Wall clock time and date at job start Wed Apr 1 2020 00:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46992 * 2 1 4 4 N 1.46499 * 109.47091 * 120.00320 * 2 1 3 5 5 C 1.34785 * 119.99679 * 275.00325 * 4 2 1 6 6 O 1.21564 * 120.00381 * 359.97438 * 5 4 2 7 7 C 1.47718 * 119.99477 * 180.02562 * 5 4 2 8 8 C 1.39715 * 120.01905 * 179.97438 * 7 5 4 9 9 C 1.37668 * 119.96887 * 179.97438 * 8 7 5 10 10 C 1.39488 * 120.02983 * 0.02562 * 9 8 7 11 11 C 1.48293 * 119.97717 * 179.97438 * 10 9 8 12 12 N 1.34012 * 125.65538 * 359.97438 * 11 10 9 13 13 C 1.30641 * 109.79163 * 180.02562 * 12 11 10 14 14 N 1.34573 * 108.30190 * 0.02562 * 13 12 11 15 15 H 0.96997 * 126.74710 * 179.97438 * 14 13 12 16 16 N 1.31555 * 125.65258 * 179.69502 * 11 10 9 17 17 C 1.39506 * 120.05155 * 359.95154 * 10 9 8 18 18 C 1.37664 * 120.02138 * 0.04732 * 17 10 9 19 19 C 1.53000 * 109.47048 * 240.00166 * 2 1 3 20 20 C 1.53945 * 113.74147 * 156.67882 * 19 2 1 21 21 N 1.47579 * 86.11493 * 222.04394 * 20 19 2 22 22 C 1.36939 * 134.49229 * 204.63803 * 21 20 19 23 23 H 1.07998 * 120.00062 * 180.02562 * 22 21 20 24 24 C 1.38806 * 119.99768 * 359.97438 * 22 21 20 25 25 N 1.31621 * 120.00332 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99855 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47054 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47385 * 120.00413 * 26 24 22 29 29 H 1.48506 * 109.47128 * 240.00423 * 26 24 22 30 30 C 1.47578 * 91.01370 * 24.64167 * 21 20 19 31 31 H 1.09000 * 109.46951 * 59.99843 * 1 2 3 32 32 H 1.08992 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47200 * 300.00322 * 1 2 3 34 34 H 0.96997 * 120.00361 * 94.99475 * 4 2 1 35 35 H 1.07996 * 120.01332 * 359.69715 * 8 7 5 36 36 H 1.08001 * 119.97898 * 179.97438 * 9 8 7 37 37 H 1.07991 * 125.84730 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.99019 * 180.02562 * 17 10 9 39 39 H 1.08003 * 120.01244 * 179.97438 * 18 17 10 40 40 H 1.09007 * 112.94280 * 288.40543 * 19 2 1 41 41 H 1.09003 * 113.76674 * 336.34742 * 20 19 2 42 42 H 1.09001 * 113.77274 * 107.74598 * 20 19 2 43 43 H 0.97004 * 120.00050 * 179.97438 * 25 24 22 44 44 H 1.09001 * 113.76520 * 221.05803 * 30 21 20 45 45 H 1.08992 * 113.87337 * 89.67515 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0183 2.3572 6 8 1.8582 1.1613 2.4118 7 6 2.6399 -0.7146 3.5631 8 6 2.7739 -0.0180 4.7668 9 6 3.2329 -0.6681 5.8901 10 6 3.5646 -2.0215 5.8269 11 6 4.0594 -2.7205 7.0375 12 7 4.2312 -2.1650 8.2449 13 6 4.6802 -3.0601 9.0838 14 7 4.8099 -4.2274 8.4270 15 1 5.1228 -5.0687 8.7948 16 7 4.3976 -3.9900 7.1056 17 6 3.4307 -2.7182 4.6257 18 6 2.9719 -2.0702 3.5010 19 6 2.0400 -0.7212 -1.2493 20 6 3.4666 -0.3146 -1.6607 21 7 2.9584 -0.3120 -3.0462 22 6 3.5329 -0.4678 -4.2795 23 1 2.9225 -0.4219 -5.1692 24 6 4.8999 -0.6836 -4.3860 25 7 5.6439 -0.7389 -3.3017 26 14 5.6837 -0.8954 -6.0683 27 1 4.6386 -0.7912 -7.1180 28 1 6.7019 0.1652 -6.2772 29 1 6.3341 -2.2282 -6.1472 30 6 1.5824 -0.0739 -2.5688 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2489 -1.6318 1.1526 35 1 2.5218 1.0310 4.8148 36 1 3.3370 -0.1297 6.8205 37 1 4.9090 -2.8918 10.1258 38 1 3.6874 -3.7662 4.5779 39 1 2.8687 -2.6096 2.5711 40 1 1.8828 -1.7992 -1.2115 41 1 3.7640 0.6701 -1.2999 42 1 4.2152 -1.0833 -1.4688 43 1 6.5992 -0.8901 -3.3761 44 1 0.8265 -0.6505 -3.1021 45 1 1.3245 0.9808 -2.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970685339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:19 Heat of formation + Delta-G solvation = 108.762938 kcal Electronic energy + Delta-G solvation = -27904.215995 eV Core-core repulsion = 23924.312716 eV Total energy + Delta-G solvation = -3979.903278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.05744 -41.36692 -40.05739 -39.12624 -36.22486 -34.41276 -34.08419 -32.96510 -32.44074 -31.57273 -30.71101 -29.32412 -26.73087 -25.95326 -25.41948 -24.24603 -23.29814 -22.66584 -21.95611 -21.23055 -20.67876 -19.42712 -18.88056 -18.66041 -17.46958 -16.99163 -16.87654 -16.50333 -16.32471 -16.01296 -15.93180 -15.70273 -15.26394 -15.06172 -14.73142 -14.69210 -14.39520 -14.05856 -13.77714 -13.39452 -13.27528 -13.23288 -13.10457 -13.06417 -12.89874 -12.68862 -12.51766 -12.16807 -11.95458 -11.73306 -11.50958 -11.48277 -11.24093 -11.15892 -11.04218 -10.96553 -10.85558 -10.09067 -10.04835 -9.60219 -8.90820 -7.89832 -5.23395 -0.58200 0.35733 0.71248 1.45270 1.46663 1.56863 1.59566 1.73957 2.11970 2.18072 2.47745 2.90224 2.95768 3.31049 3.39386 3.52493 3.65363 3.81043 3.88626 3.94063 4.00132 4.17906 4.29834 4.32294 4.47007 4.52156 4.61503 4.67452 4.76609 4.84812 4.88694 4.95598 4.99624 5.04160 5.11386 5.12167 5.27183 5.27662 5.36568 5.38585 5.40465 5.49102 5.57705 5.68296 5.76080 5.95099 6.22804 6.56009 6.92935 6.99715 7.21191 7.61842 8.57827 9.27117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002093 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.432770 B =13377.802898 C =14729.650120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.061 0.939 4 N -0.704 5.704 5 C 0.555 3.445 6 O -0.577 6.577 7 C -0.129 4.129 8 C -0.070 4.070 9 C -0.082 4.082 10 C -0.003 4.003 11 C 0.249 3.751 12 N -0.569 5.569 13 C 0.282 3.718 14 N -0.472 5.472 15 H 0.461 0.539 16 N -0.328 5.328 17 C -0.092 4.092 18 C -0.080 4.080 19 C -0.109 4.109 20 C 0.166 3.834 21 N -0.644 5.644 22 C -0.232 4.232 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.979 3.021 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.290 1.290 30 C 0.130 3.870 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.412 0.588 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.278 0.722 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.107 0.893 41 H 0.002 0.998 42 H 0.042 0.958 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 -8.938 27.585 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 H 0.079 0.921 4 N -0.355 5.355 5 C 0.344 3.656 6 O -0.458 6.458 7 C -0.133 4.133 8 C -0.089 4.089 9 C -0.102 4.102 10 C -0.006 4.006 11 C -0.031 4.031 12 N -0.297 5.297 13 C -0.016 4.016 14 N -0.192 5.192 15 H 0.310 0.690 16 N -0.158 5.158 17 C -0.112 4.112 18 C -0.099 4.099 19 C -0.129 4.129 20 C 0.041 3.959 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.103 0.897 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.807 3.193 27 H -0.188 1.188 28 H -0.223 1.223 29 H -0.217 1.217 30 C 0.005 3.995 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.293 0.707 38 H 0.166 0.834 39 H 0.172 0.828 40 H 0.125 0.875 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.373 -8.322 26.853 28.826 hybrid contribution 1.370 -0.637 -0.494 1.589 sum -5.003 -8.959 26.359 28.286 Atomic orbital electron populations 1.22053 0.93139 1.03235 1.02346 1.20882 0.95212 0.95892 0.82673 0.92071 1.45925 1.66103 1.14643 1.08848 1.18535 0.77114 0.86133 0.83832 1.90740 1.52304 1.17082 1.85696 1.20089 1.04240 0.95154 0.93847 1.21266 0.96044 1.00727 0.90846 1.21189 0.96999 0.92932 0.99098 1.17849 0.99912 0.93306 0.89567 1.22346 0.98818 0.88690 0.93243 1.70497 1.24029 1.34557 1.00666 1.27112 0.92592 0.80485 1.01379 1.48108 1.50470 1.14110 1.06505 0.68955 1.78160 1.22481 1.16750 0.98451 1.21235 0.98084 1.01005 0.90828 1.21433 0.96276 0.92606 0.99579 1.23453 0.96216 1.00666 0.92541 1.22160 0.94261 0.96314 0.83210 1.46396 1.05162 1.83439 1.02062 1.19496 0.91563 1.40612 0.84405 0.89670 1.25658 0.96694 1.03147 1.00902 1.70026 1.04860 1.57327 1.28187 0.85000 0.78201 0.76735 0.79340 1.18767 1.22321 1.21693 1.22690 0.87706 0.97751 0.91356 0.90628 0.90585 0.93119 0.75076 0.84312 0.83238 0.70669 0.83435 0.82752 0.87470 0.98017 0.93944 0.94383 0.91564 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.29 71.98 0.67 -3.02 16 2 C 0.16 4.81 2.42 44.99 0.11 4.92 16 3 H 0.06 2.24 7.37 -2.39 -0.02 2.22 16 4 N -0.70 -19.08 5.03 -445.52 -2.24 -21.31 16 5 C 0.56 16.76 7.73 86.75 0.67 17.43 16 6 O -0.58 -21.57 16.00 -3.92 -0.06 -21.63 16 7 C -0.13 -3.24 5.88 -20.06 -0.12 -3.36 16 8 C -0.07 -1.67 9.58 22.49 0.22 -1.46 16 9 C -0.08 -1.76 9.67 22.44 0.22 -1.55 16 10 C 0.00 -0.08 5.88 -19.99 -0.12 -0.19 16 11 C 0.25 5.25 7.77 137.41 1.07 6.32 16 12 N -0.57 -10.12 10.81 -193.13 -2.09 -12.21 16 13 C 0.28 2.21 13.11 180.37 2.36 4.57 16 14 N -0.47 -4.25 7.44 -60.52 -0.45 -4.70 16 15 H 0.46 0.39 8.96 -213.10 -1.91 -1.52 16 16 N -0.33 -6.22 12.42 -52.39 -0.65 -6.87 16 17 C -0.09 -1.84 9.66 22.44 0.22 -1.62 16 18 C -0.08 -1.63 9.52 22.49 0.21 -1.42 16 19 C -0.11 -3.78 3.50 -10.14 -0.04 -3.82 16 20 C 0.17 7.99 7.07 86.48 0.61 8.60 16 21 N -0.64 -33.32 3.70 -716.87 -2.65 -35.97 16 22 C -0.23 -13.20 10.70 84.03 0.90 -12.30 16 23 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 25 N -0.95 -58.81 11.38 21.65 0.25 -58.56 16 26 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 30 C 0.13 5.04 7.56 86.48 0.65 5.69 16 31 H 0.07 1.76 7.43 -2.39 -0.02 1.75 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.41 8.93 6.62 -92.71 -0.61 8.32 16 35 H 0.14 3.34 7.64 -2.91 -0.02 3.32 16 36 H 0.15 2.87 7.82 -2.91 -0.02 2.84 16 37 H 0.28 -1.29 8.06 -2.92 -0.02 -1.32 16 38 H 0.15 2.60 7.82 -2.91 -0.02 2.57 16 39 H 0.15 2.39 6.39 -2.91 -0.02 2.38 16 40 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 41 H 0.00 0.11 7.96 -2.39 -0.02 0.09 16 42 H 0.04 2.27 7.15 -2.39 -0.02 2.25 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 45 H 0.04 1.64 8.06 -2.39 -0.02 1.62 16 Total: -1.00 -84.14 382.46 0.76 -83.38 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -1.47 Total: 14.32 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 8.10 Total: 15.11 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -7.83 Total: -139.62 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -84.14 0.76 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970685339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.140 kcal (2) G-P(sol) polarization free energy of solvation -84.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds