Wall clock time and date at job start Wed Apr 1 2020 00:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 N 1.46503 * 109.46974 * 240.00321 * 2 1 3 5 5 C 1.34778 * 120.00087 * 84.99786 * 4 2 1 6 6 O 1.21617 * 119.99518 * 0.02562 * 5 4 2 7 7 C 1.47281 * 120.00135 * 179.97438 * 5 4 2 8 8 C 1.37966 * 126.80561 * 359.97438 * 7 5 4 9 9 N 1.34163 * 107.88512 * 180.26061 * 8 7 5 10 10 H 0.96997 * 125.16326 * 179.75874 * 9 8 7 11 11 N 1.39768 * 109.67122 * 359.60438 * 9 8 7 12 12 C 1.31356 * 109.08272 * 0.40438 * 11 9 8 13 13 C 1.48302 * 126.51502 * 179.74278 * 12 11 9 14 14 C 1.39803 * 120.53942 * 325.02374 * 13 12 11 15 15 C 1.38406 * 118.30970 * 179.97438 * 14 13 12 16 16 C 1.38314 * 119.28369 * 359.97438 * 15 14 13 17 17 N 1.31893 * 121.04266 * 0.02911 * 16 15 14 18 18 C 1.31743 * 121.85057 * 359.67452 * 17 16 15 19 19 C 1.53003 * 109.46975 * 120.00198 * 2 1 3 20 20 C 1.53943 * 113.74103 * 282.19758 * 19 2 1 21 21 N 1.47819 * 86.03289 * 222.08847 * 20 19 2 22 22 C 1.36935 * 134.45210 * 204.64848 * 21 20 19 23 23 H 1.08004 * 120.00080 * 182.58103 * 22 21 20 24 24 C 1.38817 * 120.00203 * 2.57994 * 22 21 20 25 25 N 1.31610 * 120.00011 * 353.41778 * 24 22 21 26 26 Si 1.86802 * 120.00045 * 173.41597 * 24 22 21 27 27 H 1.48497 * 109.47169 * 94.96898 * 26 24 22 28 28 H 1.48492 * 109.47406 * 214.97458 * 26 24 22 29 29 H 1.48501 * 109.47160 * 334.97474 * 26 24 22 30 30 C 1.47576 * 91.05406 * 24.54913 * 21 20 19 31 31 H 1.09007 * 109.47344 * 184.48627 * 1 2 3 32 32 H 1.09004 * 109.47322 * 304.48615 * 1 2 3 33 33 H 1.08999 * 109.47515 * 64.48577 * 1 2 3 34 34 H 0.97001 * 119.99434 * 264.99683 * 4 2 1 35 35 H 1.07992 * 126.05927 * 359.97438 * 8 7 5 36 36 H 1.08002 * 120.84796 * 359.95644 * 14 13 12 37 37 H 1.08001 * 120.35320 * 180.02562 * 15 14 13 38 38 H 1.08009 * 119.47901 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.70225 * 180.29270 * 18 17 16 40 40 H 1.08993 * 112.94181 * 53.79069 * 19 2 1 41 41 H 1.09000 * 113.77122 * 336.34395 * 20 19 2 42 42 H 1.08995 * 113.76841 * 107.75210 * 20 19 2 43 43 H 0.97003 * 120.00137 * 180.02562 * 25 24 22 44 44 H 1.08997 * 113.76840 * 221.15351 * 30 21 20 45 45 H 1.09003 * 113.86822 * 89.76774 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1620 -2.4116 7 6 2.6384 -0.7122 -3.5597 8 6 3.0057 -2.0386 -3.6564 9 7 3.3986 -2.2664 -4.9188 10 1 3.7122 -3.1180 -5.2612 11 7 3.2840 -1.0910 -5.6665 12 6 2.8346 -0.1308 -4.8910 13 6 2.5754 1.2747 -5.2868 14 6 3.3917 1.9099 -6.2274 15 6 3.1077 3.2222 -6.5634 16 6 2.0350 3.8570 -5.9638 17 7 1.2823 3.2318 -5.0794 18 6 1.5104 1.9815 -4.7324 19 6 2.0399 -0.7213 1.2493 20 6 1.9658 0.1297 2.5299 21 7 3.3033 -0.4147 2.8461 22 6 4.0103 -0.6100 4.0025 23 1 5.0167 -0.9998 3.9608 24 6 3.4335 -0.3071 5.2283 25 7 2.2603 0.2874 5.2746 26 14 4.3227 -0.7433 6.8121 27 1 5.0969 0.4323 7.2851 28 1 3.3302 -1.1311 7.8463 29 1 5.2481 -1.8779 6.5640 30 6 3.5693 -0.6652 1.4163 31 1 -0.3634 -1.0246 0.0804 32 1 -0.3634 0.5819 0.8471 33 1 -0.3634 0.4426 -0.9274 34 1 2.2490 -1.6317 -1.1526 35 1 2.9854 -2.7638 -2.8564 36 1 4.2231 1.3900 -6.6802 37 1 3.7165 3.7445 -7.2865 38 1 1.8107 4.8812 -6.2234 39 1 0.8690 1.5018 -4.0079 40 1 1.6225 -1.7218 1.3623 41 1 1.9615 1.2037 2.3442 42 1 1.1864 -0.1867 3.2231 43 1 1.8574 0.4994 6.1311 44 1 4.0676 -1.6150 1.2221 45 1 4.0371 0.1738 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970592499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:08 Heat of formation + Delta-G solvation = 131.712730 kcal Electronic energy + Delta-G solvation = -28797.226990 eV Core-core repulsion = 24818.318889 eV Total energy + Delta-G solvation = -3978.908101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52459 -39.88815 -39.44699 -37.90439 -34.82795 -33.60013 -32.26834 -32.05381 -31.33177 -30.31334 -29.48462 -27.46409 -24.90657 -24.37677 -24.15731 -23.70543 -23.06139 -21.28527 -20.49346 -20.05690 -19.33007 -18.41416 -17.17292 -16.79914 -16.49798 -16.22675 -15.82373 -15.76816 -15.21408 -14.79661 -14.56475 -14.20723 -13.99241 -13.94229 -13.81461 -13.62189 -13.19717 -13.11300 -12.96297 -12.31804 -12.09166 -11.92727 -11.58032 -11.38758 -11.30400 -11.23859 -10.90391 -10.66919 -10.63873 -10.35559 -10.08078 -9.81560 -9.80145 -9.62640 -9.51399 -9.43300 -9.20707 -8.83041 -8.73602 -8.63638 -6.87680 -5.76970 -3.07775 0.66605 1.21783 1.23106 2.05273 2.29847 3.29304 3.38960 3.40534 3.43859 3.46095 3.79772 3.95644 4.25119 4.45510 4.53373 4.70070 4.80150 4.86510 4.95994 5.03330 5.14809 5.15676 5.26036 5.38116 5.42544 5.55843 5.67065 5.75142 5.83148 5.85354 6.01919 6.03531 6.10175 6.12606 6.31637 6.37245 6.47536 6.59412 6.63182 6.66622 6.70202 6.84069 7.10002 7.23247 7.38448 7.56078 7.68570 7.96320 7.98652 8.38794 9.05036 9.71580 10.61095 11.40662 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.002395 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.853239 B =11687.888915 C =12361.817037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.714 5.714 5 C 0.589 3.411 6 O -0.536 6.536 7 C -0.275 4.275 8 C 0.110 3.890 9 N -0.463 5.463 10 H 0.445 0.555 11 N -0.284 5.284 12 C 0.176 3.824 13 C -0.084 4.084 14 C -0.046 4.046 15 C -0.189 4.189 16 C 0.108 3.892 17 N -0.487 5.487 18 C 0.169 3.831 19 C -0.146 4.146 20 C 0.176 3.824 21 N -0.613 5.613 22 C -0.224 4.224 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.126 3.874 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.191 0.809 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.088 0.912 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 -4.343 -24.865 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.108 0.892 4 N -0.363 5.363 5 C 0.376 3.624 6 O -0.415 6.415 7 C -0.291 4.291 8 C -0.040 4.040 9 N -0.168 5.168 10 H 0.289 0.711 11 N -0.105 5.105 12 C 0.006 3.994 13 C -0.088 4.088 14 C -0.073 4.073 15 C -0.209 4.209 16 C -0.049 4.049 17 N -0.196 5.196 18 C 0.011 3.989 19 C -0.166 4.166 20 C 0.050 3.950 21 N -0.339 5.339 22 C -0.352 4.352 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.216 1.216 29 H -0.206 1.206 30 C 0.000 4.000 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.208 0.792 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.193 0.807 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.268 -3.381 -25.291 25.548 hybrid contribution 1.514 -1.444 1.248 2.436 sum 0.246 -4.825 -24.044 24.524 Atomic orbital electron populations 1.22108 0.95360 1.01807 1.02272 1.21118 0.93796 0.97547 0.82741 0.89247 1.45967 1.67088 1.13660 1.09610 1.17129 0.77183 0.86209 0.81870 1.90756 1.51235 1.15185 1.84314 1.21406 1.18817 0.93428 0.95408 1.23093 0.95082 0.97065 0.88766 1.45934 1.51990 1.11610 1.07316 0.71075 1.77328 1.23791 0.91327 1.18005 1.21573 0.95478 0.92444 0.89867 1.18694 0.99388 0.90349 1.00356 1.21597 0.97557 0.94403 0.93713 1.22002 1.00188 0.95560 1.03136 1.22940 0.90675 0.99896 0.91343 1.67864 1.29189 1.09527 1.12996 1.23473 0.93569 0.88992 0.92880 1.23832 0.97513 1.00659 0.94613 1.22231 0.89560 0.94006 0.89216 1.46051 1.16106 1.72082 0.99632 1.19017 0.96878 1.36678 0.82588 0.90384 1.24775 0.97307 1.00895 0.97420 1.69819 1.17190 1.45476 1.24207 0.86132 0.78394 0.78017 0.83398 1.21695 1.21582 1.20636 1.22526 0.93130 0.97586 0.86802 0.92849 0.91175 0.92648 0.77276 0.79211 0.84806 0.84681 0.82793 0.80687 0.89403 0.95330 0.90873 0.93628 0.94288 0.95023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.43 37.16 0.35 -1.75 16 2 C 0.15 2.22 2.29 -67.93 -0.16 2.07 16 3 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16 4 N -0.71 -8.43 4.94 -54.93 -0.27 -8.70 16 5 C 0.59 7.78 7.65 -12.58 -0.10 7.68 16 6 O -0.54 -8.82 12.14 5.26 0.06 -8.76 16 7 C -0.28 -3.04 6.27 -102.95 -0.65 -3.69 16 8 C 0.11 0.77 11.50 -16.63 -0.19 0.58 16 9 N -0.46 -3.18 7.20 30.81 0.22 -2.96 16 10 H 0.44 1.38 8.96 -182.85 -1.64 -0.25 16 11 N -0.28 -3.01 12.64 34.57 0.44 -2.58 16 12 C 0.18 2.12 6.96 -80.56 -0.56 1.56 16 13 C -0.08 -1.06 5.74 -104.76 -0.60 -1.66 16 14 C -0.05 -0.49 9.92 -38.93 -0.39 -0.87 16 15 C -0.19 -1.76 10.10 -39.49 -0.40 -2.16 16 16 C 0.11 1.16 11.17 -17.50 -0.20 0.96 16 17 N -0.49 -6.75 10.35 -12.96 -0.13 -6.89 16 18 C 0.17 2.37 8.96 -17.18 -0.15 2.21 16 19 C -0.15 -2.50 3.35 -89.69 -0.30 -2.80 16 20 C 0.18 4.00 7.03 -2.84 -0.02 3.98 16 21 N -0.61 -15.52 3.70 -177.71 -0.66 -16.18 16 22 C -0.22 -6.28 10.69 -15.06 -0.16 -6.44 16 23 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.92 -27.19 11.43 55.49 0.63 -26.55 16 26 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 C 0.13 2.46 8.38 -2.97 -0.02 2.44 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 3.49 7.56 -40.82 -0.31 3.18 16 35 H 0.19 0.54 7.48 -52.49 -0.39 0.15 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.18 2.59 5.69 -52.49 -0.30 2.29 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.68 8.04 -51.93 -0.42 0.27 16 42 H 0.07 1.83 7.20 -51.93 -0.37 1.46 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -36.28 379.77 -9.81 -46.10 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.17 Total: 1.94 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.64 Total: 1.81 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.23 Total: -63.86 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.06 Total: -8.76 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.28 -9.81 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970592499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.809 kcal (2) G-P(sol) polarization free energy of solvation -36.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds