Wall clock time and date at job start Wed Apr 1 2020 00:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46696 * 2 1 4 4 N 1.46494 * 109.47470 * 240.00123 * 2 1 3 5 5 C 1.34784 * 120.00006 * 84.99838 * 4 2 1 6 6 O 1.21515 * 119.99764 * 0.02562 * 5 4 2 7 7 C 1.48183 * 119.99923 * 179.97438 * 5 4 2 8 8 C 1.39122 * 119.68999 * 179.97438 * 7 5 4 9 9 C 1.39279 * 118.97035 * 179.97438 * 8 7 5 10 10 N 1.39967 * 120.81681 * 180.02562 * 9 8 7 11 11 C 1.37155 * 126.48136 * 180.02562 * 10 9 8 12 12 C 1.34626 * 106.83140 * 180.02562 * 11 10 9 13 13 N 1.34151 * 108.20950 * 359.77867 * 12 11 10 14 14 C 1.30488 * 109.36750 * 0.36986 * 13 12 11 15 15 C 1.39258 * 118.36218 * 0.28095 * 9 8 7 16 16 C 1.38349 * 119.27889 * 359.45045 * 15 9 8 17 17 N 1.31599 * 120.97230 * 0.56108 * 16 15 9 18 18 C 1.53004 * 109.46891 * 119.99689 * 2 1 3 19 19 C 1.53946 * 113.74340 * 281.82476 * 18 2 1 20 20 N 1.47814 * 86.03540 * 222.08324 * 19 18 2 21 21 C 1.36931 * 134.45458 * 204.64070 * 20 19 18 22 22 H 1.08007 * 119.99873 * 179.87173 * 21 20 19 23 23 C 1.38812 * 120.00229 * 359.87664 * 21 20 19 24 24 N 1.31614 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47501 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47366 * 119.99831 * 25 23 21 28 28 H 1.48506 * 109.47222 * 239.99827 * 25 23 21 29 29 C 1.47586 * 91.04995 * 24.55447 * 20 19 18 30 30 H 1.08999 * 109.47724 * 300.07093 * 1 2 3 31 31 H 1.08999 * 109.47207 * 60.07340 * 1 2 3 32 32 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00190 * 264.99821 * 4 2 1 34 34 H 1.07993 * 120.51679 * 0.02562 * 8 7 5 35 35 H 1.08000 * 126.58643 * 0.02562 * 11 10 9 36 36 H 1.07995 * 125.89720 * 180.02562 * 12 11 10 37 37 H 1.07998 * 125.72207 * 179.89012 * 14 13 12 38 38 H 1.08000 * 120.36398 * 179.70908 * 15 9 8 39 39 H 1.07997 * 119.51683 * 180.27771 * 16 15 9 40 40 H 1.09003 * 112.93903 * 53.42374 * 18 2 1 41 41 H 1.08995 * 113.77034 * 336.35428 * 19 18 2 42 42 H 1.09005 * 113.76587 * 107.75093 * 19 18 2 43 43 H 0.97005 * 119.99891 * 180.02562 * 24 23 21 44 44 H 1.09005 * 113.76727 * 221.15145 * 29 20 19 45 45 H 1.08994 * 113.87416 * 89.76124 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0181 -2.3571 6 8 1.8585 1.1610 -2.4115 7 6 2.6417 -0.7165 -3.5669 8 6 2.7716 -0.0164 -4.7620 9 6 3.2383 -0.6874 -5.8897 10 7 3.3844 -0.0206 -7.1117 11 6 3.8307 -0.5644 -8.2891 12 6 3.8153 0.4224 -9.2047 13 7 3.3682 1.5389 -8.6103 14 6 3.1113 1.2881 -7.3558 15 6 3.5510 -2.0394 -5.7728 16 6 3.4005 -2.6653 -4.5482 17 7 2.9571 -2.0046 -3.4999 18 6 2.0399 -0.7212 1.2493 19 6 1.9743 0.1330 2.5284 20 7 3.3097 -0.4178 2.8418 21 6 4.0192 -0.6143 3.9963 22 1 5.0065 -1.0503 3.9559 23 6 3.4695 -0.2532 5.2188 24 7 2.2665 0.2785 5.2680 25 14 4.4371 -0.5219 6.7938 26 1 5.7522 -1.1305 6.4692 27 1 4.6486 0.7815 7.4734 28 1 3.6796 -1.4308 7.6912 29 6 3.5701 -0.6728 1.4116 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5127 -0.8906 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 2.5153 1.0314 -4.8144 35 1 4.1360 -1.5877 -8.4507 36 1 4.1081 0.3301 -10.2401 37 1 2.7397 2.0000 -6.6337 38 1 3.9111 -2.5924 -6.6278 39 1 3.6461 -3.7125 -4.4521 40 1 1.6176 -1.7193 1.3659 41 1 1.9749 1.2066 2.3402 42 1 1.1952 -0.1777 3.2246 43 1 1.8825 0.5312 6.1222 44 1 4.0627 -1.6257 1.2179 45 1 4.0406 0.1625 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970683532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:21 Heat of formation + Delta-G solvation = 129.234910 kcal Electronic energy + Delta-G solvation = -28172.959568 eV Core-core repulsion = 24193.944021 eV Total energy + Delta-G solvation = -3979.015547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89456 -40.92001 -39.43259 -37.99891 -35.45180 -34.87566 -32.41326 -32.05410 -31.18690 -30.30026 -29.91161 -27.48646 -25.57527 -24.78650 -24.59110 -23.91644 -22.42134 -21.51408 -21.16311 -20.47416 -19.67413 -18.78353 -17.33196 -16.96960 -16.57914 -16.49057 -16.16087 -15.81579 -15.26450 -15.10586 -14.83719 -14.73727 -14.38869 -14.36511 -14.03076 -13.86336 -13.81314 -13.56364 -13.14057 -12.55376 -12.32172 -12.09886 -11.76720 -11.61545 -11.41633 -11.24181 -10.90894 -10.77182 -10.68179 -10.47804 -10.35808 -10.13457 -9.86657 -9.81770 -9.73728 -9.60582 -9.42952 -9.08092 -8.91488 -8.79556 -6.87235 -5.76837 -3.08665 -0.01569 0.26436 1.68490 1.94851 2.50828 2.63323 2.95977 3.38803 3.43358 3.44072 3.46660 3.71197 3.94754 3.99150 4.13364 4.29281 4.40020 4.45208 4.73520 4.84976 4.91258 5.00354 5.09221 5.13411 5.16160 5.20175 5.39013 5.53329 5.62216 5.70068 5.79655 5.81442 5.98671 6.05363 6.14132 6.23601 6.35566 6.44536 6.53054 6.58459 6.62058 6.76398 7.14294 7.22404 7.36257 7.44266 7.55559 7.58261 7.98387 8.12871 9.05048 9.71156 10.60304 11.40581 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.001944 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.219703 B =14402.565903 C =14685.529529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.090 0.910 4 N -0.692 5.692 5 C 0.566 3.434 6 O -0.532 6.532 7 C 0.119 3.881 8 C -0.133 4.133 9 C 0.176 3.824 10 N -0.416 5.416 11 C -0.054 4.054 12 C -0.017 4.017 13 N -0.481 5.481 14 C 0.200 3.800 15 C -0.172 4.172 16 C 0.131 3.869 17 N -0.461 5.461 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.410 0.590 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.214 0.786 38 H 0.148 0.852 39 H 0.175 0.825 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.041 0.959 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -6.608 -27.192 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.341 5.341 5 C 0.350 3.650 6 O -0.408 6.408 7 C -0.020 4.020 8 C -0.155 4.155 9 C 0.075 3.925 10 N -0.096 5.096 11 C -0.183 4.183 12 C -0.162 4.162 13 N -0.198 5.198 14 C -0.081 4.081 15 C -0.194 4.194 16 C -0.028 4.028 17 N -0.173 5.173 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.349 4.349 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.175 0.825 35 H 0.198 0.802 36 H 0.195 0.805 37 H 0.231 0.769 38 H 0.165 0.835 39 H 0.192 0.808 40 H 0.108 0.892 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.687 -5.432 -26.377 26.940 hybrid contribution 0.955 -0.889 0.355 1.352 sum 0.268 -6.321 -26.022 26.780 Atomic orbital electron populations 1.22114 0.95118 1.01991 1.02414 1.21247 0.94033 0.97547 0.82828 0.89193 1.46007 1.64386 1.14796 1.08907 1.17717 0.78572 0.86102 0.82652 1.90806 1.50644 1.14867 1.84522 1.21214 0.96988 0.90025 0.93731 1.21781 1.00276 1.02676 0.90801 1.17955 0.97824 0.92243 0.84526 1.43227 1.48550 1.10558 1.07301 1.22829 1.08820 1.01549 0.85077 1.22453 1.04800 0.88627 1.00369 1.70394 1.16557 1.28048 1.04753 1.25539 1.03337 0.83804 0.95465 1.22099 1.03418 0.92803 1.01130 1.22782 0.92987 1.00500 0.86526 1.67668 1.09903 1.07651 1.32076 1.23873 0.97650 1.00846 0.94316 1.22236 0.89661 0.93875 0.89224 1.45991 1.16334 1.71851 0.99656 1.19069 0.98439 1.34619 0.82802 0.90259 1.24781 0.97091 1.01181 0.97496 1.69815 1.15381 1.47395 1.24278 0.86054 0.78938 0.77343 0.83470 1.20502 1.21759 1.21704 1.22533 0.93044 0.97724 0.86770 0.90828 0.92790 0.92596 0.75386 0.82476 0.80175 0.80517 0.76949 0.83466 0.80797 0.89162 0.95372 0.90629 0.93680 0.94042 0.95078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.44 37.16 0.35 -1.80 16 2 C 0.15 2.22 2.29 -67.93 -0.16 2.07 16 3 H 0.09 1.54 7.48 -51.93 -0.39 1.15 16 4 N -0.69 -9.10 4.93 -54.64 -0.27 -9.37 16 5 C 0.57 7.67 7.78 -12.17 -0.09 7.58 16 6 O -0.53 -8.61 15.98 5.35 0.09 -8.53 16 7 C 0.12 1.30 6.75 -83.04 -0.56 0.74 16 8 C -0.13 -1.25 9.06 -38.87 -0.35 -1.60 16 9 C 0.18 1.38 6.67 -83.38 -0.56 0.83 16 10 N -0.42 -3.31 2.99 -61.91 -0.18 -3.49 16 11 C -0.05 -0.35 10.89 -16.45 -0.18 -0.53 16 12 C -0.02 -0.13 11.85 -17.82 -0.21 -0.35 16 13 N -0.48 -4.95 11.24 -14.47 -0.16 -5.11 16 14 C 0.20 1.75 11.95 -89.60 -1.07 0.68 16 15 C -0.17 -1.00 9.55 -39.16 -0.37 -1.37 16 16 C 0.13 0.84 11.17 -17.61 -0.20 0.64 16 17 N -0.46 -4.38 9.54 -9.86 -0.09 -4.48 16 18 C -0.15 -2.59 3.35 -89.69 -0.30 -2.89 16 19 C 0.18 4.03 6.98 -2.84 -0.02 4.01 16 20 N -0.61 -15.65 3.70 -177.69 -0.66 -16.30 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -27.25 11.39 55.49 0.63 -26.62 16 25 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.13 2.52 8.38 -2.96 -0.02 2.50 16 30 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 4.85 7.93 -40.82 -0.32 4.53 16 34 H 0.16 1.40 6.49 -52.49 -0.34 1.06 16 35 H 0.18 0.54 7.23 -52.49 -0.38 0.16 16 36 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.21 1.35 7.15 -52.49 -0.38 0.97 16 38 H 0.15 0.42 6.94 -52.49 -0.36 0.05 16 39 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 42 H 0.08 1.90 7.17 -51.93 -0.37 1.53 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -35.19 382.37 -9.80 -44.99 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.88 Total: 2.24 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -4.00 Total: 3.75 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.74 Total: -65.37 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.19 -9.80 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970683532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.220 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds