Wall clock time and date at job start Wed Apr 1 2020 00:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 N 1.46495 * 109.47545 * 120.00598 * 2 1 3 5 5 C 1.34782 * 119.99593 * 275.00144 * 4 2 1 6 6 O 1.21616 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.47295 * 119.99814 * 179.97438 * 5 4 2 8 8 C 1.37959 * 126.80785 * 359.68319 * 7 5 4 9 9 N 1.34155 * 107.88628 * 179.87016 * 8 7 5 10 10 H 0.96999 * 125.16551 * 180.14562 * 9 8 7 11 11 N 1.39768 * 109.67309 * 0.40789 * 9 8 7 12 12 C 1.31365 * 109.08161 * 359.74115 * 11 9 8 13 13 C 1.48299 * 126.51195 * 179.97438 * 12 11 9 14 14 C 1.39798 * 120.54293 * 325.00516 * 13 12 11 15 15 C 1.38405 * 118.30966 * 179.97438 * 14 13 12 16 16 C 1.38317 * 119.28317 * 359.97438 * 15 14 13 17 17 N 1.31889 * 121.04284 * 359.97438 * 16 15 14 18 18 C 1.31739 * 121.85391 * 359.72831 * 17 16 15 19 19 C 1.53006 * 109.46965 * 240.00413 * 2 1 3 20 20 C 1.53497 * 114.20590 * 174.71570 * 19 2 1 21 21 N 1.47063 * 87.98756 * 220.34354 * 20 19 2 22 22 C 1.36933 * 136.06152 * 207.08176 * 21 20 19 23 23 H 1.08004 * 119.99948 * 6.49730 * 22 21 20 24 24 C 1.38805 * 120.00422 * 186.49224 * 22 21 20 25 25 N 1.31621 * 119.99799 * 6.27156 * 24 22 21 26 26 Si 1.86798 * 120.00357 * 186.27268 * 24 22 21 27 27 H 1.48511 * 109.47134 * 265.01290 * 26 24 22 28 28 H 1.48498 * 109.47125 * 25.00956 * 26 24 22 29 29 H 1.48499 * 109.47537 * 145.01308 * 26 24 22 30 30 C 1.47070 * 87.88273 * 27.34326 * 21 20 19 31 31 H 1.09001 * 109.47003 * 304.87675 * 1 2 3 32 32 H 1.08996 * 109.47162 * 64.88035 * 1 2 3 33 33 H 1.09008 * 109.47161 * 184.88094 * 1 2 3 34 34 H 0.96993 * 120.00462 * 94.99632 * 4 2 1 35 35 H 1.08005 * 126.05555 * 359.97438 * 8 7 5 36 36 H 1.08001 * 120.84627 * 359.95228 * 14 13 12 37 37 H 1.07999 * 120.36010 * 180.02562 * 15 14 13 38 38 H 1.08006 * 119.47907 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.70634 * 180.26427 * 18 17 16 40 40 H 1.08994 * 113.41243 * 307.91400 * 19 2 1 41 41 H 1.09000 * 113.46682 * 105.56058 * 20 19 2 42 42 H 1.09008 * 113.52408 * 335.13690 * 20 19 2 43 43 H 0.97005 * 119.99736 * 179.97438 * 25 24 22 44 44 H 1.09006 * 113.46411 * 87.43633 * 30 21 20 45 45 H 1.09003 * 113.46855 * 217.87664 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8582 1.1617 2.4117 7 6 2.6376 -0.7129 3.5598 8 6 2.9978 -2.0410 3.6582 9 7 3.3897 -2.2692 4.9208 10 1 3.6975 -3.1223 5.2647 11 7 3.2815 -1.0923 5.6670 12 6 2.8340 -0.1315 4.8911 13 6 2.5757 1.2742 5.2869 14 6 2.0941 1.5755 6.5643 15 6 1.8698 2.9031 6.8849 16 6 2.1273 3.8801 5.9403 17 7 2.5824 3.5654 4.7431 18 6 2.8165 2.3168 4.3943 19 6 2.0399 -0.7212 -1.2494 20 6 3.5641 -0.6739 -1.4253 21 7 3.3395 -0.4640 -2.8634 22 6 4.0309 -0.7208 -4.0172 23 1 4.9487 -1.2890 -3.9816 24 6 3.5522 -0.2509 -5.2324 25 7 2.5037 0.5440 -5.2637 26 14 4.3961 -0.7468 -6.8234 27 1 5.3783 0.2982 -7.2094 28 1 5.1001 -2.0397 -6.6283 29 1 3.3812 -0.8930 -7.8975 30 6 2.0485 0.1492 -2.5168 31 1 -0.3633 0.5876 0.8431 32 1 -0.3633 0.4362 -0.9304 33 1 -0.3634 -1.0240 0.0874 34 1 2.2491 -1.6318 1.1524 35 1 2.9707 -2.7679 2.8598 36 1 1.9017 0.7922 7.2826 37 1 1.4985 3.1733 7.8624 38 1 1.9530 4.9170 6.1870 39 1 3.1932 2.0988 3.4059 40 1 1.6048 -1.7111 -1.3859 41 1 4.0570 -1.6187 -1.1962 42 1 4.0330 0.1767 -0.9304 43 1 2.1694 0.8726 -6.1130 44 1 2.1169 1.2171 -2.3095 45 1 1.2501 -0.0944 -3.2178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970592498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:04 Heat of formation + Delta-G solvation = 107.914019 kcal Electronic energy + Delta-G solvation = -28787.830095 eV Core-core repulsion = 24807.890005 eV Total energy + Delta-G solvation = -3979.940090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26643 -40.74579 -40.70632 -39.48173 -36.15202 -34.43707 -34.16197 -32.86789 -32.51632 -31.11026 -30.47238 -29.32689 -26.40949 -25.78550 -25.15363 -24.62817 -24.18659 -22.56944 -21.37283 -21.21990 -20.58738 -19.38362 -18.70450 -17.99644 -17.47288 -17.08435 -17.00596 -16.79992 -16.51780 -16.03019 -15.83494 -15.43088 -15.36638 -14.93787 -14.79946 -14.68574 -14.60566 -14.06764 -13.96887 -13.76796 -13.38427 -13.19414 -13.01860 -12.98999 -12.81033 -12.67176 -12.33608 -12.11204 -12.00202 -11.82014 -11.52978 -11.42502 -11.03582 -10.84723 -10.80568 -10.56969 -10.39107 -10.07930 -9.79923 -9.48207 -8.92098 -7.92114 -5.24342 -0.17053 0.38636 0.56699 1.21177 1.46349 1.48228 1.57629 1.73487 2.27591 2.47197 2.48360 2.94524 3.22289 3.31350 3.47266 3.58922 3.70081 3.76419 3.99307 4.03856 4.05893 4.15407 4.20537 4.32705 4.40441 4.44513 4.52569 4.61660 4.64629 4.83208 4.88767 4.91885 4.95107 5.00682 5.05046 5.18794 5.24033 5.24436 5.28121 5.35251 5.52383 5.63599 5.69098 5.80372 5.92641 6.22687 6.40702 6.77784 6.90769 7.09556 7.44453 7.60368 8.62200 9.27119 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002394 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.697854 B =11695.134684 C =12452.965035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.170 3.830 3 H 0.059 0.941 4 N -0.701 5.701 5 C 0.588 3.412 6 O -0.576 6.576 7 C -0.311 4.311 8 C 0.147 3.853 9 N -0.444 5.444 10 H 0.463 0.537 11 N -0.300 5.300 12 C 0.157 3.843 13 C -0.096 4.096 14 C -0.051 4.051 15 C -0.174 4.174 16 C 0.095 3.905 17 N -0.522 5.522 18 C 0.146 3.854 19 C -0.109 4.109 20 C 0.127 3.873 21 N -0.643 5.643 22 C -0.230 4.230 23 H 0.088 0.912 24 C -0.070 4.070 25 N -0.955 5.955 26 Si 0.980 3.020 27 H -0.290 1.290 28 H -0.263 1.263 29 H -0.293 1.293 30 C 0.168 3.832 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.413 0.587 35 H 0.240 0.760 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.025 0.975 43 H 0.249 0.751 44 H 0.007 0.993 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -8.135 27.320 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.064 3.936 3 H 0.077 0.923 4 N -0.352 5.352 5 C 0.378 3.622 6 O -0.457 6.457 7 C -0.326 4.326 8 C -0.005 4.005 9 N -0.151 5.151 10 H 0.312 0.688 11 N -0.121 5.121 12 C -0.012 4.012 13 C -0.100 4.100 14 C -0.078 4.078 15 C -0.194 4.194 16 C -0.061 4.061 17 N -0.232 5.232 18 C -0.012 4.012 19 C -0.129 4.129 20 C 0.002 3.998 21 N -0.369 5.369 22 C -0.358 4.358 23 H 0.105 0.895 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.808 3.192 27 H -0.217 1.217 28 H -0.187 1.187 29 H -0.220 1.220 30 C 0.042 3.958 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.868 -7.017 27.567 28.508 hybrid contribution 0.214 -0.807 -1.479 1.698 sum -1.654 -7.824 26.089 27.287 Atomic orbital electron populations 1.22030 0.94323 1.02889 1.01637 1.20600 0.94416 0.95822 0.82772 0.92302 1.45634 1.66982 1.14383 1.08182 1.17447 0.76538 0.85770 0.82479 1.90758 1.52708 1.17083 1.85174 1.21247 1.21790 0.95258 0.94338 1.23702 0.91355 0.96068 0.89388 1.45991 1.50654 1.11311 1.07172 0.68769 1.77262 1.23876 0.92118 1.18870 1.21622 0.96302 0.92456 0.90772 1.18838 1.05012 0.89895 0.96225 1.21894 0.93570 0.98197 0.94164 1.22404 1.01970 0.92375 1.02630 1.23483 0.92597 1.01903 0.88142 1.67774 1.13933 1.21277 1.20185 1.23173 0.92673 0.86953 0.98395 1.23319 0.96297 1.00352 0.92950 1.22486 0.94810 0.98638 0.83862 1.46104 1.20086 1.69476 1.01191 1.19376 1.05264 1.27241 0.83892 0.89456 1.25716 0.99755 0.99687 1.01142 1.70041 1.27664 1.37615 1.25065 0.85037 0.77104 0.78168 0.78871 1.21741 1.18706 1.22001 1.21906 0.88665 0.93478 0.91760 0.93344 0.92154 0.90445 0.75012 0.74368 0.82970 0.80801 0.80060 0.83128 0.86751 0.91806 0.95677 0.94261 0.97494 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.47 71.98 0.68 -3.29 16 2 C 0.17 4.87 2.34 44.99 0.11 4.97 16 3 H 0.06 2.11 7.43 -2.39 -0.02 2.09 16 4 N -0.70 -15.28 4.95 -445.93 -2.21 -17.49 16 5 C 0.59 15.36 7.65 86.62 0.66 16.03 16 6 O -0.58 -19.98 12.15 -4.08 -0.05 -20.03 16 7 C -0.31 -6.42 6.27 -18.78 -0.12 -6.54 16 8 C 0.15 1.47 11.50 84.27 0.97 2.44 16 9 N -0.44 -4.53 7.20 -56.43 -0.41 -4.93 16 10 H 0.46 0.94 8.96 -213.53 -1.91 -0.98 16 11 N -0.30 -5.80 12.64 -44.52 -0.56 -6.37 16 12 C 0.16 3.70 6.96 44.07 0.31 4.01 16 13 C -0.10 -2.48 5.74 -19.96 -0.11 -2.59 16 14 C -0.05 -1.03 9.92 22.69 0.23 -0.80 16 15 C -0.17 -2.91 10.10 22.33 0.23 -2.68 16 16 C 0.10 2.01 11.17 84.70 0.95 2.96 16 17 N -0.52 -15.59 10.35 -194.92 -2.02 -17.61 16 18 C 0.15 4.48 8.96 84.97 0.76 5.25 16 19 C -0.11 -3.59 3.52 -10.37 -0.04 -3.63 16 20 C 0.13 4.83 8.14 83.17 0.68 5.50 16 21 N -0.64 -32.79 3.76 -737.98 -2.78 -35.57 16 22 C -0.23 -12.86 10.73 84.03 0.90 -11.96 16 23 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.96 -58.66 11.80 21.65 0.26 -58.40 16 26 Si 0.98 45.71 29.56 68.60 2.03 47.74 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 30 C 0.17 7.92 6.79 83.26 0.57 8.49 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.41 5.70 7.56 -92.71 -0.70 5.00 16 35 H 0.24 -0.14 7.48 -2.91 -0.02 -0.16 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.15 5.24 5.70 -2.91 -0.02 5.22 16 40 H 0.11 3.32 8.14 -2.39 -0.02 3.31 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.01 8.11 -2.38 -0.02 0.99 16 43 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 44 H 0.01 0.37 8.00 -2.38 -0.02 0.35 16 45 H 0.03 1.71 7.57 -2.39 -0.02 1.70 16 Total: -1.00 -85.20 380.33 -0.08 -85.28 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -1.57 Total: 12.78 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 7.23 Total: 14.60 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -7.72 Total: -140.37 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -85.20 -0.08 -85.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970592498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.198 kcal (2) G-P(sol) polarization free energy of solvation -85.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds