Wall clock time and date at job start Wed Apr 1 2020 00:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 N 1.46503 * 109.46974 * 240.00321 * 2 1 3 5 5 C 1.34778 * 120.00087 * 84.99786 * 4 2 1 6 6 O 1.21617 * 119.99518 * 0.02562 * 5 4 2 7 7 C 1.47281 * 120.00135 * 179.97438 * 5 4 2 8 8 C 1.37966 * 126.80561 * 359.97438 * 7 5 4 9 9 N 1.34163 * 107.88512 * 180.26061 * 8 7 5 10 10 H 0.96997 * 125.16326 * 179.75874 * 9 8 7 11 11 N 1.39768 * 109.67122 * 359.60438 * 9 8 7 12 12 C 1.31356 * 109.08272 * 0.40438 * 11 9 8 13 13 C 1.48302 * 126.51502 * 179.74278 * 12 11 9 14 14 C 1.39803 * 120.53942 * 325.02374 * 13 12 11 15 15 C 1.38406 * 118.30970 * 179.97438 * 14 13 12 16 16 C 1.38314 * 119.28369 * 359.97438 * 15 14 13 17 17 N 1.31893 * 121.04266 * 0.02911 * 16 15 14 18 18 C 1.31743 * 121.85057 * 359.67452 * 17 16 15 19 19 C 1.53003 * 109.46975 * 120.00198 * 2 1 3 20 20 C 1.53943 * 113.74103 * 282.19758 * 19 2 1 21 21 N 1.47819 * 86.03289 * 222.08847 * 20 19 2 22 22 C 1.36935 * 134.45210 * 204.64848 * 21 20 19 23 23 H 1.08004 * 120.00080 * 182.58103 * 22 21 20 24 24 C 1.38817 * 120.00203 * 2.57994 * 22 21 20 25 25 N 1.31610 * 120.00011 * 353.41778 * 24 22 21 26 26 Si 1.86802 * 120.00045 * 173.41597 * 24 22 21 27 27 H 1.48497 * 109.47169 * 94.96898 * 26 24 22 28 28 H 1.48492 * 109.47406 * 214.97458 * 26 24 22 29 29 H 1.48501 * 109.47160 * 334.97474 * 26 24 22 30 30 C 1.47576 * 91.05406 * 24.54913 * 21 20 19 31 31 H 1.09007 * 109.47344 * 184.48627 * 1 2 3 32 32 H 1.09004 * 109.47322 * 304.48615 * 1 2 3 33 33 H 1.08999 * 109.47515 * 64.48577 * 1 2 3 34 34 H 0.97001 * 119.99434 * 264.99683 * 4 2 1 35 35 H 1.07992 * 126.05927 * 359.97438 * 8 7 5 36 36 H 1.08002 * 120.84796 * 359.95644 * 14 13 12 37 37 H 1.08001 * 120.35320 * 180.02562 * 15 14 13 38 38 H 1.08009 * 119.47901 * 179.97438 * 16 15 14 39 39 H 1.08001 * 119.70225 * 180.29270 * 18 17 16 40 40 H 1.08993 * 112.94181 * 53.79069 * 19 2 1 41 41 H 1.09000 * 113.77122 * 336.34395 * 20 19 2 42 42 H 1.08995 * 113.76841 * 107.75210 * 20 19 2 43 43 H 0.97003 * 120.00137 * 180.02562 * 25 24 22 44 44 H 1.08997 * 113.76840 * 221.15351 * 30 21 20 45 45 H 1.09003 * 113.86822 * 89.76774 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1620 -2.4116 7 6 2.6384 -0.7122 -3.5597 8 6 3.0057 -2.0386 -3.6564 9 7 3.3986 -2.2664 -4.9188 10 1 3.7122 -3.1180 -5.2612 11 7 3.2840 -1.0910 -5.6665 12 6 2.8346 -0.1308 -4.8910 13 6 2.5754 1.2747 -5.2868 14 6 3.3917 1.9099 -6.2274 15 6 3.1077 3.2222 -6.5634 16 6 2.0350 3.8570 -5.9638 17 7 1.2823 3.2318 -5.0794 18 6 1.5104 1.9815 -4.7324 19 6 2.0399 -0.7213 1.2493 20 6 1.9658 0.1297 2.5299 21 7 3.3033 -0.4147 2.8461 22 6 4.0103 -0.6100 4.0025 23 1 5.0167 -0.9998 3.9608 24 6 3.4335 -0.3071 5.2283 25 7 2.2603 0.2874 5.2746 26 14 4.3227 -0.7433 6.8121 27 1 5.0969 0.4323 7.2851 28 1 3.3302 -1.1311 7.8463 29 1 5.2481 -1.8779 6.5640 30 6 3.5693 -0.6652 1.4163 31 1 -0.3634 -1.0246 0.0804 32 1 -0.3634 0.5819 0.8471 33 1 -0.3634 0.4426 -0.9274 34 1 2.2490 -1.6317 -1.1526 35 1 2.9854 -2.7638 -2.8564 36 1 4.2231 1.3900 -6.6802 37 1 3.7165 3.7445 -7.2865 38 1 1.8107 4.8812 -6.2234 39 1 0.8690 1.5018 -4.0079 40 1 1.6225 -1.7218 1.3623 41 1 1.9615 1.2037 2.3442 42 1 1.1864 -0.1867 3.2231 43 1 1.8574 0.4994 6.1311 44 1 4.0676 -1.6150 1.2221 45 1 4.0371 0.1738 0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970592499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:07 Heat of formation + Delta-G solvation = 105.278818 kcal Electronic energy + Delta-G solvation = -28798.373250 eV Core-core repulsion = 24818.318889 eV Total energy + Delta-G solvation = -3980.054361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26578 -40.72560 -40.64646 -39.36865 -36.11883 -34.43153 -34.11903 -32.86775 -32.49402 -31.11004 -30.46504 -29.26475 -26.55980 -25.74427 -25.15015 -24.62043 -24.16675 -22.54878 -21.36958 -21.18112 -20.53086 -19.36432 -18.72038 -17.99208 -17.46352 -17.10550 -17.03299 -16.77101 -16.53031 -16.03454 -15.80572 -15.51734 -15.19419 -14.93429 -14.89345 -14.67311 -14.51940 -14.07178 -13.94648 -13.80288 -13.32763 -13.18466 -13.04741 -12.95741 -12.76821 -12.64420 -12.32924 -12.10401 -12.00839 -11.75325 -11.51749 -11.41987 -11.18997 -10.83157 -10.79627 -10.56319 -10.39659 -10.06979 -9.81706 -9.47289 -8.90591 -7.89589 -5.21691 -0.17094 0.38622 0.56596 1.21413 1.46385 1.47840 1.57238 1.73241 2.28198 2.47559 2.48889 2.94418 3.22576 3.31920 3.42251 3.59048 3.73071 3.78329 3.99223 4.03788 4.05463 4.15357 4.20802 4.33424 4.40674 4.44692 4.54991 4.63457 4.65318 4.82124 4.88996 4.91409 4.96335 5.01975 5.05224 5.19576 5.23960 5.28022 5.28691 5.38009 5.57064 5.64486 5.71242 5.80315 5.95933 6.22626 6.40704 6.77847 6.93638 7.08990 7.44443 7.62890 8.59168 9.27942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.002395 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.853239 B =11687.888915 C =12361.817037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 H 0.057 0.943 4 N -0.701 5.701 5 C 0.589 3.411 6 O -0.576 6.576 7 C -0.311 4.311 8 C 0.147 3.853 9 N -0.444 5.444 10 H 0.463 0.537 11 N -0.300 5.300 12 C 0.157 3.843 13 C -0.097 4.097 14 C -0.053 4.053 15 C -0.176 4.176 16 C 0.096 3.904 17 N -0.521 5.521 18 C 0.148 3.852 19 C -0.105 4.105 20 C 0.169 3.831 21 N -0.644 5.644 22 C -0.235 4.235 23 H 0.083 0.917 24 C -0.068 4.068 25 N -0.953 5.953 26 Si 0.977 3.023 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.265 1.265 30 C 0.128 3.872 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.413 0.587 35 H 0.240 0.760 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.110 0.890 41 H 0.007 0.993 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.067 0.933 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -6.890 -26.605 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.061 3.939 3 H 0.075 0.925 4 N -0.352 5.352 5 C 0.378 3.622 6 O -0.457 6.457 7 C -0.326 4.326 8 C -0.005 4.005 9 N -0.151 5.151 10 H 0.312 0.688 11 N -0.122 5.122 12 C -0.011 4.011 13 C -0.101 4.101 14 C -0.080 4.080 15 C -0.195 4.195 16 C -0.061 4.061 17 N -0.230 5.230 18 C -0.010 4.010 19 C -0.125 4.125 20 C 0.043 3.957 21 N -0.371 5.371 22 C -0.364 4.364 23 H 0.101 0.899 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.806 3.194 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.189 1.189 30 C 0.003 3.997 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.168 0.832 37 H 0.190 0.810 38 H 0.200 0.800 39 H 0.174 0.826 40 H 0.128 0.872 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.351 -5.993 -27.095 27.752 hybrid contribution 1.079 -0.649 1.680 2.099 sum 1.429 -6.642 -25.415 26.308 Atomic orbital electron populations 1.22037 0.94237 1.02990 1.01641 1.20677 0.94504 0.95800 0.82920 0.92472 1.45642 1.66951 1.14350 1.08231 1.17436 0.76448 0.85796 0.82541 1.90755 1.52875 1.17171 1.84939 1.21246 1.21883 0.95210 0.94283 1.23703 0.91397 0.96039 0.89379 1.45993 1.50523 1.11485 1.07141 0.68777 1.77260 1.24106 0.92156 1.18638 1.21621 0.96316 0.92514 0.90681 1.18860 0.99290 0.91214 1.00764 1.21896 0.97682 0.95103 0.93336 1.22396 0.99487 0.95018 1.02640 1.23477 0.90803 1.01086 0.90739 1.67781 1.30832 1.09875 1.14505 1.23219 0.94553 0.89542 0.93716 1.23420 0.95861 1.00397 0.92776 1.22143 0.88211 0.93663 0.91727 1.46511 1.17006 1.72270 1.01277 1.19442 0.97280 1.35704 0.83965 0.89898 1.25633 0.98316 1.01473 1.00684 1.70013 1.18806 1.47008 1.24410 0.85080 0.77271 0.77909 0.79173 1.21885 1.21900 1.18937 1.22674 0.94966 0.98466 0.83554 0.90571 0.92376 0.92887 0.75050 0.74386 0.83183 0.80959 0.80035 0.82626 0.87168 0.97513 0.93697 0.94272 0.91522 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.43 71.98 0.68 -3.30 16 2 C 0.17 4.80 2.29 44.99 0.10 4.90 16 3 H 0.06 2.06 7.49 -2.39 -0.02 2.04 16 4 N -0.70 -15.30 4.94 -445.94 -2.20 -17.50 16 5 C 0.59 15.32 7.65 86.62 0.66 15.99 16 6 O -0.58 -19.89 12.14 -4.09 -0.05 -19.94 16 7 C -0.31 -6.41 6.27 -18.78 -0.12 -6.53 16 8 C 0.15 1.48 11.50 84.27 0.97 2.45 16 9 N -0.44 -4.55 7.20 -56.43 -0.41 -4.96 16 10 H 0.46 0.97 8.96 -213.54 -1.91 -0.95 16 11 N -0.30 -5.83 12.64 -44.53 -0.56 -6.39 16 12 C 0.16 3.71 6.96 44.08 0.31 4.01 16 13 C -0.10 -2.52 5.74 -19.96 -0.11 -2.63 16 14 C -0.05 -1.10 9.92 22.69 0.23 -0.87 16 15 C -0.18 -3.03 10.10 22.33 0.23 -2.80 16 16 C 0.10 2.01 11.17 84.70 0.95 2.95 16 17 N -0.52 -15.13 10.35 -194.92 -2.02 -17.15 16 18 C 0.15 4.40 8.96 84.97 0.76 5.16 16 19 C -0.10 -3.47 3.35 -10.13 -0.03 -3.50 16 20 C 0.17 7.91 7.03 86.44 0.61 8.51 16 21 N -0.64 -32.75 3.70 -716.16 -2.65 -35.40 16 22 C -0.24 -13.21 10.69 84.03 0.90 -12.31 16 23 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 24 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 25 N -0.95 -57.95 11.43 21.65 0.25 -57.71 16 26 Si 0.98 45.70 29.56 68.60 2.03 47.73 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 30 C 0.13 4.84 8.38 86.49 0.73 5.57 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 5.73 7.56 -92.71 -0.70 5.03 16 35 H 0.24 -0.12 7.48 -2.91 -0.02 -0.14 16 36 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.16 5.08 5.69 -2.91 -0.02 5.07 16 40 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.01 0.35 8.04 -2.39 -0.02 0.34 16 42 H 0.04 2.34 7.20 -2.39 -0.02 2.33 16 43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -84.29 379.77 0.13 -84.17 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -1.57 Total: 13.00 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.31 Total: 14.17 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -7.59 Total: -139.12 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -84.29 0.13 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970592499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.446 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds