Wall clock time and date at job start Wed Apr 1 2020 00:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46502 * 2 1 4 4 N 1.46496 * 109.47421 * 239.99670 * 2 1 3 5 5 C 1.34780 * 119.99734 * 84.99427 * 4 2 1 6 6 O 1.21601 * 119.99933 * 0.02562 * 5 4 2 7 7 C 1.47422 * 120.00065 * 180.02562 * 5 4 2 8 8 C 1.41365 * 126.40714 * 0.02562 * 7 5 4 9 9 N 1.30443 * 108.07876 * 179.97438 * 8 7 5 10 10 N 1.39930 * 108.91485 * 0.02562 * 9 8 7 11 11 C 1.39913 * 125.77831 * 180.02562 * 10 9 8 12 12 C 1.39326 * 120.85800 * 179.69454 * 11 10 9 13 13 C 1.38007 * 119.07684 * 179.75909 * 12 11 10 14 14 N 1.31936 * 120.83687 * 0.53313 * 13 12 11 15 15 C 1.31936 * 121.88549 * 359.73913 * 14 13 12 16 16 C 1.38010 * 120.83116 * 359.97438 * 15 14 13 17 17 C 1.34601 * 108.44729 * 359.75135 * 10 9 8 18 18 C 1.52998 * 109.47133 * 119.99715 * 2 1 3 19 19 C 1.53504 * 114.20785 * 300.00220 * 18 2 1 20 20 N 1.47069 * 87.98363 * 220.34571 * 19 18 2 21 21 C 1.36941 * 136.05552 * 207.07801 * 20 19 18 22 22 H 1.08000 * 119.99396 * 7.56018 * 21 20 19 23 23 C 1.38806 * 119.99993 * 187.55101 * 21 20 19 24 24 N 1.31621 * 119.99759 * 174.37714 * 23 21 20 25 25 Si 1.86799 * 119.99972 * 354.38427 * 23 21 20 26 26 H 1.48501 * 109.46963 * 174.94900 * 25 23 21 27 27 H 1.48498 * 109.47184 * 294.94894 * 25 23 21 28 28 H 1.48507 * 109.47082 * 54.95224 * 25 23 21 29 29 C 1.47064 * 87.88742 * 27.34488 * 20 19 18 30 30 H 1.08994 * 109.46942 * 60.00572 * 1 2 3 31 31 H 1.09004 * 109.46240 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47419 * 299.99803 * 1 2 3 33 33 H 0.96996 * 120.00139 * 265.00396 * 4 2 1 34 34 H 1.08014 * 125.96001 * 359.96161 * 8 7 5 35 35 H 1.07991 * 120.46141 * 0.02562 * 12 11 10 36 36 H 1.08010 * 119.58531 * 180.25317 * 13 12 11 37 37 H 1.07996 * 119.58949 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.46120 * 180.02562 * 16 15 14 39 39 H 1.08005 * 126.31135 * 180.26702 * 17 10 9 40 40 H 1.09002 * 113.41395 * 73.19962 * 18 2 1 41 41 H 1.08997 * 113.46758 * 105.56146 * 19 18 2 42 42 H 1.09000 * 113.51898 * 335.13170 * 19 18 2 43 43 H 0.96993 * 120.00423 * 354.88754 * 24 23 21 44 44 H 1.08993 * 113.47012 * 87.43421 * 29 20 19 45 45 H 1.09000 * 113.46758 * 217.87997 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1616 -2.4116 7 6 2.6380 -0.7134 -3.5609 8 6 3.0103 -2.0742 -3.6509 9 7 3.3887 -2.3101 -4.8767 10 7 3.2794 -1.1298 -5.6203 11 6 3.5934 -0.9851 -6.9761 12 6 3.4393 0.2416 -7.6183 13 6 3.7649 0.3442 -8.9555 14 7 4.2067 -0.7025 -9.6262 15 6 4.3609 -1.8818 -9.0551 16 6 4.0629 -2.0656 -7.7201 17 6 2.8153 -0.1587 -4.8121 18 6 2.0401 -0.7212 1.2493 19 6 1.5899 -0.0845 2.5715 20 7 2.9390 -0.3444 3.0960 21 6 3.4927 -0.5600 4.3298 22 1 2.8558 -0.6814 5.1935 23 6 4.8722 -0.6227 4.4701 24 7 5.4081 -0.7189 5.6684 25 14 5.9681 -0.5704 2.9583 26 1 7.3914 -0.5289 3.3799 27 1 5.7314 -1.7821 2.1331 28 1 5.6528 0.6416 2.1600 29 6 3.4330 -0.2640 1.7131 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.9860 -2.7930 -2.8451 35 1 3.0741 1.1013 -7.0763 36 1 3.6525 1.2923 -9.4605 37 1 4.7249 -2.7139 -9.6395 38 1 4.1918 -3.0334 -7.2585 39 1 2.6194 0.8662 -5.0910 40 1 1.9119 -1.8028 1.2077 41 1 0.8095 -0.6492 3.0816 42 1 1.3545 0.9763 2.4855 43 1 4.8450 -0.6714 6.4568 44 1 3.6837 0.7494 1.3999 45 1 4.2229 -0.9818 1.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970652715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:28 Heat of formation + Delta-G solvation = 121.674849 kcal Electronic energy + Delta-G solvation = -28114.992951 eV Core-core repulsion = 24135.649575 eV Total energy + Delta-G solvation = -3979.343376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.93347 -41.15791 -40.78186 -39.73536 -36.25596 -35.54380 -34.50540 -32.63037 -32.31849 -31.55714 -30.74334 -29.44239 -27.07561 -25.93287 -25.15599 -24.93997 -23.64406 -22.46694 -22.02641 -21.35828 -20.79553 -19.77122 -19.51841 -17.95721 -17.49838 -17.19103 -17.02955 -16.80984 -16.73196 -16.28566 -15.95773 -15.67005 -15.53448 -15.29414 -15.13609 -14.85221 -14.75943 -14.68977 -14.29372 -13.92472 -13.63054 -13.26398 -13.20046 -13.08922 -12.93751 -12.50364 -12.33785 -12.24868 -12.09944 -12.08396 -11.66829 -11.30049 -11.08440 -10.97538 -10.81643 -10.68441 -10.53773 -10.31982 -10.06998 -9.61905 -9.21707 -8.61085 -5.47110 -0.53902 0.00801 0.71839 0.95814 1.10628 1.36937 1.47646 1.66229 2.21076 2.38974 2.53523 2.72630 3.00273 3.13578 3.19296 3.44440 3.48342 3.51003 3.71917 3.81673 3.88610 3.96016 4.02129 4.16279 4.25095 4.38707 4.41962 4.47854 4.53633 4.62086 4.66132 4.69804 4.72864 4.75995 4.84859 4.87882 4.92458 5.09798 5.21904 5.25187 5.35050 5.42856 5.45450 5.61293 5.76277 5.95697 6.25656 6.63424 6.70497 6.87502 7.29012 7.33285 8.28576 8.90408 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.002189 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.555982 B =12785.597212 C =13714.923217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.071 0.929 4 N -0.706 5.706 5 C 0.597 3.403 6 O -0.584 6.584 7 C -0.288 4.288 8 C 0.105 3.895 9 N -0.309 5.309 10 N -0.321 5.321 11 C 0.178 3.822 12 C -0.192 4.192 13 C 0.127 3.873 14 N -0.513 5.513 15 C 0.123 3.877 16 C -0.178 4.178 17 C 0.132 3.868 18 C -0.102 4.102 19 C 0.129 3.871 20 N -0.663 5.663 21 C -0.288 4.288 22 H 0.051 0.949 23 C -0.088 4.088 24 N -0.972 5.972 25 Si 1.109 2.891 26 H -0.307 1.307 27 H -0.263 1.263 28 H -0.269 1.269 29 C 0.092 3.908 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.230 0.770 35 H 0.166 0.834 36 H 0.196 0.804 37 H 0.190 0.810 38 H 0.151 0.849 39 H 0.212 0.788 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.246 0.754 44 H 0.043 0.957 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -2.221 -32.846 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.058 3.942 3 H 0.089 0.911 4 N -0.357 5.357 5 C 0.385 3.615 6 O -0.465 6.465 7 C -0.302 4.302 8 C -0.084 4.084 9 N -0.126 5.126 10 N -0.094 5.094 11 C 0.078 3.922 12 C -0.214 4.214 13 C -0.030 4.030 14 N -0.223 5.223 15 C -0.034 4.034 16 C -0.200 4.200 17 C -0.015 4.015 18 C -0.121 4.121 19 C 0.004 3.996 20 N -0.391 5.391 21 C -0.416 4.416 22 H 0.069 0.931 23 C -0.280 4.280 24 N -0.618 5.618 25 Si 0.935 3.065 26 H -0.236 1.236 27 H -0.189 1.189 28 H -0.195 1.195 29 C -0.032 4.032 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.246 0.754 35 H 0.184 0.816 36 H 0.212 0.788 37 H 0.206 0.794 38 H 0.168 0.832 39 H 0.229 0.771 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.265 -2.331 -34.895 35.529 hybrid contribution -1.842 0.360 3.136 3.655 sum -8.107 -1.970 -31.759 32.837 Atomic orbital electron populations 1.22060 0.93396 1.03227 1.02321 1.20768 0.95095 0.96144 0.82211 0.91100 1.45716 1.66753 1.14660 1.08561 1.17294 0.76298 0.85387 0.82518 1.90766 1.53064 1.16996 1.85678 1.20312 1.19307 0.95769 0.94855 1.24840 0.93195 0.95333 0.95059 1.77258 1.25479 1.04487 1.05379 1.45686 1.48331 1.07918 1.07419 1.18186 0.97868 0.96458 0.79687 1.22233 1.05045 0.96610 0.97515 1.23212 0.91366 0.98484 0.89947 1.67787 1.13853 1.00460 1.40216 1.23159 0.93406 0.95590 0.91198 1.22078 1.02347 0.99640 0.95939 1.23417 0.92614 0.96272 0.89189 1.23260 0.94857 1.01381 0.92633 1.22496 0.87925 0.98176 0.91036 1.46119 1.07072 1.84144 1.01798 1.20035 0.91911 1.45170 0.84467 0.93067 1.27039 0.96294 0.99843 1.04799 1.71012 1.37399 1.55685 0.97659 0.83264 0.73326 0.78143 0.71765 1.23569 1.18948 1.19461 1.23040 0.97453 0.98545 0.84200 0.92881 0.90692 0.91015 0.74940 0.75379 0.81629 0.78766 0.79363 0.83166 0.77105 0.86169 0.92525 0.93292 0.94500 0.93979 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.29 71.98 0.67 -2.36 16 2 C 0.16 3.85 2.47 44.99 0.11 3.97 16 3 H 0.07 2.03 7.32 -2.39 -0.02 2.02 16 4 N -0.71 -13.94 5.07 -445.81 -2.26 -16.20 16 5 C 0.60 13.69 7.78 86.66 0.67 14.36 16 6 O -0.58 -17.58 16.56 -4.04 -0.07 -17.65 16 7 C -0.29 -5.35 6.13 -20.14 -0.12 -5.47 16 8 C 0.10 1.61 11.50 85.67 0.99 2.60 16 9 N -0.31 -5.74 11.87 -56.22 -0.67 -6.41 16 10 N -0.32 -5.54 3.76 -185.65 -0.70 -6.24 16 11 C 0.18 2.66 6.73 38.38 0.26 2.91 16 12 C -0.19 -1.99 9.52 22.48 0.21 -1.78 16 13 C 0.13 1.25 11.17 84.62 0.95 2.19 16 14 N -0.51 -6.96 10.36 -196.06 -2.03 -9.00 16 15 C 0.12 1.41 11.17 84.62 0.95 2.36 16 16 C -0.18 -2.41 9.73 22.48 0.22 -2.19 16 17 C 0.13 2.20 10.64 84.21 0.90 3.09 16 18 C -0.10 -2.85 3.67 -10.37 -0.04 -2.89 16 19 C 0.13 4.55 7.33 83.18 0.61 5.16 16 20 N -0.66 -31.36 3.69 -737.86 -2.72 -34.09 16 21 C -0.29 -16.81 11.08 84.03 0.93 -15.88 16 22 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 23 C -0.09 -5.33 5.50 84.86 0.47 -4.86 16 24 N -0.97 -63.54 13.70 21.65 0.30 -63.24 16 25 Si 1.11 54.00 25.16 68.60 1.73 55.72 16 26 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 27 H -0.26 -11.40 6.51 99.48 0.65 -10.76 16 28 H -0.27 -12.13 6.21 99.48 0.62 -11.51 16 29 C 0.09 3.56 5.27 83.27 0.44 4.00 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.41 7.48 -2.39 -0.02 1.39 16 33 H 0.41 5.68 7.56 -92.71 -0.70 4.98 16 34 H 0.23 1.77 7.50 -2.90 -0.02 1.75 16 35 H 0.17 0.91 6.85 -2.92 -0.02 0.89 16 36 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.15 1.97 7.78 -2.91 -0.02 1.95 16 39 H 0.21 2.49 7.09 -2.91 -0.02 2.47 16 40 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 43 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 44 H 0.04 1.67 7.44 -2.39 -0.02 1.65 16 45 H 0.05 1.95 4.73 -2.39 -0.01 1.94 16 Total: -1.00 -82.84 376.31 1.92 -80.92 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.14 Total: 10.97 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 8.20 Total: 5.21 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -8.08 Total: -135.17 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.07 Total: -17.65 kcal Atomic # 14 Polarization: 54.00 SS G_CDS: 1.73 Total: 55.72 kcal Total: -82.84 1.92 -80.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970652715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.595 kcal (2) G-P(sol) polarization free energy of solvation -82.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds