Wall clock time and date at job start Wed Apr 1 2020 00:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46992 * 2 1 4 4 N 1.46499 * 109.47091 * 120.00320 * 2 1 3 5 5 C 1.34785 * 119.99679 * 275.00325 * 4 2 1 6 6 O 1.21564 * 120.00381 * 359.97438 * 5 4 2 7 7 C 1.47718 * 119.99477 * 180.02562 * 5 4 2 8 8 C 1.39715 * 120.01905 * 179.97438 * 7 5 4 9 9 C 1.37668 * 119.96887 * 179.97438 * 8 7 5 10 10 C 1.39488 * 120.02983 * 0.02562 * 9 8 7 11 11 C 1.48293 * 119.97717 * 179.97438 * 10 9 8 12 12 N 1.34012 * 125.65538 * 359.97438 * 11 10 9 13 13 C 1.30641 * 109.79163 * 180.02562 * 12 11 10 14 14 N 1.34573 * 108.30190 * 0.02562 * 13 12 11 15 15 H 0.96997 * 126.74710 * 179.97438 * 14 13 12 16 16 N 1.31555 * 125.65258 * 179.69502 * 11 10 9 17 17 C 1.39506 * 120.05155 * 359.95154 * 10 9 8 18 18 C 1.37664 * 120.02138 * 0.04732 * 17 10 9 19 19 C 1.53000 * 109.47048 * 240.00166 * 2 1 3 20 20 C 1.53945 * 113.74147 * 156.67882 * 19 2 1 21 21 N 1.47579 * 86.11493 * 222.04394 * 20 19 2 22 22 C 1.36939 * 134.49229 * 204.63803 * 21 20 19 23 23 H 1.07998 * 120.00062 * 180.02562 * 22 21 20 24 24 C 1.38806 * 119.99768 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00332 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99855 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47054 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47385 * 120.00413 * 26 24 22 29 29 H 1.48506 * 109.47128 * 240.00423 * 26 24 22 30 30 C 1.47578 * 91.01370 * 24.64167 * 21 20 19 31 31 H 1.09000 * 109.46951 * 59.99843 * 1 2 3 32 32 H 1.08992 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47200 * 300.00322 * 1 2 3 34 34 H 0.96997 * 120.00361 * 94.99475 * 4 2 1 35 35 H 1.07996 * 120.01332 * 359.69715 * 8 7 5 36 36 H 1.08001 * 119.97898 * 179.97438 * 9 8 7 37 37 H 1.07991 * 125.84730 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.99019 * 180.02562 * 17 10 9 39 39 H 1.08003 * 120.01244 * 179.97438 * 18 17 10 40 40 H 1.09007 * 112.94280 * 288.40543 * 19 2 1 41 41 H 1.09003 * 113.76674 * 336.34742 * 20 19 2 42 42 H 1.09001 * 113.77274 * 107.74598 * 20 19 2 43 43 H 0.97004 * 120.00050 * 179.97438 * 25 24 22 44 44 H 1.09001 * 113.76520 * 221.05803 * 30 21 20 45 45 H 1.08992 * 113.87337 * 89.67515 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1613 2.4118 7 6 2.6399 -0.7146 3.5631 8 6 2.7739 -0.0180 4.7668 9 6 3.2329 -0.6681 5.8901 10 6 3.5646 -2.0215 5.8269 11 6 4.0594 -2.7205 7.0375 12 7 4.2312 -2.1650 8.2449 13 6 4.6802 -3.0601 9.0838 14 7 4.8099 -4.2274 8.4270 15 1 5.1228 -5.0687 8.7948 16 7 4.3976 -3.9900 7.1056 17 6 3.4307 -2.7182 4.6257 18 6 2.9719 -2.0702 3.5010 19 6 2.0400 -0.7212 -1.2493 20 6 3.4666 -0.3146 -1.6607 21 7 2.9584 -0.3120 -3.0462 22 6 3.5329 -0.4678 -4.2795 23 1 2.9225 -0.4219 -5.1692 24 6 4.8999 -0.6836 -4.3860 25 7 5.6439 -0.7389 -3.3017 26 14 5.6837 -0.8954 -6.0683 27 1 4.6386 -0.7912 -7.1180 28 1 6.7019 0.1652 -6.2772 29 1 6.3341 -2.2282 -6.1472 30 6 1.5824 -0.0739 -2.5688 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2489 -1.6318 1.1526 35 1 2.5218 1.0310 4.8148 36 1 3.3370 -0.1297 6.8205 37 1 4.9090 -2.8918 10.1258 38 1 3.6874 -3.7662 4.5779 39 1 2.8687 -2.6096 2.5711 40 1 1.8828 -1.7992 -1.2115 41 1 3.7640 0.6701 -1.2999 42 1 4.2152 -1.0833 -1.4688 43 1 6.5992 -0.8901 -3.3761 44 1 0.8265 -0.6505 -3.1021 45 1 1.3245 0.9808 -2.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970685339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:20 Heat of formation + Delta-G solvation = 133.303757 kcal Electronic energy + Delta-G solvation = -27903.151825 eV Core-core repulsion = 23924.312716 eV Total energy + Delta-G solvation = -3978.839109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48138 -40.23840 -38.75901 -37.80046 -34.81998 -33.60958 -32.35902 -32.18524 -31.37537 -30.65045 -29.69122 -27.49045 -25.34486 -24.58340 -23.84323 -23.58417 -22.25378 -21.64380 -20.88797 -20.14516 -19.20911 -18.90031 -17.68673 -16.73519 -16.24908 -16.16217 -15.90586 -15.41205 -15.12772 -14.89664 -14.72024 -14.40361 -13.98985 -13.80602 -13.70432 -13.33958 -13.17777 -12.80018 -12.63695 -12.44146 -12.24166 -12.06469 -11.64310 -11.33956 -11.30399 -11.26571 -10.90463 -10.85145 -10.70799 -10.53068 -10.40986 -10.32026 -9.98005 -9.73567 -9.69908 -9.37907 -9.20735 -8.91564 -8.77768 -8.68697 -6.84560 -5.74174 -3.06416 0.28163 1.19596 1.29011 2.16311 2.38204 3.08979 3.29143 3.40353 3.45570 3.48211 3.52169 3.81825 4.14021 4.44055 4.47255 4.67407 4.72024 4.81360 5.12811 5.13827 5.30113 5.30839 5.31673 5.45324 5.56136 5.66010 5.69207 5.74206 5.81903 5.83883 5.97244 6.06089 6.11577 6.18271 6.19198 6.29558 6.39293 6.44412 6.54106 6.58957 6.62314 6.69268 6.83982 7.26954 7.39618 7.56120 7.59344 7.68266 8.01141 8.35458 9.07528 9.73547 10.63110 11.42856 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002093 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.432770 B =13377.802898 C =14729.650120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.711 5.711 5 C 0.555 3.445 6 O -0.538 6.538 7 C -0.111 4.111 8 C -0.066 4.066 9 C -0.083 4.083 10 C -0.001 4.001 11 C 0.269 3.731 12 N -0.533 5.533 13 C 0.266 3.734 14 N -0.484 5.484 15 H 0.444 0.556 16 N -0.301 5.301 17 C -0.090 4.090 18 C -0.089 4.089 19 C -0.147 4.147 20 C 0.170 3.830 21 N -0.613 5.613 22 C -0.221 4.221 23 H 0.080 0.920 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.911 3.089 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.130 3.870 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.399 0.601 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.226 0.774 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.088 0.912 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -7.228 26.469 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.342 3.658 6 O -0.417 6.417 7 C -0.115 4.115 8 C -0.085 4.085 9 C -0.103 4.103 10 C -0.004 4.004 11 C -0.010 4.010 12 N -0.261 5.261 13 C -0.034 4.034 14 N -0.202 5.202 15 H 0.290 0.710 16 N -0.130 5.130 17 C -0.110 4.110 18 C -0.107 4.107 19 C -0.167 4.167 20 C 0.045 3.955 21 N -0.339 5.339 22 C -0.349 4.349 23 H 0.098 0.902 24 C -0.206 4.206 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.003 3.997 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.234 0.766 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.242 0.758 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.464 -6.564 25.723 27.103 hybrid contribution 1.067 -1.131 -0.302 1.584 sum -4.398 -7.695 25.421 26.921 Atomic orbital electron populations 1.22134 0.95590 1.01786 1.02162 1.21132 0.93530 0.97658 0.83124 0.89289 1.46043 1.66414 1.14107 1.09572 1.18197 0.77894 0.86557 0.83155 1.90766 1.50459 1.15391 1.85044 1.20227 1.02330 0.94299 0.94680 1.21235 0.95858 1.00768 0.90603 1.21157 0.97143 0.92834 0.99182 1.17609 1.00761 0.93145 0.88872 1.22355 0.97686 0.88208 0.92753 1.70525 1.22260 1.32789 1.00493 1.26134 0.95322 0.81763 1.00151 1.48154 1.51304 1.12947 1.07841 0.71035 1.78281 1.21881 1.16940 0.95927 1.21094 0.98291 1.00489 0.91118 1.21266 0.97356 0.93446 0.98667 1.23828 1.00992 0.99671 0.92220 1.22270 0.91688 0.98331 0.83225 1.45961 1.02492 1.83251 1.02167 1.19071 0.91079 1.41830 0.82939 0.90224 1.24789 0.95986 1.02515 0.97301 1.69830 1.05101 1.55743 1.26138 0.86058 0.79230 0.77347 0.83199 1.20472 1.21779 1.21738 1.22492 0.89692 0.96778 0.90692 0.91358 0.92718 0.92706 0.76585 0.83921 0.84088 0.75802 0.84565 0.84721 0.89390 0.95603 0.91024 0.93732 0.93768 0.94714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.29 37.16 0.35 -1.78 16 2 C 0.15 2.33 2.42 -67.93 -0.16 2.16 16 3 H 0.09 1.60 7.37 -51.93 -0.38 1.22 16 4 N -0.71 -9.83 5.03 -54.79 -0.28 -10.11 16 5 C 0.56 8.28 7.73 -12.38 -0.10 8.19 16 6 O -0.54 -9.76 16.00 5.31 0.08 -9.67 16 7 C -0.11 -1.39 5.88 -104.92 -0.62 -2.01 16 8 C -0.07 -0.77 9.58 -39.24 -0.38 -1.14 16 9 C -0.08 -0.89 9.67 -39.32 -0.38 -1.27 16 10 C 0.00 -0.01 5.88 -104.82 -0.62 -0.63 16 11 C 0.27 2.95 7.77 -156.60 -1.22 1.74 16 12 N -0.53 -5.13 10.81 -12.40 -0.13 -5.26 16 13 C 0.27 1.41 13.11 -90.68 -1.19 0.22 16 14 N -0.48 -2.73 7.44 29.52 0.22 -2.51 16 15 H 0.44 0.76 8.96 -182.34 -1.63 -0.88 16 16 N -0.30 -3.04 12.42 32.09 0.40 -2.64 16 17 C -0.09 -0.93 9.66 -39.32 -0.38 -1.31 16 18 C -0.09 -0.93 9.52 -39.24 -0.37 -1.31 16 19 C -0.15 -2.63 3.50 -89.70 -0.31 -2.94 16 20 C 0.17 3.99 7.07 -2.98 -0.02 3.97 16 21 N -0.61 -15.79 3.70 -177.94 -0.66 -16.45 16 22 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 23 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.92 -27.60 11.38 55.49 0.63 -26.97 16 26 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 30 C 0.13 2.61 7.56 -2.98 -0.02 2.59 16 31 H 0.07 0.88 7.43 -51.93 -0.39 0.50 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 4.60 6.62 -40.82 -0.27 4.33 16 35 H 0.14 1.63 7.64 -52.49 -0.40 1.23 16 36 H 0.14 1.34 7.82 -52.49 -0.41 0.93 16 37 H 0.23 -0.03 8.06 -52.49 -0.42 -0.45 16 38 H 0.14 1.27 7.82 -52.48 -0.41 0.86 16 39 H 0.14 1.15 6.39 -52.48 -0.34 0.81 16 40 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 41 H 0.03 0.65 7.96 -51.93 -0.41 0.23 16 42 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -37.50 382.46 -11.76 -49.26 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.09 Total: 1.57 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -5.68 Total: -0.33 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.18 Total: -63.94 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.50 -11.76 -49.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970685339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.569 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds