Wall clock time and date at job start Wed Apr 1 2020 00:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21564 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.47720 * 119.99816 * 179.97438 * 5 4 2 8 8 C 1.39711 * 120.02497 * 359.72162 * 7 5 4 9 9 C 1.37659 * 119.97729 * 179.80987 * 8 7 5 10 10 C 1.39502 * 120.02012 * 0.44508 * 9 8 7 11 11 C 1.48296 * 119.97132 * 179.76373 * 10 9 8 12 12 N 1.34017 * 125.65773 * 0.02562 * 11 10 9 13 13 C 1.30637 * 109.78670 * 179.97438 * 12 11 10 14 14 N 1.34576 * 108.30523 * 0.02562 * 13 12 11 15 15 H 0.97004 * 126.74166 * 180.02562 * 14 13 12 16 16 N 1.31551 * 125.64935 * 179.71267 * 11 10 9 17 17 C 1.39497 * 120.05485 * 359.78578 * 10 9 8 18 18 C 1.37668 * 120.02211 * 0.02562 * 17 10 9 19 19 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 20 20 C 1.53497 * 114.20787 * 299.99699 * 19 2 1 21 21 N 1.47062 * 87.98453 * 87.71861 * 20 19 2 22 22 C 1.36943 * 136.05579 * 207.08745 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27778 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99850 * 26 24 22 28 28 H 1.48499 * 109.47039 * 210.00011 * 26 24 22 29 29 H 1.48501 * 109.47275 * 329.99811 * 26 24 22 30 30 C 1.47067 * 87.88602 * 27.34481 * 21 20 19 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 34 34 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 35 35 H 1.08004 * 120.01138 * 0.02562 * 8 7 5 36 36 H 1.07996 * 119.99614 * 180.20896 * 9 8 7 37 37 H 1.07999 * 125.85154 * 179.97438 * 13 12 11 38 38 H 1.07994 * 119.99109 * 179.97438 * 17 10 9 39 39 H 1.08000 * 120.01241 * 179.97438 * 18 17 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 19 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 20 19 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 20 19 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 44 44 H 1.08994 * 113.46653 * 87.43736 * 30 21 20 45 45 H 1.08996 * 113.46465 * 217.87717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4118 7 6 2.6399 -0.7148 -3.5631 8 6 2.9782 -2.0688 -3.4993 9 6 3.4337 -2.7177 -4.6247 10 6 3.5663 -2.0214 -5.8262 11 6 4.0621 -2.7203 -7.0366 12 7 4.4132 -4.0119 -7.1042 13 6 4.8033 -4.3012 -8.3170 14 7 4.7115 -3.1879 -9.0674 15 1 4.9336 -3.1020 -10.0077 16 7 4.2246 -2.1765 -8.2234 17 6 3.2335 -0.6683 -5.8899 18 6 2.7741 -0.0183 -4.7667 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3766 -0.9126 2.4972 22 6 -0.9105 -0.8194 2.9554 23 1 -1.2182 0.0423 3.5293 24 6 -1.8178 -1.8352 2.6877 25 7 -1.4426 -2.8854 1.9887 26 14 -3.5714 -1.7116 3.3194 27 1 -4.4155 -1.0288 2.3062 28 1 -4.1043 -3.0748 3.5703 29 1 -3.5883 -0.9331 4.5838 30 6 1.1558 -1.8880 1.7197 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2489 -1.6319 -1.1525 35 1 2.8791 -2.6071 -2.5682 36 1 3.6921 -3.7652 -4.5765 37 1 5.1422 -5.2680 -8.6587 38 1 3.3369 -0.1302 -6.8205 39 1 2.5168 1.0295 -4.8161 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970685340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:22 Heat of formation + Delta-G solvation = 125.085419 kcal Electronic energy + Delta-G solvation = -28351.374303 eV Core-core repulsion = 24372.178820 eV Total energy + Delta-G solvation = -3979.195483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.05293 -41.45341 -40.35847 -39.16091 -35.92514 -34.34213 -34.07523 -33.02067 -32.01108 -31.71258 -30.41431 -29.50158 -26.40453 -26.23184 -25.50712 -24.26205 -23.20700 -22.95092 -21.96007 -21.06280 -20.31059 -19.42193 -18.82892 -18.43174 -17.36137 -16.91445 -16.82106 -16.49793 -16.40291 -16.13126 -15.96523 -15.63814 -15.53588 -15.22372 -14.67691 -14.45807 -14.40646 -13.98100 -13.68682 -13.47992 -13.26583 -13.09618 -12.97526 -12.87577 -12.74401 -12.52593 -12.36432 -12.16429 -11.99184 -11.67286 -11.50678 -11.45661 -11.15342 -11.10300 -11.03775 -10.81167 -10.70419 -10.08214 -10.04235 -9.59714 -8.74228 -7.82288 -5.11746 -0.57917 0.36102 0.71690 1.47714 1.48822 1.55745 1.60276 1.74391 2.12923 2.18481 2.52175 2.90696 2.96170 3.39852 3.52419 3.58213 3.69419 3.78013 3.87735 3.97316 4.00617 4.15977 4.29986 4.41985 4.48776 4.58242 4.67502 4.76706 4.89336 4.92116 4.95967 5.01724 5.07394 5.11863 5.14287 5.16482 5.28265 5.33276 5.38679 5.40511 5.54428 5.62451 5.69393 5.76775 5.82610 6.03991 6.23325 6.59487 7.00296 7.01250 7.22468 7.69876 8.71009 9.34520 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002122 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.502333 B =13191.544093 C =13744.797210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.185 3.815 3 H 0.078 0.922 4 N -0.702 5.702 5 C 0.555 3.445 6 O -0.579 6.579 7 C -0.128 4.128 8 C -0.081 4.081 9 C -0.080 4.080 10 C -0.003 4.003 11 C 0.250 3.750 12 N -0.568 5.568 13 C 0.282 3.718 14 N -0.472 5.472 15 H 0.461 0.539 16 N -0.330 5.330 17 C -0.092 4.092 18 C -0.070 4.070 19 C -0.129 4.129 20 C 0.124 3.876 21 N -0.631 5.631 22 C -0.212 4.212 23 H 0.077 0.923 24 C -0.059 4.059 25 N -0.943 5.943 26 Si 0.963 3.037 27 H -0.292 1.292 28 H -0.297 1.297 29 H -0.273 1.273 30 C 0.156 3.844 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.278 0.722 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.245 0.755 44 H 0.019 0.981 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.416 -3.853 -22.514 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 H 0.096 0.904 4 N -0.353 5.353 5 C 0.343 3.657 6 O -0.460 6.460 7 C -0.132 4.132 8 C -0.099 4.099 9 C -0.100 4.100 10 C -0.006 4.006 11 C -0.030 4.030 12 N -0.296 5.296 13 C -0.016 4.016 14 N -0.192 5.192 15 H 0.310 0.690 16 N -0.160 5.160 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.149 4.149 20 C -0.002 4.002 21 N -0.357 5.357 22 C -0.341 4.341 23 H 0.095 0.905 24 C -0.252 4.252 25 N -0.592 5.592 26 Si 0.793 3.207 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.198 1.198 30 C 0.031 3.969 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.293 0.707 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.713 -2.625 -22.346 28.028 hybrid contribution -1.040 -0.679 -0.084 1.245 sum 15.673 -3.305 -22.430 27.563 Atomic orbital electron populations 1.21934 0.95512 1.01889 0.99527 1.20339 0.93397 0.95689 0.82511 0.90358 1.45930 1.65671 1.14616 1.09106 1.18565 0.77181 0.86183 0.83734 1.90735 1.52402 1.17344 1.85532 1.20072 1.04093 0.95285 0.93766 1.21478 0.96131 0.92440 0.99866 1.21251 0.97223 1.01189 0.90353 1.17847 0.99912 0.92910 0.89943 1.22333 0.98801 0.89569 0.92305 1.70502 1.22568 1.14078 1.22447 1.27117 0.93622 0.95293 0.85523 1.48105 1.49981 1.06956 1.14153 0.68957 1.78152 1.22260 1.13406 1.02206 1.21165 0.97938 0.93101 0.98965 1.21208 0.96081 1.00714 0.90854 1.23136 0.99726 0.98497 0.93542 1.22538 0.87383 0.95733 0.94519 1.45912 1.04687 1.21760 1.63360 1.19101 0.84819 1.03124 1.27037 0.90485 1.25357 1.01136 0.96784 1.01950 1.69944 1.34519 1.09995 1.44767 0.85309 0.81156 0.76211 0.78069 1.21905 1.22347 1.19830 1.22185 0.89602 0.91474 0.93684 0.96097 0.93241 0.91800 0.75182 0.82796 0.82816 0.70676 0.83734 0.84446 0.87191 0.93411 0.92910 0.94588 0.96308 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.07 71.98 0.58 -5.02 16 2 C 0.18 6.46 2.76 44.99 0.12 6.59 16 3 H 0.08 2.81 7.58 -2.39 -0.02 2.79 16 4 N -0.70 -21.05 5.03 -445.54 -2.24 -23.29 16 5 C 0.55 17.71 7.73 86.75 0.67 18.38 16 6 O -0.58 -22.65 16.00 -3.92 -0.06 -22.71 16 7 C -0.13 -3.33 5.88 -20.06 -0.12 -3.45 16 8 C -0.08 -1.69 9.52 22.49 0.21 -1.48 16 9 C -0.08 -1.63 9.67 22.44 0.22 -1.41 16 10 C 0.00 -0.07 5.88 -19.99 -0.12 -0.19 16 11 C 0.25 5.27 7.77 137.41 1.07 6.34 16 12 N -0.57 -10.05 10.81 -193.12 -2.09 -12.14 16 13 C 0.28 2.20 13.11 180.37 2.36 4.57 16 14 N -0.47 -4.21 7.44 -60.51 -0.45 -4.66 16 15 H 0.46 0.30 8.96 -213.10 -1.91 -1.61 16 16 N -0.33 -6.27 12.42 -52.39 -0.65 -6.92 16 17 C -0.09 -2.00 9.66 22.44 0.22 -1.78 16 18 C -0.07 -1.71 9.58 22.49 0.22 -1.50 16 19 C -0.13 -4.33 4.24 -10.37 -0.04 -4.38 16 20 C 0.12 4.68 7.85 83.18 0.65 5.33 16 21 N -0.63 -30.33 2.18 -737.98 -1.61 -31.94 16 22 C -0.21 -11.48 9.60 84.03 0.81 -10.68 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 24 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16 25 N -0.94 -54.75 11.50 21.65 0.25 -54.50 16 26 Si 0.96 45.75 29.55 68.60 2.03 47.78 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 30 C 0.16 6.75 6.41 83.27 0.53 7.28 16 31 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.05 2.40 6.33 -2.39 -0.02 2.38 16 33 H 0.06 3.00 5.95 -2.39 -0.01 2.99 16 34 H 0.41 10.21 6.62 -92.71 -0.61 9.59 16 35 H 0.15 2.56 6.39 -2.91 -0.02 2.54 16 36 H 0.15 2.73 7.82 -2.91 -0.02 2.70 16 37 H 0.28 -1.27 8.06 -2.91 -0.02 -1.29 16 38 H 0.14 2.80 7.82 -2.91 -0.02 2.78 16 39 H 0.14 3.42 7.64 -2.91 -0.02 3.40 16 40 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.05 1.75 8.12 -2.39 -0.02 1.73 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 2.54 5.72 -2.39 -0.01 2.52 16 Total: -1.00 -78.27 375.18 1.56 -76.71 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -1.46 Total: 15.87 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 7.85 Total: 15.81 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -6.79 Total: -133.45 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -78.27 1.56 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970685340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.794 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds