Wall clock time and date at job start Wed Apr 1 2020 00:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21601 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47422 * 120.00065 * 180.02562 * 5 4 2 8 8 C 1.41365 * 126.40714 * 0.02562 * 7 5 4 9 9 N 1.30443 * 108.07876 * 179.97438 * 8 7 5 10 10 N 1.39930 * 108.91485 * 0.02562 * 9 8 7 11 11 C 1.39913 * 125.77831 * 180.02562 * 10 9 8 12 12 C 1.39326 * 120.85800 * 179.69454 * 11 10 9 13 13 C 1.38007 * 119.07684 * 179.75909 * 12 11 10 14 14 N 1.31936 * 120.83687 * 0.53313 * 13 12 11 15 15 C 1.31936 * 121.88549 * 359.73913 * 14 13 12 16 16 C 1.38010 * 120.83116 * 359.97438 * 15 14 13 17 17 C 1.34601 * 108.44729 * 359.75135 * 10 9 8 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08014 * 125.96001 * 359.96161 * 8 7 5 35 35 H 1.07991 * 120.46141 * 0.02562 * 12 11 10 36 36 H 1.08010 * 119.58531 * 180.25317 * 13 12 11 37 37 H 1.07996 * 119.58949 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.46120 * 180.02562 * 16 15 14 39 39 H 1.08005 * 126.31135 * 180.26702 * 17 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1616 -2.4116 7 6 2.6380 -0.7134 -3.5609 8 6 3.0103 -2.0742 -3.6509 9 7 3.3887 -2.3101 -4.8767 10 7 3.2794 -1.1298 -5.6203 11 6 3.5934 -0.9851 -6.9761 12 6 3.4393 0.2416 -7.6183 13 6 3.7649 0.3442 -8.9555 14 7 4.2067 -0.7025 -9.6262 15 6 4.3609 -1.8818 -9.0551 16 6 4.0629 -2.0656 -7.7201 17 6 2.8153 -0.1587 -4.8121 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.9860 -2.7930 -2.8451 35 1 3.0741 1.1013 -7.0763 36 1 3.6525 1.2923 -9.4605 37 1 4.7249 -2.7139 -9.6395 38 1 4.1918 -3.0334 -7.2585 39 1 2.6194 0.8662 -5.0910 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970652715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:29 Heat of formation + Delta-G solvation = 148.692701 kcal Electronic energy + Delta-G solvation = -28113.821369 eV Core-core repulsion = 24135.649575 eV Total energy + Delta-G solvation = -3978.171794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27838 -40.50624 -39.70923 -38.43488 -35.07610 -34.91858 -32.46568 -32.10713 -31.28292 -30.94852 -29.88271 -27.75912 -25.63090 -25.01713 -24.43432 -23.86873 -22.65298 -21.64566 -20.88061 -20.36799 -19.61740 -18.90034 -17.49084 -17.13406 -16.67083 -16.48254 -16.18969 -16.09057 -15.58778 -15.32028 -14.84787 -14.77677 -14.39676 -14.33625 -14.19459 -13.86165 -13.74172 -13.29773 -13.17366 -12.96915 -12.44210 -12.32399 -11.91936 -11.84450 -11.64819 -11.48986 -11.43276 -10.94905 -10.67545 -10.36391 -10.30151 -10.21826 -9.93230 -9.87213 -9.85762 -9.29567 -9.14443 -9.07119 -8.91099 -8.85689 -7.17147 -6.30028 -3.24108 0.04229 0.45914 1.41158 1.57158 1.76426 3.12269 3.19120 3.27527 3.38955 3.44473 3.64111 3.73467 3.84138 4.02884 4.25308 4.29941 4.49316 4.58921 4.61497 4.70200 4.76449 4.86834 4.88216 5.05251 5.09800 5.15413 5.24634 5.39313 5.42663 5.47452 5.57373 5.73256 5.84265 5.86681 5.89229 6.00730 6.15274 6.22678 6.26100 6.29613 6.35087 6.38433 6.57496 6.89886 6.91432 7.11600 7.33779 7.50340 8.19532 8.22949 8.96911 9.49318 10.35995 11.19839 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.002189 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.555982 B =12785.597212 C =13714.923217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.091 0.909 4 N -0.714 5.714 5 C 0.594 3.406 6 O -0.546 6.546 7 C -0.270 4.270 8 C 0.098 3.902 9 N -0.286 5.286 10 N -0.320 5.320 11 C 0.204 3.796 12 C -0.195 4.195 13 C 0.129 3.871 14 N -0.492 5.492 15 C 0.125 3.875 16 C -0.171 4.171 17 C 0.128 3.872 18 C -0.140 4.140 19 C 0.134 3.866 20 N -0.629 5.629 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.026 4.026 24 N -0.934 5.934 25 Si 1.071 2.929 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.103 3.897 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.201 0.799 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.152 0.848 39 H 0.194 0.806 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -1.811 -29.711 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.109 0.891 4 N -0.364 5.364 5 C 0.380 3.620 6 O -0.425 6.425 7 C -0.284 4.284 8 C -0.091 4.091 9 N -0.102 5.102 10 N -0.093 5.093 11 C 0.103 3.897 12 C -0.218 4.218 13 C -0.028 4.028 14 N -0.202 5.202 15 C -0.032 4.032 16 C -0.193 4.193 17 C -0.018 4.018 18 C -0.160 4.160 19 C 0.007 3.993 20 N -0.357 5.357 21 C -0.429 4.429 22 H 0.100 0.900 23 C -0.225 4.225 24 N -0.576 5.576 25 Si 0.903 3.097 26 H -0.223 1.223 27 H -0.222 1.222 28 H -0.214 1.214 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.218 0.782 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.211 0.789 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.350 -1.884 -31.705 32.208 hybrid contribution -2.000 0.183 2.213 2.989 sum -7.350 -1.701 -29.492 30.441 Atomic orbital electron populations 1.22124 0.95138 1.02023 1.02373 1.21032 0.93930 0.97492 0.82627 0.89073 1.45877 1.67088 1.14006 1.09432 1.17089 0.77057 0.85873 0.81962 1.90784 1.51290 1.15342 1.85073 1.20463 1.17582 0.95028 0.95306 1.24381 0.94521 0.95452 0.94786 1.77282 1.24481 1.03682 1.04796 1.45584 1.48640 1.08111 1.06993 1.17830 0.96633 0.95304 0.79942 1.21968 1.05819 0.96653 0.97360 1.22714 0.92355 0.97814 0.89911 1.67733 1.13210 0.99748 1.39486 1.22795 0.93940 0.95130 0.91320 1.21988 1.02093 0.99698 0.95545 1.23066 0.93766 0.95551 0.89373 1.23568 0.99042 1.00299 0.93075 1.22258 0.90061 0.97166 0.89803 1.45973 1.04083 1.83717 1.01927 1.20154 0.92125 1.47584 0.83079 0.89955 1.25722 0.94257 0.99314 1.03162 1.70912 1.37299 1.52239 0.97188 0.83708 0.75718 0.76182 0.74059 1.22278 1.22159 1.21406 1.22836 0.94751 0.98514 0.86177 0.92493 0.92533 0.91228 0.76711 0.78212 0.83656 0.81464 0.81575 0.83075 0.78883 0.88353 0.93504 0.94286 0.92943 0.93739 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.29 37.16 0.35 -1.49 16 2 C 0.15 2.04 2.47 -67.93 -0.17 1.88 16 3 H 0.09 1.40 7.32 -51.93 -0.38 1.02 16 4 N -0.71 -8.16 5.07 -54.88 -0.28 -8.44 16 5 C 0.59 7.47 7.78 -12.52 -0.10 7.37 16 6 O -0.55 -8.64 16.56 5.28 0.09 -8.55 16 7 C -0.27 -2.80 6.13 -105.05 -0.64 -3.44 16 8 C 0.10 0.88 11.50 -16.95 -0.20 0.68 16 9 N -0.29 -2.90 11.87 30.88 0.37 -2.54 16 10 N -0.32 -3.02 3.76 -10.03 -0.04 -3.06 16 11 C 0.20 1.66 6.73 -83.36 -0.56 1.10 16 12 C -0.20 -1.21 9.52 -39.26 -0.37 -1.58 16 13 C 0.13 0.77 11.17 -17.59 -0.20 0.57 16 14 N -0.49 -3.75 10.36 -13.32 -0.14 -3.88 16 15 C 0.12 0.80 11.17 -17.59 -0.20 0.61 16 16 C -0.17 -1.25 9.73 -39.26 -0.38 -1.63 16 17 C 0.13 1.19 10.64 -16.42 -0.17 1.02 16 18 C -0.14 -2.19 3.67 -89.96 -0.33 -2.52 16 19 C 0.13 2.51 7.33 -8.50 -0.06 2.44 16 20 N -0.63 -15.26 3.69 -184.57 -0.68 -15.94 16 21 C -0.30 -8.74 11.08 -15.06 -0.17 -8.90 16 22 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 23 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 24 N -0.93 -29.61 13.70 55.49 0.76 -28.85 16 25 Si 1.07 26.95 25.16 -169.99 -4.28 22.68 16 26 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 27 H -0.29 -6.88 6.51 56.52 0.37 -6.51 16 28 H -0.29 -6.84 6.21 56.52 0.35 -6.48 16 29 C 0.10 2.11 5.27 -8.36 -0.04 2.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.79 7.48 -51.93 -0.39 0.40 16 33 H 0.40 3.52 7.56 -40.82 -0.31 3.22 16 34 H 0.20 1.12 7.50 -52.48 -0.39 0.73 16 35 H 0.15 0.59 6.85 -52.49 -0.36 0.23 16 36 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.15 1.04 7.78 -52.49 -0.41 0.63 16 39 H 0.19 1.34 7.09 -52.48 -0.37 0.97 16 40 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 44 H 0.05 0.93 7.44 -51.93 -0.39 0.55 16 45 H 0.05 1.08 4.73 -51.93 -0.25 0.84 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -37.22 376.31 -7.73 -44.95 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.86 Total: 0.66 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -3.34 Total: -2.70 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.01 Total: -62.71 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.28 Total: 22.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.22 -7.73 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970652715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.645 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds