Wall clock time and date at job start Wed Apr 1 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21564 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.47720 * 119.99816 * 179.97438 * 5 4 2 8 8 C 1.39711 * 120.02497 * 359.72162 * 7 5 4 9 9 C 1.37659 * 119.97729 * 179.80987 * 8 7 5 10 10 C 1.39502 * 120.02012 * 0.44508 * 9 8 7 11 11 C 1.48296 * 119.97132 * 179.76373 * 10 9 8 12 12 N 1.34017 * 125.65773 * 0.02562 * 11 10 9 13 13 C 1.30637 * 109.78670 * 179.97438 * 12 11 10 14 14 N 1.34576 * 108.30523 * 0.02562 * 13 12 11 15 15 H 0.97004 * 126.74166 * 180.02562 * 14 13 12 16 16 N 1.31551 * 125.64935 * 179.71267 * 11 10 9 17 17 C 1.39497 * 120.05485 * 359.78578 * 10 9 8 18 18 C 1.37668 * 120.02211 * 0.02562 * 17 10 9 19 19 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 20 20 C 1.53497 * 114.20787 * 299.99699 * 19 2 1 21 21 N 1.47062 * 87.98453 * 87.71861 * 20 19 2 22 22 C 1.36943 * 136.05579 * 207.08745 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27778 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99850 * 26 24 22 28 28 H 1.48499 * 109.47039 * 210.00011 * 26 24 22 29 29 H 1.48501 * 109.47275 * 329.99811 * 26 24 22 30 30 C 1.47067 * 87.88602 * 27.34481 * 21 20 19 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 34 34 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 35 35 H 1.08004 * 120.01138 * 0.02562 * 8 7 5 36 36 H 1.07996 * 119.99614 * 180.20896 * 9 8 7 37 37 H 1.07999 * 125.85154 * 179.97438 * 13 12 11 38 38 H 1.07994 * 119.99109 * 179.97438 * 17 10 9 39 39 H 1.08000 * 120.01241 * 179.97438 * 18 17 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 19 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 20 19 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 20 19 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 44 44 H 1.08994 * 113.46653 * 87.43736 * 30 21 20 45 45 H 1.08996 * 113.46465 * 217.87717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4118 7 6 2.6399 -0.7148 -3.5631 8 6 2.9782 -2.0688 -3.4993 9 6 3.4337 -2.7177 -4.6247 10 6 3.5663 -2.0214 -5.8262 11 6 4.0621 -2.7203 -7.0366 12 7 4.4132 -4.0119 -7.1042 13 6 4.8033 -4.3012 -8.3170 14 7 4.7115 -3.1879 -9.0674 15 1 4.9336 -3.1020 -10.0077 16 7 4.2246 -2.1765 -8.2234 17 6 3.2335 -0.6683 -5.8899 18 6 2.7741 -0.0183 -4.7667 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3766 -0.9126 2.4972 22 6 -0.9105 -0.8194 2.9554 23 1 -1.2182 0.0423 3.5293 24 6 -1.8178 -1.8352 2.6877 25 7 -1.4426 -2.8854 1.9887 26 14 -3.5714 -1.7116 3.3194 27 1 -4.4155 -1.0288 2.3062 28 1 -4.1043 -3.0748 3.5703 29 1 -3.5883 -0.9331 4.5838 30 6 1.1558 -1.8880 1.7197 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2489 -1.6319 -1.1525 35 1 2.8791 -2.6071 -2.5682 36 1 3.6921 -3.7652 -4.5765 37 1 5.1422 -5.2680 -8.6587 38 1 3.3369 -0.1302 -6.8205 39 1 2.5168 1.0295 -4.8161 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970685340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:23 Heat of formation + Delta-G solvation = 146.551919 kcal Electronic energy + Delta-G solvation = -28350.443445 eV Core-core repulsion = 24372.178820 eV Total energy + Delta-G solvation = -3978.264625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46507 -40.19428 -38.97711 -37.93050 -34.45458 -33.55401 -32.37849 -32.10389 -31.11460 -30.68693 -29.12316 -27.63622 -25.07355 -24.67186 -24.02862 -23.45633 -22.19817 -21.75824 -20.91004 -19.95469 -18.93499 -18.79590 -17.41838 -16.73966 -16.35770 -15.88977 -15.74937 -15.33958 -15.07687 -14.88158 -14.64904 -14.43876 -14.27982 -13.77600 -13.67953 -13.33939 -12.89835 -12.62859 -12.58005 -12.35900 -12.14379 -11.73770 -11.29578 -11.17212 -11.02246 -10.93434 -10.83019 -10.74577 -10.54316 -10.51060 -10.39185 -10.28641 -9.88659 -9.71466 -9.63752 -9.17421 -9.14040 -8.84283 -8.72483 -8.54746 -6.80492 -5.75574 -3.06661 0.31866 1.23200 1.31294 2.17525 2.42001 3.15575 3.40805 3.41694 3.46402 3.47435 3.55095 3.87514 4.15287 4.47263 4.47976 4.72919 4.78231 4.88127 5.16660 5.29226 5.33557 5.35967 5.41368 5.48877 5.58821 5.68589 5.76909 5.87830 5.99274 6.11166 6.17775 6.19749 6.26093 6.35679 6.47269 6.52102 6.55687 6.63836 6.66744 6.75590 6.83708 7.08863 7.25778 7.29918 7.52531 7.58006 7.65220 7.84888 7.99295 8.47736 9.05811 9.72442 10.66275 11.41689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002122 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.502333 B =13191.544093 C =13744.797210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.077 0.923 4 N -0.710 5.710 5 C 0.553 3.447 6 O -0.541 6.541 7 C -0.109 4.109 8 C -0.090 4.090 9 C -0.081 4.081 10 C -0.003 4.003 11 C 0.271 3.729 12 N -0.532 5.532 13 C 0.266 3.734 14 N -0.485 5.485 15 H 0.443 0.557 16 N -0.303 5.303 17 C -0.092 4.092 18 C -0.066 4.066 19 C -0.162 4.162 20 C 0.127 3.873 21 N -0.604 5.604 22 C -0.212 4.212 23 H 0.079 0.921 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.157 3.843 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.398 0.602 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.226 0.774 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.446 -2.888 -21.220 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.095 0.905 4 N -0.360 5.360 5 C 0.340 3.660 6 O -0.420 6.420 7 C -0.113 4.113 8 C -0.109 4.109 9 C -0.101 4.101 10 C -0.006 4.006 11 C -0.009 4.009 12 N -0.260 5.260 13 C -0.033 4.033 14 N -0.203 5.203 15 H 0.289 0.711 16 N -0.132 5.132 17 C -0.112 4.112 18 C -0.085 4.085 19 C -0.182 4.182 20 C 0.000 4.000 21 N -0.330 5.330 22 C -0.340 4.340 23 H 0.097 0.903 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.738 3.262 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.031 3.969 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.242 0.758 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.700 -1.659 -21.029 25.711 hybrid contribution -0.517 -0.947 -0.331 1.128 sum 14.183 -2.606 -21.360 25.772 Atomic orbital electron populations 1.22170 0.92940 1.04379 1.01075 1.20603 0.95711 0.95179 0.81271 0.90467 1.46113 1.66007 1.14059 1.09858 1.18166 0.78143 0.86602 0.83131 1.90759 1.50643 1.15616 1.84934 1.20269 1.01916 0.94393 0.94766 1.21331 0.97237 0.93373 0.98929 1.21119 0.97520 1.00677 0.90744 1.17606 1.00947 0.92797 0.89236 1.22362 0.97579 0.88723 0.92208 1.70537 1.20942 1.14501 1.20005 1.26144 0.96170 0.94091 0.86941 1.48153 1.51005 1.07655 1.13515 0.71080 1.78264 1.21592 1.11467 1.01900 1.21122 0.98103 0.92941 0.99061 1.21187 0.95935 1.00772 0.90635 1.23381 0.98394 1.01598 0.94803 1.22339 0.88966 0.95743 0.92983 1.45651 1.04236 1.20051 1.63072 1.18858 0.83185 1.03621 1.28302 0.90295 1.24718 0.98049 0.96529 1.00887 1.69794 1.34000 1.09497 1.43230 0.86189 0.84822 0.76734 0.78446 1.21541 1.21770 1.20805 1.22212 0.89398 0.90671 0.94573 0.95338 0.90444 0.89582 0.76683 0.84602 0.84045 0.75793 0.84671 0.84014 0.91210 0.94022 0.94773 0.93752 0.95949 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.07 37.16 0.30 -2.81 16 2 C 0.18 3.14 2.76 -67.93 -0.19 2.95 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.71 -10.97 5.03 -54.79 -0.28 -11.25 16 5 C 0.55 8.90 7.73 -12.39 -0.10 8.80 16 6 O -0.54 -10.47 16.00 5.31 0.08 -10.39 16 7 C -0.11 -1.44 5.88 -104.92 -0.62 -2.06 16 8 C -0.09 -1.00 9.52 -39.24 -0.37 -1.37 16 9 C -0.08 -0.87 9.67 -39.32 -0.38 -1.25 16 10 C 0.00 -0.03 5.88 -104.82 -0.62 -0.65 16 11 C 0.27 3.03 7.77 -156.59 -1.22 1.81 16 12 N -0.53 -5.27 10.81 -12.39 -0.13 -5.40 16 13 C 0.27 1.46 13.11 -90.69 -1.19 0.27 16 14 N -0.48 -2.78 7.44 29.52 0.22 -2.56 16 15 H 0.44 0.76 8.96 -182.34 -1.63 -0.87 16 16 N -0.30 -3.09 12.42 32.09 0.40 -2.69 16 17 C -0.09 -1.02 9.66 -39.32 -0.38 -1.40 16 18 C -0.07 -0.81 9.58 -39.24 -0.38 -1.19 16 19 C -0.16 -2.87 4.24 -89.97 -0.38 -3.25 16 20 C 0.13 2.50 7.85 -8.51 -0.07 2.43 16 21 N -0.60 -14.56 2.18 -184.61 -0.40 -14.96 16 22 C -0.21 -5.69 9.60 -15.06 -0.14 -5.84 16 23 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 25 N -0.92 -26.07 11.50 55.49 0.64 -25.43 16 26 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C 0.16 3.43 6.41 -8.37 -0.05 3.38 16 31 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 1.83 6.33 -51.93 -0.33 1.50 16 33 H 0.09 1.98 5.95 -51.93 -0.31 1.67 16 34 H 0.40 5.25 6.62 -40.82 -0.27 4.98 16 35 H 0.14 1.26 6.39 -52.48 -0.34 0.93 16 36 H 0.14 1.37 7.82 -52.49 -0.41 0.96 16 37 H 0.23 0.03 8.06 -52.49 -0.42 -0.40 16 38 H 0.14 1.33 7.82 -52.49 -0.41 0.92 16 39 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 1.83 5.72 -51.93 -0.30 1.54 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -35.12 375.18 -11.59 -46.70 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.87 Total: 3.87 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -5.87 Total: -0.41 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.44 Total: -62.29 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.12 -11.59 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970685340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.253 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds