -6.26 16 12 C 0.17 2.25 12.06 179.84 2.17 4.42 16 13 N -0.34 -7.25 12.19 -59.46 -0.73 -7.97 16 14 N -0.34 -7.27 12.19 -59.46 -0.73 -7.99 16 15 C 0.17 2.25 12.06 179.84 2.17 4.42 16 16 C -0.13 -1.33 9.46 22.34 0.21 -1.12 16 17 C -0.04 -0.65 9.58 22.51 0.22 -0.43 16 18 C -0.13 -3.92 4.24 -10.37 -0.04 -3.96 16 19 C 0.12 4.36 7.85 83.18 0.65 5.02 16 20 N -0.63 -29.02 2.18 -737.98 -1.61 -30.63 16 21 C -0.21 -11.03 9.60 84.03 0.81 -10.23 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 24 N -0.94 -52.75 11.50 21.65 0.25 -52.51 16 25 Si 0.96 44.42 29.55 68.60 2.03 46.45 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 29 C 0.16 6.34 6.41 83.27 0.53 6.87 16 30 H 0.06 2.77 5.95 -2.39 -0.01 2.75 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.05 2.25 6.33 -2.39 -0.02 2.24 16 33 H 0.41 8.09 6.63 -92.71 -0.61 7.48 16 34 H 0.16 1.37 6.40 -2.91 -0.02 1.35 16 35 H 0.17 0.48 6.84 -2.91 -0.02 0.46 16 36 H 0.26 1.01 7.17 -2.91 -0.02 0.99 16 37 H 0.26 0.96 7.17 -2.91 -0.02 0.93 16 38 H 0.17 0.72 6.84 -2.91 -0.02 0.70 16 39 H 0.14 2.37 7.64 -2.91 -0.02 2.35 16 40 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.24 13.54 8.31 -92.71 -0.77 12.77 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 2.43 5.72 -2.39 -0.01 2.42 16 Total: -1.00 -76.77 370.91 5.41 -71.36 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.43 Total: 10.79 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 9.12 Total: 16.61 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -6.11 Total: -125.33 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.77 5.41 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970590194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.850 kcal (2) G-P(sol) polarization free energy of solvation -76.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds