Wall clock time and date at job start Wed Apr 1 2020 00:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46843 * 2 1 4 4 N 1.46497 * 109.47680 * 119.99780 * 2 1 3 5 5 C 1.34775 * 119.99912 * 275.00607 * 4 2 1 6 6 O 1.21610 * 120.00260 * 359.97438 * 5 4 2 7 7 C 1.47427 * 120.00128 * 179.97438 * 5 4 2 8 8 C 1.41370 * 126.40207 * 0.02562 * 7 5 4 9 9 N 1.30449 * 108.07198 * 180.02562 * 8 7 5 10 10 N 1.39930 * 108.92057 * 359.97438 * 9 8 7 11 11 C 1.39910 * 125.77911 * 180.02562 * 10 9 8 12 12 C 1.39329 * 120.85382 * 179.70202 * 11 10 9 13 13 C 1.38013 * 119.07663 * 179.71002 * 12 11 10 14 14 N 1.31938 * 120.83353 * 0.57257 * 13 12 11 15 15 C 1.31939 * 121.88163 * 359.72154 * 14 13 12 16 16 C 1.37999 * 120.83551 * 359.97154 * 15 14 13 17 17 C 1.34608 * 108.44539 * 359.73262 * 10 9 8 18 18 C 1.53003 * 109.47353 * 240.00253 * 2 1 3 19 19 C 1.53948 * 113.74135 * 158.73573 * 18 2 1 20 20 N 1.47816 * 86.03525 * 222.08322 * 19 18 2 21 21 C 1.36934 * 134.45589 * 204.64782 * 20 19 18 22 22 H 1.07995 * 119.99721 * 173.34814 * 21 20 19 23 23 C 1.38817 * 119.99982 * 353.34604 * 21 20 19 24 24 N 1.31624 * 119.99959 * 5.06398 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 185.06437 * 23 21 20 26 26 H 1.48505 * 109.46961 * 94.98383 * 25 23 21 27 27 H 1.48495 * 109.47248 * 214.98714 * 25 23 21 28 28 H 1.48497 * 109.47185 * 334.98979 * 25 23 21 29 29 C 1.47581 * 91.05057 * 24.55173 * 20 19 18 30 30 H 1.08995 * 109.47297 * 60.00279 * 1 2 3 31 31 H 1.08999 * 109.47328 * 299.99539 * 1 2 3 32 32 H 1.09004 * 109.46486 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99950 * 95.00058 * 4 2 1 34 34 H 1.07996 * 125.96629 * 359.95696 * 8 7 5 35 35 H 1.07995 * 120.46524 * 359.97438 * 12 11 10 36 36 H 1.07998 * 119.58425 * 180.29126 * 13 12 11 37 37 H 1.08000 * 119.57803 * 180.02562 * 15 14 13 38 38 H 1.08004 * 120.46107 * 180.02562 * 16 15 14 39 39 H 1.07999 * 126.31506 * 180.26052 * 17 10 9 40 40 H 1.08999 * 112.94244 * 290.32901 * 18 2 1 41 41 H 1.08998 * 113.77232 * 336.35047 * 19 18 2 42 42 H 1.09006 * 113.76605 * 107.74487 * 19 18 2 43 43 H 0.96993 * 120.00066 * 179.97438 * 24 23 21 44 44 H 1.09003 * 113.76929 * 221.15554 * 29 20 19 45 45 H 1.08994 * 113.87188 * 89.76560 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1471 -0.0181 2.3571 6 8 1.8582 1.1619 2.4116 7 6 2.6381 -0.7131 3.5610 8 6 3.0114 -2.0737 3.6506 9 7 3.3895 -2.3097 4.8766 10 7 3.2790 -1.1296 5.6206 11 6 3.5934 -0.9848 6.9762 12 6 3.4498 0.2447 7.6156 13 6 3.7649 0.3447 8.9555 14 7 4.2074 -0.7018 9.6261 15 6 4.3624 -1.8809 9.0547 16 6 4.0635 -2.0650 7.7201 17 6 2.8253 -0.1558 4.8096 18 6 2.0400 -0.7212 -1.2493 19 6 3.4848 -0.3519 -1.6317 20 7 2.9978 -0.3175 -3.0269 21 6 3.5874 -0.4755 -4.2527 22 1 2.9789 -0.5089 -5.1443 23 6 4.9673 -0.5929 -4.3492 24 7 5.7006 -0.6524 -3.2578 25 14 5.7832 -0.6661 -6.0279 26 1 6.2263 0.6952 -6.4227 27 1 6.9588 -1.5714 -5.9678 28 1 4.8132 -1.1802 -7.0278 29 6 1.6213 -0.0471 -2.5685 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 2.2492 -1.6316 1.1526 34 1 2.9867 -2.7926 2.8451 35 1 3.0928 1.1065 7.0714 36 1 3.6521 1.2927 9.4605 37 1 4.7270 -2.7128 9.6391 38 1 4.1923 -3.0329 7.2586 39 1 2.6389 0.8715 5.0859 40 1 1.8529 -1.7948 -1.2263 41 1 3.8047 0.6193 -1.2540 42 1 4.2072 -1.1445 -1.4367 43 1 6.6647 -0.7348 -3.3252 44 1 0.8586 -0.5970 -3.1199 45 1 1.3908 1.0132 -2.4662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970652712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:25 Heat of formation + Delta-G solvation = 115.788915 kcal Electronic energy + Delta-G solvation = -27982.537955 eV Core-core repulsion = 24002.939346 eV Total energy + Delta-G solvation = -3979.598609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.93202 -41.09424 -40.61004 -39.44380 -36.13299 -35.53822 -34.15287 -32.61939 -32.17836 -31.55421 -30.65782 -29.30901 -26.69295 -25.86925 -25.38120 -24.94865 -23.74632 -22.52202 -22.04045 -21.28578 -20.63008 -19.66952 -18.72973 -17.87310 -17.32210 -17.16838 -16.89317 -16.79992 -16.76798 -16.23505 -15.74447 -15.71417 -15.44389 -15.23600 -14.81689 -14.78854 -14.71389 -14.54981 -14.06338 -13.89772 -13.40375 -13.24892 -13.05454 -12.94531 -12.87328 -12.66883 -12.52895 -12.24566 -12.10039 -11.95774 -11.70568 -11.45731 -11.22394 -10.93395 -10.85571 -10.68638 -10.53594 -10.31924 -10.03689 -9.61128 -8.88921 -7.91329 -5.23164 -0.54223 0.00869 0.71974 0.95893 1.10089 1.45081 1.47217 1.55893 2.24366 2.40484 2.48033 2.72669 3.13776 3.29824 3.42035 3.44698 3.48758 3.71101 3.77377 3.82375 3.93242 4.01878 4.02672 4.16122 4.35508 4.40377 4.46533 4.57027 4.64421 4.66863 4.76051 4.78953 4.87744 4.89129 4.92367 5.06429 5.16150 5.24689 5.28424 5.39712 5.43020 5.52340 5.60376 5.71241 5.76381 5.95055 6.24917 6.65380 6.87219 6.92928 7.30554 7.61980 8.58849 9.26335 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002003 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.303161 B =13977.642969 C =14907.007857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.162 3.838 3 H 0.061 0.939 4 N -0.704 5.704 5 C 0.595 3.405 6 O -0.587 6.587 7 C -0.288 4.288 8 C 0.105 3.895 9 N -0.308 5.308 10 N -0.321 5.321 11 C 0.178 3.822 12 C -0.192 4.192 13 C 0.127 3.873 14 N -0.513 5.513 15 C 0.123 3.877 16 C -0.179 4.179 17 C 0.132 3.868 18 C -0.108 4.108 19 C 0.170 3.830 20 N -0.645 5.645 21 C -0.233 4.233 22 H 0.085 0.915 23 C -0.070 4.070 24 N -0.953 5.953 25 Si 0.976 3.024 26 H -0.291 1.291 27 H -0.294 1.294 28 H -0.264 1.264 29 C 0.129 3.871 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.228 0.772 35 H 0.166 0.834 36 H 0.196 0.804 37 H 0.190 0.810 38 H 0.150 0.850 39 H 0.213 0.787 40 H 0.108 0.892 41 H 0.003 0.997 42 H 0.038 0.962 43 H 0.247 0.753 44 H 0.065 0.935 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 -2.900 24.441 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 H 0.079 0.921 4 N -0.354 5.354 5 C 0.383 3.617 6 O -0.468 6.468 7 C -0.302 4.302 8 C -0.084 4.084 9 N -0.125 5.125 10 N -0.094 5.094 11 C 0.078 3.922 12 C -0.215 4.215 13 C -0.029 4.029 14 N -0.222 5.222 15 C -0.033 4.033 16 C -0.200 4.200 17 C -0.015 4.015 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.372 5.372 21 C -0.361 4.361 22 H 0.103 0.897 23 C -0.263 4.263 24 N -0.602 5.602 25 Si 0.804 3.196 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.189 1.189 29 C 0.004 3.996 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.248 0.752 34 H 0.244 0.756 35 H 0.183 0.817 36 H 0.213 0.787 37 H 0.207 0.793 38 H 0.168 0.832 39 H 0.229 0.771 40 H 0.126 0.874 41 H 0.021 0.979 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.205 -2.925 25.991 27.412 hybrid contribution 0.617 0.312 -2.651 2.739 sum -7.588 -2.613 23.341 24.682 Atomic orbital electron populations 1.22050 0.93274 1.03169 1.02264 1.20827 0.95057 0.95833 0.82622 0.92125 1.45713 1.66522 1.14556 1.08622 1.17335 0.76350 0.85405 0.82600 1.90752 1.53309 1.16994 1.85765 1.20331 1.19172 0.95730 0.94976 1.24806 0.93181 0.95379 0.95064 1.77243 1.25392 1.04594 1.05270 1.45692 1.48541 1.07756 1.07365 1.18203 0.97862 0.96509 0.79636 1.22241 1.05160 0.96504 0.97564 1.23213 0.91353 0.98518 0.89850 1.67793 1.13780 1.00450 1.40223 1.23160 0.93390 0.95603 0.91129 1.22077 1.02321 0.99661 0.95990 1.23401 0.92753 0.96234 0.89114 1.23461 0.96031 1.00720 0.92593 1.22122 0.93965 0.96344 0.83068 1.46426 1.06150 1.82675 1.01933 1.19453 0.90339 1.41442 0.84908 0.89688 1.25665 0.96729 1.03178 1.00704 1.70019 1.04506 1.57754 1.27940 0.85094 0.77991 0.76972 0.79533 1.21862 1.22122 1.18851 1.22695 0.87637 0.97548 0.91723 0.90815 0.93087 0.90649 0.75165 0.75593 0.81691 0.78692 0.79274 0.83198 0.77055 0.87357 0.97924 0.94326 0.94379 0.91657 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.31 71.98 0.67 -2.77 16 2 C 0.16 4.60 2.38 44.99 0.11 4.71 16 3 H 0.06 2.11 7.41 -2.39 -0.02 2.09 16 4 N -0.70 -17.40 5.07 -445.80 -2.26 -19.66 16 5 C 0.60 16.29 7.78 86.66 0.67 16.96 16 6 O -0.59 -20.16 16.56 -4.06 -0.07 -20.23 16 7 C -0.29 -6.43 6.13 -20.14 -0.12 -6.56 16 8 C 0.10 2.00 11.50 85.67 0.99 2.98 16 9 N -0.31 -6.62 11.87 -56.22 -0.67 -7.29 16 10 N -0.32 -6.40 3.76 -185.66 -0.70 -7.10 16 11 C 0.18 3.03 6.73 38.38 0.26 3.28 16 12 C -0.19 -2.36 9.52 22.48 0.21 -2.14 16 13 C 0.13 1.44 11.17 84.62 0.95 2.39 16 14 N -0.51 -7.63 10.36 -196.06 -2.03 -9.66 16 15 C 0.12 1.60 11.17 84.62 0.95 2.54 16 16 C -0.18 -2.74 9.73 22.47 0.22 -2.52 16 17 C 0.13 2.60 10.64 84.21 0.90 3.50 16 18 C -0.11 -3.59 3.47 -10.13 -0.04 -3.62 16 19 C 0.17 7.96 6.99 86.44 0.60 8.56 16 20 N -0.65 -32.76 3.70 -716.07 -2.65 -35.41 16 21 C -0.23 -13.07 10.70 84.04 0.90 -12.17 16 22 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 24 N -0.95 -58.12 11.51 21.65 0.25 -57.87 16 25 Si 0.98 45.97 29.56 68.60 2.03 47.99 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 29 C 0.13 4.87 7.64 86.49 0.66 5.53 16 30 H 0.07 1.62 7.52 -2.39 -0.02 1.60 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.41 7.88 7.56 -92.71 -0.70 7.18 16 34 H 0.23 2.69 7.50 -2.91 -0.02 2.67 16 35 H 0.17 1.24 6.85 -2.91 -0.02 1.22 16 36 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.15 2.25 7.78 -2.91 -0.02 2.22 16 39 H 0.21 3.11 7.09 -2.91 -0.02 3.09 16 40 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.00 0.15 7.99 -2.39 -0.02 0.13 16 42 H 0.04 2.00 7.37 -2.38 -0.02 1.98 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -79.42 384.05 2.62 -76.80 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.33 Total: 15.28 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 8.39 Total: 17.13 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -8.06 Total: -136.98 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.07 Total: -20.23 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.42 2.62 -76.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970652712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.592 kcal (2) G-P(sol) polarization free energy of solvation -79.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds