Wall clock time and date at job start Wed Apr 1 2020 00:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46843 * 2 1 4 4 N 1.46497 * 109.47680 * 119.99780 * 2 1 3 5 5 C 1.34775 * 119.99912 * 275.00607 * 4 2 1 6 6 O 1.21610 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47427 * 120.00128 * 179.97438 * 5 4 2 8 8 C 1.41370 * 126.40207 * 0.02562 * 7 5 4 9 9 N 1.30449 * 108.07198 * 180.02562 * 8 7 5 10 10 N 1.39930 * 108.92057 * 359.97438 * 9 8 7 11 11 C 1.39910 * 125.77911 * 180.02562 * 10 9 8 12 12 C 1.39329 * 120.85382 * 179.70202 * 11 10 9 13 13 C 1.38013 * 119.07663 * 179.71002 * 12 11 10 14 14 N 1.31938 * 120.83353 * 0.57257 * 13 12 11 15 15 C 1.31939 * 121.88163 * 359.72154 * 14 13 12 16 16 C 1.37999 * 120.83551 * 359.97154 * 15 14 13 17 17 C 1.34608 * 108.44539 * 359.73262 * 10 9 8 18 18 C 1.53003 * 109.47353 * 240.00253 * 2 1 3 19 19 C 1.53948 * 113.74135 * 158.73573 * 18 2 1 20 20 N 1.47816 * 86.03525 * 222.08322 * 19 18 2 21 21 C 1.36934 * 134.45589 * 204.64782 * 20 19 18 22 22 H 1.07995 * 119.99721 * 173.34814 * 21 20 19 23 23 C 1.38817 * 119.99982 * 353.34604 * 21 20 19 24 24 N 1.31624 * 119.99959 * 5.06398 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 185.06437 * 23 21 20 26 26 H 1.48505 * 109.46961 * 94.98383 * 25 23 21 27 27 H 1.48495 * 109.47248 * 214.98714 * 25 23 21 28 28 H 1.48497 * 109.47185 * 334.98979 * 25 23 21 29 29 C 1.47581 * 91.05057 * 24.55173 * 20 19 18 30 30 H 1.08995 * 109.47297 * 60.00279 * 1 2 3 31 31 H 1.08999 * 109.47328 * 299.99539 * 1 2 3 32 32 H 1.09004 * 109.46486 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99950 * 95.00058 * 4 2 1 34 34 H 1.07996 * 125.96629 * 359.95696 * 8 7 5 35 35 H 1.07995 * 120.46524 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.58425 * 180.29126 * 13 12 11 37 37 H 1.08000 * 119.57803 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.46107 * 180.02562 * 16 15 14 39 39 H 1.07999 * 126.31506 * 180.26052 * 17 10 9 40 40 H 1.08999 * 112.94244 * 290.32901 * 18 2 1 41 41 H 1.08998 * 113.77232 * 336.35047 * 19 18 2 42 42 H 1.09006 * 113.76605 * 107.74487 * 19 18 2 43 43 H 0.96993 * 120.00066 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.76929 * 221.15554 * 29 20 19 45 45 H 1.08994 * 113.87188 * 89.76560 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1471 -0.0181 2.3571 6 8 1.8582 1.1619 2.4116 7 6 2.6381 -0.7131 3.5610 8 6 3.0114 -2.0737 3.6506 9 7 3.3895 -2.3097 4.8766 10 7 3.2790 -1.1296 5.6206 11 6 3.5934 -0.9848 6.9762 12 6 3.4498 0.2447 7.6156 13 6 3.7649 0.3447 8.9555 14 7 4.2074 -0.7018 9.6261 15 6 4.3624 -1.8809 9.0547 16 6 4.0635 -2.0650 7.7201 17 6 2.8253 -0.1558 4.8096 18 6 2.0400 -0.7212 -1.2493 19 6 3.4848 -0.3519 -1.6317 20 7 2.9978 -0.3175 -3.0269 21 6 3.5874 -0.4755 -4.2527 22 1 2.9789 -0.5089 -5.1443 23 6 4.9673 -0.5929 -4.3492 24 7 5.7006 -0.6524 -3.2578 25 14 5.7832 -0.6661 -6.0279 26 1 6.2263 0.6952 -6.4227 27 1 6.9588 -1.5714 -5.9678 28 1 4.8132 -1.1802 -7.0278 29 6 1.6213 -0.0471 -2.5685 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2492 -1.6316 1.1526 34 1 2.9867 -2.7926 2.8451 35 1 3.0928 1.1065 7.0714 36 1 3.6521 1.2927 9.4605 37 1 4.7270 -2.7128 9.6391 38 1 4.1923 -3.0329 7.2586 39 1 2.6389 0.8715 5.0859 40 1 1.8529 -1.7948 -1.2263 41 1 3.8047 0.6193 -1.2540 42 1 4.2072 -1.1445 -1.4367 43 1 6.6647 -0.7348 -3.3252 44 1 0.8586 -0.5970 -3.1199 45 1 1.3908 1.0132 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970652712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:26 Heat of formation + Delta-G solvation = 140.024178 kcal Electronic energy + Delta-G solvation = -27981.487036 eV Core-core repulsion = 24002.939346 eV Total energy + Delta-G solvation = -3978.547689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17174 -40.41883 -39.44739 -37.94343 -34.90021 -34.73875 -32.24064 -32.03021 -31.04652 -30.85019 -29.68956 -27.51440 -25.33517 -24.63007 -24.35206 -23.92281 -22.69731 -21.57765 -20.94840 -20.20018 -19.44074 -18.63899 -17.02990 -16.71592 -16.56469 -16.35232 -16.03741 -15.92852 -15.46386 -14.88629 -14.69899 -14.66265 -14.30271 -14.20703 -14.02850 -13.83420 -13.51280 -13.16875 -13.02597 -12.43558 -12.36415 -12.12176 -11.66678 -11.51222 -11.38358 -11.29556 -11.29103 -10.90488 -10.73007 -10.34940 -10.16596 -9.99677 -9.80457 -9.77701 -9.75661 -9.73416 -9.40336 -8.99062 -8.78863 -8.71810 -6.85843 -5.78076 -3.09094 0.12715 0.52688 1.51741 1.67254 1.87739 3.26367 3.28592 3.39064 3.41987 3.44255 3.46163 3.83620 3.90652 4.11617 4.35133 4.38602 4.45571 4.57373 4.74915 4.86842 4.95153 5.06531 5.16249 5.22058 5.26445 5.29824 5.37759 5.47837 5.53816 5.67025 5.80803 5.93747 5.95211 5.98117 6.04358 6.26023 6.36558 6.41733 6.44754 6.59784 6.67580 6.80845 7.02104 7.23800 7.35854 7.40192 7.56722 7.68078 7.97969 8.35842 9.04692 9.70953 10.61194 11.39630 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002003 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.303161 B =13977.642969 C =14907.007857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.593 3.407 6 O -0.549 6.549 7 C -0.267 4.267 8 C 0.100 3.900 9 N -0.287 5.287 10 N -0.321 5.321 11 C 0.205 3.795 12 C -0.196 4.196 13 C 0.129 3.871 14 N -0.493 5.493 15 C 0.124 3.876 16 C -0.172 4.172 17 C 0.126 3.874 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.130 3.870 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.202 0.798 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.194 0.806 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 -2.397 23.830 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.379 3.621 6 O -0.428 6.428 7 C -0.281 4.281 8 C -0.090 4.090 9 N -0.104 5.104 10 N -0.095 5.095 11 C 0.105 3.895 12 C -0.219 4.219 13 C -0.028 4.028 14 N -0.203 5.203 15 C -0.032 4.032 16 C -0.194 4.194 17 C -0.019 4.019 18 C -0.167 4.167 19 C 0.048 3.952 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.003 3.997 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.218 0.782 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.211 0.789 40 H 0.106 0.894 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.814 -2.388 25.362 26.370 hybrid contribution 0.209 0.113 -2.562 2.573 sum -6.605 -2.275 22.800 23.847 Atomic orbital electron populations 1.22134 0.95654 1.01764 1.02114 1.21105 0.93451 0.97616 0.83044 0.89333 1.45847 1.66776 1.13969 1.09372 1.17086 0.77113 0.85866 0.82000 1.90777 1.51497 1.15368 1.85130 1.20499 1.17232 0.94936 0.95417 1.24390 0.94333 0.95533 0.94744 1.77273 1.24516 1.03774 1.04812 1.45579 1.48980 1.08039 1.06862 1.17827 0.96453 0.95244 0.80022 1.21970 1.05941 0.96606 0.97337 1.22703 0.92428 0.97799 0.89900 1.67731 1.13228 0.99769 1.39554 1.22781 0.94014 0.95105 0.91331 1.21979 1.02098 0.99766 0.95541 1.23057 0.94006 0.95471 0.89396 1.23843 1.00949 0.99655 0.92303 1.22235 0.91181 0.98457 0.83282 1.45986 1.03529 1.82420 1.01978 1.19027 0.89830 1.42816 0.83427 0.90236 1.24825 0.95943 1.02459 0.97225 1.69831 1.04843 1.55981 1.25961 0.86142 0.79106 0.77442 0.83361 1.21646 1.21734 1.20552 1.22494 0.89721 0.96628 0.90836 0.91404 0.92750 0.92729 0.76761 0.78174 0.83657 0.81509 0.81622 0.83084 0.78935 0.89383 0.95427 0.91480 0.93666 0.93804 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.31 37.16 0.35 -1.67 16 2 C 0.15 2.25 2.38 -67.93 -0.16 2.09 16 3 H 0.09 1.53 7.41 -51.93 -0.39 1.15 16 4 N -0.71 -9.13 5.07 -54.88 -0.28 -9.41 16 5 C 0.59 8.24 7.78 -12.52 -0.10 8.15 16 6 O -0.55 -9.41 16.56 5.27 0.09 -9.32 16 7 C -0.27 -3.07 6.13 -105.05 -0.64 -3.72 16 8 C 0.10 1.00 11.50 -16.95 -0.19 0.80 16 9 N -0.29 -3.18 11.87 30.88 0.37 -2.82 16 10 N -0.32 -3.32 3.76 -10.03 -0.04 -3.36 16 11 C 0.21 1.83 6.73 -83.36 -0.56 1.27 16 12 C -0.20 -1.35 9.52 -39.26 -0.37 -1.72 16 13 C 0.13 0.84 11.17 -17.59 -0.20 0.65 16 14 N -0.49 -4.03 10.36 -13.32 -0.14 -4.17 16 15 C 0.12 0.87 11.17 -17.59 -0.20 0.68 16 16 C -0.17 -1.37 9.73 -39.26 -0.38 -1.75 16 17 C 0.13 1.30 10.64 -16.42 -0.17 1.12 16 18 C -0.15 -2.53 3.47 -89.69 -0.31 -2.84 16 19 C 0.17 3.97 6.99 -2.83 -0.02 3.95 16 20 N -0.61 -15.53 3.70 -177.69 -0.66 -16.19 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.28 11.51 55.49 0.64 -26.64 16 25 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 C 0.13 2.55 7.64 -2.97 -0.02 2.52 16 30 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 4.14 7.56 -40.82 -0.31 3.83 16 34 H 0.20 1.36 7.50 -52.49 -0.39 0.97 16 35 H 0.15 0.69 6.85 -52.49 -0.36 0.34 16 36 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.14 7.78 -52.48 -0.41 0.73 16 39 H 0.19 1.53 7.09 -52.49 -0.37 1.15 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 42 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -35.94 384.05 -8.42 -44.36 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.92 Total: 1.85 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.25 Total: 2.79 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.11 Total: -62.59 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.94 -8.42 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970652712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.381 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds