Wall clock time and date at job start Wed Apr 1 2020 00:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47136 * 119.99930 * 2 1 3 5 5 C 1.34772 * 119.99753 * 274.99983 * 4 2 1 6 6 O 1.21512 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.48189 * 119.99831 * 180.02562 * 5 4 2 8 8 C 1.39124 * 119.69166 * 179.97438 * 7 5 4 9 9 C 1.39279 * 118.97347 * 179.97438 * 8 7 5 10 10 N 1.39963 * 120.81794 * 179.97438 * 9 8 7 11 11 C 1.37154 * 126.47897 * 180.02562 * 10 9 8 12 12 C 1.34629 * 106.83112 * 179.97438 * 11 10 9 13 13 N 1.34153 * 108.20791 * 0.02562 * 12 11 10 14 14 C 1.30487 * 109.36240 * 359.76020 * 13 12 11 15 15 C 1.39263 * 118.35708 * 0.02562 * 9 8 7 16 16 C 1.38338 * 119.27978 * 359.97438 * 15 9 8 17 17 N 1.31594 * 120.97677 * 359.74065 * 16 15 9 18 18 C 1.53004 * 109.47000 * 240.00171 * 2 1 3 19 19 C 1.53495 * 114.20450 * 175.68542 * 18 2 1 20 20 N 1.47073 * 87.98125 * 220.34126 * 19 18 2 21 21 C 1.36930 * 136.05829 * 207.08200 * 20 19 18 22 22 H 1.08007 * 120.00143 * 7.51198 * 21 20 19 23 23 C 1.38804 * 120.00462 * 187.50665 * 21 20 19 24 24 N 1.31620 * 120.00613 * 174.40288 * 23 21 20 25 25 Si 1.86807 * 119.99807 * 354.40370 * 23 21 20 26 26 H 1.48500 * 109.46966 * 174.95443 * 25 23 21 27 27 H 1.48493 * 109.47091 * 294.95619 * 25 23 21 28 28 H 1.48504 * 109.46855 * 54.95651 * 25 23 21 29 29 C 1.47068 * 87.88530 * 27.34170 * 20 19 18 30 30 H 1.08998 * 109.47162 * 184.63897 * 1 2 3 31 31 H 1.08999 * 109.47223 * 304.63944 * 1 2 3 32 32 H 1.08999 * 109.46923 * 64.63286 * 1 2 3 33 33 H 0.97002 * 119.99853 * 95.00141 * 4 2 1 34 34 H 1.08000 * 120.51700 * 359.95715 * 8 7 5 35 35 H 1.08008 * 126.58842 * 359.93106 * 11 10 9 36 36 H 1.08000 * 125.89563 * 180.02562 * 12 11 10 37 37 H 1.08001 * 125.71691 * 180.23553 * 14 13 12 38 38 H 1.08004 * 120.36385 * 179.97438 * 15 9 8 39 39 H 1.08005 * 119.51140 * 179.97438 * 16 15 9 40 40 H 1.08999 * 113.41040 * 308.87828 * 18 2 1 41 41 H 1.08997 * 113.47243 * 105.56534 * 19 18 2 42 42 H 1.09003 * 113.52126 * 335.12310 * 19 18 2 43 43 H 0.97005 * 119.99470 * 355.00884 * 24 23 21 44 44 H 1.08994 * 113.47031 * 87.43931 * 29 20 19 45 45 H 1.08999 * 113.46704 * 217.87918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8585 1.1609 2.4115 7 6 2.6415 -0.7166 3.5669 8 6 2.7724 -0.0162 4.7618 9 6 3.2381 -0.6875 5.8898 10 7 3.3851 -0.0204 7.1115 11 6 3.8314 -0.5642 8.2889 12 6 3.8171 0.4229 9.2043 13 7 3.3747 1.5406 8.6086 14 6 3.1172 1.2894 7.3543 15 6 3.5548 -2.0385 5.7718 16 6 3.3979 -2.6659 4.5489 17 7 2.9503 -2.0063 3.5018 18 6 2.0400 -0.7212 -1.2493 19 6 3.5660 -0.6940 -1.4128 20 7 3.3557 -0.4731 -2.8516 21 6 4.0527 -0.7331 -4.0012 22 1 4.9534 -1.3279 -3.9639 23 6 3.6017 -0.2323 -5.2147 24 7 4.3275 -0.3877 -6.3015 25 14 1.9643 0.6624 -5.3052 26 1 1.7699 1.2015 -6.6751 27 1 0.8651 -0.2833 -4.9848 28 1 1.9563 1.7802 -4.3275 29 6 2.0705 0.1558 -2.5118 30 1 -0.3633 -1.0243 0.0831 31 1 -0.3633 0.5841 0.8455 32 1 -0.3633 0.4403 -0.9286 33 1 2.2491 -1.6318 1.1526 34 1 2.5172 1.0319 4.8139 35 1 4.1354 -1.5879 8.4509 36 1 4.1110 0.3309 10.2394 37 1 2.7504 2.0026 6.6309 38 1 3.9190 -2.5905 6.6257 39 1 3.6428 -3.7134 4.4530 40 1 1.5924 -1.7044 -1.3948 41 1 4.0440 -1.6468 -1.1853 42 1 4.0424 0.1473 -0.9096 43 1 5.2095 -0.7874 -6.2427 44 1 2.1518 1.2215 -2.2980 45 1 1.2745 -0.0729 -3.2204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970683530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:17 Heat of formation + Delta-G solvation = 112.451780 kcal Electronic energy + Delta-G solvation = -28291.242185 eV Core-core repulsion = 24311.498867 eV Total energy + Delta-G solvation = -3979.743318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.47289 -41.74939 -40.76942 -39.73789 -36.43104 -36.00289 -34.52020 -33.04289 -32.07175 -31.37273 -30.50391 -29.58375 -27.03211 -26.24042 -25.41216 -25.12552 -23.23637 -22.34491 -21.97801 -21.48629 -21.17772 -19.96970 -19.55507 -18.20610 -17.78341 -17.25703 -17.07132 -16.80897 -16.67592 -16.26243 -16.03218 -15.83696 -15.49016 -15.21461 -15.14175 -14.94684 -14.91746 -14.73928 -14.39944 -14.34020 -13.68300 -13.35729 -13.14112 -13.13311 -13.05865 -12.61878 -12.42238 -12.35425 -12.03500 -11.69700 -11.55039 -11.31005 -11.23889 -11.09091 -10.89367 -10.74848 -10.52375 -10.22113 -10.09914 -9.62959 -9.23959 -8.62691 -5.49001 -0.66405 -0.35310 1.09911 1.36610 1.39115 1.49931 1.66456 1.68481 1.95331 2.01899 2.54945 2.69214 2.95701 2.98197 3.18106 3.31339 3.43290 3.55048 3.61957 3.77172 3.79397 3.82895 4.09247 4.18822 4.28259 4.34644 4.45003 4.46512 4.48031 4.53718 4.57331 4.64290 4.67794 4.73923 4.77459 4.85355 5.01608 5.13746 5.18079 5.27683 5.29616 5.40104 5.47937 5.63464 5.93853 6.00911 6.33682 6.66466 6.68590 6.86681 7.07449 7.31255 8.26206 8.88757 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002063 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.952054 B =13568.527087 C =13885.789763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.075 0.925 4 N -0.688 5.688 5 C 0.568 3.432 6 O -0.564 6.564 7 C 0.097 3.903 8 C -0.138 4.138 9 C 0.168 3.832 10 N -0.418 5.418 11 C -0.042 4.042 12 C -0.042 4.042 13 N -0.517 5.517 14 C 0.180 3.820 15 C -0.149 4.149 16 C 0.132 3.868 17 N -0.475 5.475 18 C -0.104 4.104 19 C 0.127 3.873 20 N -0.661 5.661 21 C -0.292 4.292 22 H 0.049 0.951 23 C -0.087 4.087 24 N -0.970 5.970 25 Si 1.107 2.893 26 H -0.305 1.305 27 H -0.263 1.263 28 H -0.262 1.262 29 C 0.099 3.901 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.419 0.581 34 H 0.151 0.849 35 H 0.221 0.779 36 H 0.197 0.803 37 H 0.223 0.777 38 H 0.186 0.814 39 H 0.212 0.788 40 H 0.119 0.881 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.245 0.755 44 H 0.052 0.948 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -6.804 33.327 34.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.093 0.907 4 N -0.338 5.338 5 C 0.353 3.647 6 O -0.443 6.443 7 C -0.041 4.041 8 C -0.162 4.162 9 C 0.066 3.934 10 N -0.099 5.099 11 C -0.170 4.170 12 C -0.186 4.186 13 N -0.234 5.234 14 C -0.101 4.101 15 C -0.171 4.171 16 C -0.027 4.027 17 N -0.188 5.188 18 C -0.124 4.124 19 C 0.002 3.998 20 N -0.390 5.390 21 C -0.420 4.420 22 H 0.067 0.933 23 C -0.279 4.279 24 N -0.615 5.615 25 Si 0.932 3.068 26 H -0.234 1.234 27 H -0.189 1.189 28 H -0.187 1.187 29 C -0.026 4.026 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.257 0.743 34 H 0.169 0.831 35 H 0.237 0.763 36 H 0.214 0.786 37 H 0.239 0.761 38 H 0.204 0.796 39 H 0.229 0.771 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.397 -5.002 31.650 32.886 hybrid contribution 2.154 -1.112 0.897 2.585 sum -5.243 -6.114 32.547 33.529 Atomic orbital electron populations 1.22098 0.93176 1.03265 1.02804 1.20897 0.95372 0.96254 0.82193 0.90684 1.45794 1.64632 1.15095 1.08275 1.18058 0.77646 0.85742 0.83293 1.90783 1.52000 1.16333 1.85177 1.20737 0.99539 0.90883 0.92900 1.21756 1.00607 1.02625 0.91168 1.18063 0.98175 0.93124 0.84013 1.43302 1.48510 1.10295 1.07749 1.23465 1.06842 1.02855 0.83865 1.22932 1.05480 0.88442 1.01733 1.70356 1.17641 1.29726 1.05662 1.25779 1.04064 0.84679 0.95538 1.22551 1.00672 0.91723 1.02158 1.23447 0.91550 1.01844 0.85875 1.67614 1.10511 1.06979 1.33647 1.23278 0.95956 1.00454 0.92713 1.22477 0.95179 0.98792 0.83384 1.46096 1.21049 1.69977 1.01867 1.20019 1.07266 1.28965 0.85705 0.93301 1.27137 1.08727 1.01015 0.91009 1.71028 1.11973 1.48838 1.29695 0.83314 0.72165 0.76486 0.74822 1.23365 1.18897 1.18732 1.22954 0.88471 0.96518 0.94696 0.90715 0.92602 0.90552 0.74316 0.83083 0.76253 0.78632 0.76086 0.79633 0.77123 0.86341 0.93043 0.94491 0.94579 0.93049 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.48 71.98 0.68 -2.62 16 2 C 0.16 3.97 2.35 44.99 0.11 4.08 16 3 H 0.08 2.20 7.41 -2.39 -0.02 2.19 16 4 N -0.69 -15.45 4.93 -445.08 -2.19 -17.64 16 5 C 0.57 13.91 7.78 86.89 0.68 14.59 16 6 O -0.56 -17.18 15.98 -3.75 -0.06 -17.24 16 7 C 0.10 1.87 6.75 41.86 0.28 2.15 16 8 C -0.14 -2.34 9.06 22.73 0.21 -2.13 16 9 C 0.17 2.10 6.67 38.34 0.26 2.35 16 10 N -0.42 -5.54 2.99 -349.79 -1.04 -6.58 16 11 C -0.04 -0.40 10.89 83.03 0.90 0.51 16 12 C -0.04 -0.56 11.85 83.51 0.99 0.42 16 13 N -0.52 -10.18 11.24 -199.69 -2.25 -12.42 16 14 C 0.18 2.99 11.95 179.99 2.15 5.14 16 15 C -0.15 -0.97 9.55 22.54 0.22 -0.76 16 16 C 0.13 1.05 11.17 84.75 0.95 1.99 16 17 N -0.48 -7.31 9.54 -185.12 -1.77 -9.07 16 18 C -0.10 -3.10 3.52 -10.37 -0.04 -3.14 16 19 C 0.13 4.72 8.12 83.18 0.68 5.39 16 20 N -0.66 -31.90 3.69 -737.87 -2.72 -34.63 16 21 C -0.29 -17.22 11.08 84.03 0.93 -16.29 16 22 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 23 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 24 N -0.97 -63.55 13.70 21.65 0.30 -63.25 16 25 Si 1.11 53.41 25.16 68.60 1.73 55.13 16 26 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 27 H -0.26 -11.33 6.51 99.48 0.65 -10.69 16 28 H -0.26 -11.47 6.21 99.48 0.62 -10.86 16 29 C 0.10 3.83 5.27 83.27 0.44 4.27 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.42 8.12 7.93 -92.71 -0.74 7.39 16 34 H 0.15 2.60 6.49 -2.91 -0.02 2.58 16 35 H 0.22 0.06 7.23 -2.91 -0.02 0.04 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.22 2.81 7.15 -2.91 -0.02 2.79 16 38 H 0.19 -0.24 6.94 -2.91 -0.02 -0.26 16 39 H 0.21 0.03 8.06 -2.91 -0.02 0.01 16 40 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.39 8.11 -2.39 -0.02 1.37 16 43 H 0.25 16.15 8.73 -92.70 -0.81 15.34 16 44 H 0.05 1.98 7.50 -2.39 -0.02 1.96 16 45 H 0.06 2.20 4.72 -2.39 -0.01 2.19 16 Total: -1.00 -83.27 375.12 1.99 -81.27 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.11 Total: 13.28 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 9.89 Total: 11.15 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -9.68 Total: -143.60 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.24 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 1.73 Total: 55.13 kcal Total: -83.27 1.99 -81.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970683530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.727 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds