Wall clock time and date at job start Wed Apr 1 2020 00:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46696 * 2 1 4 4 N 1.46494 * 109.47470 * 240.00123 * 2 1 3 5 5 C 1.34784 * 120.00006 * 84.99838 * 4 2 1 6 6 O 1.21515 * 119.99764 * 0.02562 * 5 4 2 7 7 C 1.48183 * 119.99923 * 179.97438 * 5 4 2 8 8 C 1.39122 * 119.68999 * 179.97438 * 7 5 4 9 9 C 1.39279 * 118.97035 * 179.97438 * 8 7 5 10 10 N 1.39967 * 120.81681 * 180.02562 * 9 8 7 11 11 C 1.37155 * 126.48136 * 180.02562 * 10 9 8 12 12 C 1.34626 * 106.83140 * 180.02562 * 11 10 9 13 13 N 1.34151 * 108.20950 * 359.77867 * 12 11 10 14 14 C 1.30488 * 109.36750 * 0.36986 * 13 12 11 15 15 C 1.39258 * 118.36218 * 0.28095 * 9 8 7 16 16 C 1.38349 * 119.27889 * 359.45045 * 15 9 8 17 17 N 1.31599 * 120.97230 * 0.56108 * 16 15 9 18 18 C 1.53004 * 109.46891 * 119.99689 * 2 1 3 19 19 C 1.53946 * 113.74340 * 281.82476 * 18 2 1 20 20 N 1.47814 * 86.03540 * 222.08324 * 19 18 2 21 21 C 1.36931 * 134.45458 * 204.64070 * 20 19 18 22 22 H 1.08007 * 119.99873 * 179.87173 * 21 20 19 23 23 C 1.38812 * 120.00229 * 359.87664 * 21 20 19 24 24 N 1.31614 * 119.99753 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47501 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47366 * 119.99831 * 25 23 21 28 28 H 1.48506 * 109.47222 * 239.99827 * 25 23 21 29 29 C 1.47586 * 91.04995 * 24.55447 * 20 19 18 30 30 H 1.08999 * 109.47724 * 300.07093 * 1 2 3 31 31 H 1.08999 * 109.47207 * 60.07340 * 1 2 3 32 32 H 1.09005 * 109.46867 * 180.02562 * 1 2 3 33 33 H 0.97006 * 120.00190 * 264.99821 * 4 2 1 34 34 H 1.07993 * 120.51679 * 0.02562 * 8 7 5 35 35 H 1.08000 * 126.58643 * 0.02562 * 11 10 9 36 36 H 1.07995 * 125.89720 * 180.02562 * 12 11 10 37 37 H 1.07998 * 125.72207 * 179.89012 * 14 13 12 38 38 H 1.08000 * 120.36398 * 179.70908 * 15 9 8 39 39 H 1.07997 * 119.51683 * 180.27771 * 16 15 9 40 40 H 1.09003 * 112.93903 * 53.42374 * 18 2 1 41 41 H 1.08995 * 113.77034 * 336.35428 * 19 18 2 42 42 H 1.09005 * 113.76587 * 107.75093 * 19 18 2 43 43 H 0.97005 * 119.99891 * 180.02562 * 24 23 21 44 44 H 1.09005 * 113.76727 * 221.15145 * 29 20 19 45 45 H 1.08994 * 113.87416 * 89.76124 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1471 -0.0181 -2.3571 6 8 1.8585 1.1610 -2.4115 7 6 2.6417 -0.7165 -3.5669 8 6 2.7716 -0.0164 -4.7620 9 6 3.2383 -0.6874 -5.8897 10 7 3.3844 -0.0206 -7.1117 11 6 3.8307 -0.5644 -8.2891 12 6 3.8153 0.4224 -9.2047 13 7 3.3682 1.5389 -8.6103 14 6 3.1113 1.2881 -7.3558 15 6 3.5510 -2.0394 -5.7728 16 6 3.4005 -2.6653 -4.5482 17 7 2.9571 -2.0046 -3.4999 18 6 2.0399 -0.7212 1.2493 19 6 1.9743 0.1330 2.5284 20 7 3.3097 -0.4178 2.8418 21 6 4.0192 -0.6143 3.9963 22 1 5.0065 -1.0503 3.9559 23 6 3.4695 -0.2532 5.2188 24 7 2.2665 0.2785 5.2680 25 14 4.4371 -0.5219 6.7938 26 1 5.7522 -1.1305 6.4692 27 1 4.6486 0.7815 7.4734 28 1 3.6796 -1.4308 7.6912 29 6 3.5701 -0.6728 1.4116 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5127 -0.8906 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 -1.1526 34 1 2.5153 1.0314 -4.8144 35 1 4.1360 -1.5877 -8.4507 36 1 4.1081 0.3301 -10.2401 37 1 2.7397 2.0000 -6.6337 38 1 3.9111 -2.5924 -6.6278 39 1 3.6461 -3.7125 -4.4521 40 1 1.6176 -1.7193 1.3659 41 1 1.9749 1.2066 2.3402 42 1 1.1952 -0.1777 3.2246 43 1 1.8825 0.5312 6.1222 44 1 4.0627 -1.6257 1.2179 45 1 4.0406 0.1625 0.8931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970683532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:20 Heat of formation + Delta-G solvation = 106.885519 kcal Electronic energy + Delta-G solvation = -28173.928711 eV Core-core repulsion = 24193.944021 eV Total energy + Delta-G solvation = -3979.984689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45773 -41.70681 -40.53511 -39.47769 -36.32728 -35.96655 -34.15862 -32.98825 -31.99651 -31.30499 -30.48642 -29.33311 -26.76817 -26.09707 -25.53721 -25.23756 -23.36895 -22.42571 -21.97092 -21.46083 -20.92801 -19.82465 -18.78446 -18.13809 -17.66539 -17.05863 -16.95901 -16.79826 -16.66207 -16.20101 -15.92125 -15.79821 -15.42410 -15.18509 -14.93402 -14.91569 -14.84252 -14.51412 -14.36298 -14.06307 -13.40730 -13.27396 -13.10922 -13.07188 -12.96665 -12.70799 -12.41333 -12.36998 -12.01703 -11.82462 -11.63421 -11.42916 -11.24922 -11.18035 -10.87924 -10.76237 -10.50319 -10.20374 -10.06323 -9.61498 -8.92221 -7.90856 -5.24175 -0.64538 -0.33426 1.11640 1.38203 1.45404 1.46572 1.56728 1.68713 1.98859 2.03121 2.47053 2.71208 3.00572 3.29550 3.34437 3.38657 3.45065 3.63075 3.72119 3.78725 3.82244 3.95968 4.12088 4.26281 4.36227 4.43824 4.46857 4.49692 4.55033 4.57336 4.69225 4.76996 4.83299 4.86313 4.94866 5.06647 5.15522 5.25108 5.29880 5.30578 5.46742 5.54480 5.64884 5.64983 5.94044 6.02157 6.36757 6.69389 6.87980 6.92240 7.10492 7.60489 8.56301 9.26401 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.001944 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.219703 B =14402.565903 C =14685.529529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.067 0.933 4 N -0.685 5.685 5 C 0.566 3.434 6 O -0.567 6.567 7 C 0.098 3.902 8 C -0.139 4.139 9 C 0.168 3.832 10 N -0.418 5.418 11 C -0.041 4.041 12 C -0.042 4.042 13 N -0.517 5.517 14 C 0.180 3.820 15 C -0.148 4.148 16 C 0.133 3.867 17 N -0.474 5.474 18 C -0.109 4.109 19 C 0.171 3.829 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.083 0.917 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.295 1.295 28 H -0.289 1.289 29 C 0.127 3.873 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.419 0.581 34 H 0.150 0.850 35 H 0.222 0.778 36 H 0.197 0.803 37 H 0.222 0.778 38 H 0.188 0.812 39 H 0.214 0.786 40 H 0.106 0.894 41 H 0.013 0.987 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -9.686 -29.248 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.085 0.915 4 N -0.335 5.335 5 C 0.351 3.649 6 O -0.446 6.446 7 C -0.040 4.040 8 C -0.162 4.162 9 C 0.066 3.934 10 N -0.098 5.098 11 C -0.170 4.170 12 C -0.186 4.186 13 N -0.234 5.234 14 C -0.101 4.101 15 C -0.170 4.170 16 C -0.027 4.027 17 N -0.187 5.187 18 C -0.129 4.129 19 C 0.046 3.954 20 N -0.370 5.370 21 C -0.363 4.363 22 H 0.101 0.899 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.222 1.222 28 H -0.216 1.216 29 C 0.003 3.997 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.257 0.743 34 H 0.168 0.832 35 H 0.238 0.762 36 H 0.214 0.786 37 H 0.238 0.762 38 H 0.205 0.795 39 H 0.230 0.770 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.532 -8.535 -28.472 29.728 hybrid contribution 0.639 0.024 0.847 1.061 sum 1.171 -8.512 -27.625 28.930 Atomic orbital electron populations 1.22048 0.93718 1.03070 1.02156 1.20883 0.94990 0.96044 0.82643 0.91524 1.45804 1.64460 1.15044 1.08233 1.18124 0.77691 0.85761 0.83355 1.90782 1.52149 1.16490 1.85213 1.20700 0.99533 0.90949 0.92771 1.21741 1.00624 1.02582 0.91224 1.18056 0.98219 0.93147 0.83959 1.43305 1.48442 1.10333 1.07740 1.23471 1.06819 1.02853 0.83814 1.22934 1.05485 0.88453 1.01745 1.70353 1.17620 1.29758 1.05660 1.25764 1.04094 0.84769 0.95507 1.22559 1.00646 0.91624 1.02181 1.23474 0.91532 1.01847 0.85798 1.67620 1.10429 1.06886 1.33758 1.23458 0.95985 1.00439 0.92993 1.22139 0.88194 0.93760 0.91355 1.46422 1.17332 1.72111 1.01143 1.19467 0.98757 1.33937 0.84156 0.89918 1.25639 0.98196 1.01629 1.00692 1.70001 1.16897 1.48750 1.24580 0.85003 0.78129 0.76846 0.79297 1.18945 1.22180 1.21613 1.22663 0.94872 0.98364 0.83848 0.91446 0.92709 0.90809 0.74316 0.83230 0.76173 0.78600 0.76209 0.79517 0.76974 0.87625 0.96895 0.93359 0.94218 0.92163 0.95089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.44 71.98 0.68 -3.39 16 2 C 0.16 4.80 2.29 44.99 0.10 4.90 16 3 H 0.07 2.36 7.48 -2.39 -0.02 2.34 16 4 N -0.69 -17.53 4.93 -445.08 -2.20 -19.72 16 5 C 0.57 15.33 7.78 86.89 0.68 16.00 16 6 O -0.57 -19.01 15.98 -3.76 -0.06 -19.07 16 7 C 0.10 2.05 6.75 41.86 0.28 2.33 16 8 C -0.14 -2.52 9.06 22.73 0.21 -2.32 16 9 C 0.17 2.24 6.67 38.34 0.26 2.49 16 10 N -0.42 -5.84 2.99 -349.79 -1.04 -6.88 16 11 C -0.04 -0.41 10.89 83.03 0.90 0.49 16 12 C -0.04 -0.59 11.85 83.51 0.99 0.40 16 13 N -0.52 -10.53 11.24 -199.69 -2.25 -12.78 16 14 C 0.18 3.14 11.95 179.99 2.15 5.29 16 15 C -0.15 -1.05 9.55 22.54 0.22 -0.83 16 16 C 0.13 1.13 11.17 84.75 0.95 2.08 16 17 N -0.47 -7.83 9.54 -185.12 -1.77 -9.59 16 18 C -0.11 -3.81 3.35 -10.13 -0.03 -3.84 16 19 C 0.17 8.09 6.98 86.44 0.60 8.70 16 20 N -0.64 -33.28 3.70 -716.10 -2.65 -35.94 16 21 C -0.23 -13.32 10.70 84.03 0.90 -12.43 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 24 N -0.95 -57.92 11.39 21.65 0.25 -57.67 16 25 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 C 0.13 5.06 8.38 86.49 0.72 5.78 16 30 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.42 9.20 7.93 -92.70 -0.74 8.47 16 34 H 0.15 2.82 6.49 -2.91 -0.02 2.80 16 35 H 0.22 0.13 7.23 -2.91 -0.02 0.11 16 36 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.22 3.05 7.15 -2.91 -0.02 3.03 16 38 H 0.19 -0.18 6.94 -2.91 -0.02 -0.20 16 39 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 41 H 0.01 0.65 8.03 -2.39 -0.02 0.63 16 42 H 0.05 2.53 7.17 -2.38 -0.02 2.51 16 43 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 44 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.03 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -79.49 382.37 2.67 -76.82 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.29 Total: 14.57 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 10.07 Total: 22.18 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -9.66 Total: -142.58 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -79.49 2.67 -76.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970683532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.706 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds