Wall clock time and date at job start Wed Apr 1 2020 00:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21616 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.47295 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.37959 * 126.80785 * 359.68319 * 7 5 4 9 9 N 1.34155 * 107.88628 * 179.87016 * 8 7 5 10 10 H 0.96999 * 125.16551 * 180.14562 * 9 8 7 11 11 N 1.39768 * 109.67309 * 0.40789 * 9 8 7 12 12 C 1.31365 * 109.08161 * 359.74115 * 11 9 8 13 13 C 1.48299 * 126.51195 * 179.97438 * 12 11 9 14 14 C 1.39798 * 120.54293 * 325.00516 * 13 12 11 15 15 C 1.38405 * 118.30966 * 179.97438 * 14 13 12 16 16 C 1.38317 * 119.28317 * 359.97438 * 15 14 13 17 17 N 1.31889 * 121.04284 * 359.97438 * 16 15 14 18 18 C 1.31739 * 121.85391 * 359.72831 * 17 16 15 19 19 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 20 20 C 1.53497 * 114.20590 * 174.71570 * 19 2 1 21 21 N 1.47063 * 87.98756 * 220.34354 * 20 19 2 22 22 C 1.36933 * 136.06152 * 207.08176 * 21 20 19 23 23 H 1.08004 * 119.99948 * 6.49730 * 22 21 20 24 24 C 1.38805 * 120.00422 * 186.49224 * 22 21 20 25 25 N 1.31621 * 119.99799 * 6.27156 * 24 22 21 26 26 Si 1.86798 * 120.00357 * 186.27268 * 24 22 21 27 27 H 1.48511 * 109.47134 * 265.01290 * 26 24 22 28 28 H 1.48498 * 109.47125 * 25.00956 * 26 24 22 29 29 H 1.48499 * 109.47537 * 145.01308 * 26 24 22 30 30 C 1.47070 * 87.88273 * 27.34326 * 21 20 19 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 34 34 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 35 35 H 1.08005 * 126.05555 * 359.97438 * 8 7 5 36 36 H 1.08001 * 120.84627 * 359.95228 * 14 13 12 37 37 H 1.07999 * 120.36010 * 180.02562 * 15 14 13 38 38 H 1.08006 * 119.47907 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.70634 * 180.26427 * 18 17 16 40 40 H 1.08994 * 113.41243 * 307.91400 * 19 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 20 19 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 20 19 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 25 24 22 44 44 H 1.09006 * 113.46411 * 87.43633 * 30 21 20 45 45 H 1.09003 * 113.46855 * 217.87664 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8582 1.1617 2.4117 7 6 2.6376 -0.7129 3.5598 8 6 2.9978 -2.0410 3.6582 9 7 3.3897 -2.2692 4.9208 10 1 3.6975 -3.1223 5.2647 11 7 3.2815 -1.0923 5.6670 12 6 2.8340 -0.1315 4.8911 13 6 2.5757 1.2742 5.2869 14 6 2.0941 1.5755 6.5643 15 6 1.8698 2.9031 6.8849 16 6 2.1273 3.8801 5.9403 17 7 2.5824 3.5654 4.7431 18 6 2.8165 2.3168 4.3943 19 6 2.0399 -0.7212 -1.2494 20 6 3.5641 -0.6739 -1.4253 21 7 3.3395 -0.4640 -2.8634 22 6 4.0309 -0.7208 -4.0172 23 1 4.9487 -1.2890 -3.9816 24 6 3.5522 -0.2509 -5.2324 25 7 2.5037 0.5440 -5.2637 26 14 4.3961 -0.7468 -6.8234 27 1 5.3783 0.2982 -7.2094 28 1 5.1001 -2.0397 -6.6283 29 1 3.3812 -0.8930 -7.8975 30 6 2.0485 0.1492 -2.5168 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 -0.3634 -1.0240 0.0874 34 1 2.2491 -1.6318 1.1524 35 1 2.9707 -2.7679 2.8598 36 1 1.9017 0.7922 7.2826 37 1 1.4985 3.1733 7.8624 38 1 1.9530 4.9170 6.1870 39 1 3.1932 2.0988 3.4059 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970592498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:05 Heat of formation + Delta-G solvation = 134.603589 kcal Electronic energy + Delta-G solvation = -28786.672749 eV Core-core repulsion = 24807.890005 eV Total energy + Delta-G solvation = -3978.782744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52438 -39.88616 -39.48443 -38.04437 -34.87270 -33.60039 -32.29546 -32.05191 -31.36405 -30.31062 -29.49331 -27.52354 -24.79033 -24.34883 -24.15255 -23.72263 -23.08960 -21.30603 -20.49370 -20.06705 -19.38991 -18.45945 -17.17287 -16.77850 -16.51650 -16.22162 -15.85739 -15.69748 -15.21033 -14.79089 -14.51805 -14.29198 -14.01997 -13.95658 -13.81211 -13.62383 -13.19398 -13.15177 -12.92025 -12.32489 -12.09491 -11.98922 -11.62990 -11.40643 -11.28413 -11.23430 -10.90715 -10.71544 -10.65090 -10.36263 -10.09305 -9.86377 -9.81192 -9.67199 -9.50543 -9.24614 -9.18766 -8.81058 -8.76447 -8.66196 -6.88438 -5.79183 -3.10084 0.66848 1.21837 1.23167 2.05086 2.30140 3.29334 3.38480 3.39697 3.43181 3.45615 3.80510 3.95388 4.25120 4.44703 4.54199 4.69627 4.79745 4.86586 4.95902 5.02699 5.14710 5.18827 5.25654 5.37907 5.39719 5.56083 5.69074 5.75565 5.82651 5.83201 5.99496 6.03342 6.10061 6.12884 6.31068 6.39022 6.44921 6.58961 6.63403 6.67965 6.70349 6.82364 7.10031 7.18282 7.34526 7.51744 7.68257 7.96121 7.97633 8.38543 9.02644 9.69265 10.64117 11.39576 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002394 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.697854 B =11695.134684 C =12452.965035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.091 0.909 4 N -0.714 5.714 5 C 0.589 3.411 6 O -0.536 6.536 7 C -0.275 4.275 8 C 0.110 3.890 9 N -0.463 5.463 10 H 0.445 0.555 11 N -0.284 5.284 12 C 0.176 3.824 13 C -0.084 4.084 14 C -0.046 4.046 15 C -0.190 4.190 16 C 0.108 3.892 17 N -0.486 5.486 18 C 0.170 3.830 19 C -0.155 4.155 20 C 0.125 3.875 21 N -0.610 5.610 22 C -0.220 4.220 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.280 1.280 29 H -0.290 1.290 30 C 0.175 3.825 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.394 0.606 35 H 0.191 0.809 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.254 0.746 44 H 0.031 0.969 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -5.062 25.118 25.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.109 0.891 4 N -0.363 5.363 5 C 0.376 3.624 6 O -0.415 6.415 7 C -0.291 4.291 8 C -0.040 4.040 9 N -0.168 5.168 10 H 0.289 0.711 11 N -0.105 5.105 12 C 0.006 3.994 13 C -0.088 4.088 14 C -0.073 4.073 15 C -0.210 4.210 16 C -0.049 4.049 17 N -0.195 5.195 18 C 0.012 3.988 19 C -0.175 4.175 20 C -0.001 4.001 21 N -0.336 5.336 22 C -0.347 4.347 23 H 0.098 0.902 24 C -0.204 4.204 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.206 1.206 29 H -0.216 1.216 30 C 0.049 3.951 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.208 0.792 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.194 0.806 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.209 -3.876 25.301 25.691 hybrid contribution 0.272 -1.757 -0.919 2.001 sum -1.937 -5.633 24.382 25.099 Atomic orbital electron populations 1.22109 0.95455 1.01562 1.02470 1.21019 0.93711 0.97493 0.82568 0.89124 1.45959 1.67106 1.13700 1.09561 1.17133 0.77245 0.86205 0.81783 1.90756 1.51058 1.15138 1.84533 1.21404 1.18691 0.93483 0.95483 1.23091 0.95049 0.97088 0.88779 1.45932 1.52140 1.11433 1.07338 0.71075 1.77333 1.23625 0.91286 1.18209 1.21574 0.95442 0.92410 0.89925 1.18697 1.04914 0.89593 0.95613 1.21584 0.94059 0.96981 0.94692 1.21997 1.04054 0.93344 1.01572 1.22949 0.93017 1.00010 0.88878 1.67875 1.12558 1.20974 1.18080 1.23510 0.90694 0.86021 0.98609 1.23705 0.98042 1.00799 0.94922 1.22364 0.92853 0.97768 0.87156 1.45671 1.19076 1.69385 0.99437 1.18925 1.05188 1.28008 0.82596 0.90181 1.24832 0.98747 0.99120 0.97732 1.69846 1.25861 1.35935 1.24826 0.86111 0.78381 0.78033 0.83278 1.21597 1.20566 1.21581 1.21951 0.90046 0.93751 0.89376 0.92657 0.91116 0.92942 0.77248 0.79212 0.84843 0.84714 0.82804 0.80613 0.89066 0.94654 0.95071 0.93583 0.95086 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.47 37.16 0.35 -1.77 16 2 C 0.16 2.27 2.34 -67.93 -0.16 2.11 16 3 H 0.09 1.54 7.43 -51.93 -0.39 1.16 16 4 N -0.71 -8.39 4.95 -54.92 -0.27 -8.67 16 5 C 0.59 7.76 7.65 -12.58 -0.10 7.67 16 6 O -0.54 -8.80 12.15 5.26 0.06 -8.73 16 7 C -0.28 -3.04 6.27 -102.95 -0.65 -3.68 16 8 C 0.11 0.77 11.50 -16.64 -0.19 0.58 16 9 N -0.46 -3.18 7.20 30.81 0.22 -2.96 16 10 H 0.44 1.38 8.96 -182.85 -1.64 -0.26 16 11 N -0.28 -3.02 12.64 34.58 0.44 -2.58 16 12 C 0.18 2.12 6.96 -80.56 -0.56 1.56 16 13 C -0.08 -1.07 5.74 -104.76 -0.60 -1.67 16 14 C -0.05 -0.48 9.92 -38.94 -0.39 -0.87 16 15 C -0.19 -1.74 10.10 -39.49 -0.40 -2.14 16 16 C 0.11 1.16 11.17 -17.50 -0.20 0.97 16 17 N -0.49 -6.87 10.35 -12.96 -0.13 -7.01 16 18 C 0.17 2.43 8.96 -17.18 -0.15 2.28 16 19 C -0.15 -2.61 3.52 -89.97 -0.32 -2.93 16 20 C 0.12 2.44 8.14 -8.52 -0.07 2.37 16 21 N -0.61 -15.45 3.76 -184.61 -0.69 -16.14 16 22 C -0.22 -6.14 10.73 -15.06 -0.16 -6.30 16 23 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.92 -27.28 11.80 55.49 0.65 -26.62 16 26 Si 0.91 22.01 29.56 -169.99 -5.02 16.98 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 C 0.18 3.98 6.79 -8.38 -0.06 3.93 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.39 3.48 7.56 -40.82 -0.31 3.17 16 35 H 0.19 0.54 7.48 -52.48 -0.39 0.15 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.18 2.73 5.70 -52.49 -0.30 2.43 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.63 8.11 -51.92 -0.42 0.21 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.03 0.74 8.00 -51.93 -0.42 0.33 16 45 H 0.06 1.54 7.57 -51.93 -0.39 1.15 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -36.30 380.33 -9.94 -46.23 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.18 Total: 1.97 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.74 Total: 1.79 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.21 Total: -63.98 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.06 Total: -8.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.30 -9.94 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970592498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.837 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds