Wall clock time and date at job start Wed Apr 1 2020 00:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21571 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.47680 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.39700 * 120.07739 * 359.72902 * 7 5 4 9 9 C 1.37744 * 119.91531 * 179.71995 * 8 7 5 10 10 C 1.39033 * 120.08045 * 0.54711 * 9 8 7 11 11 N 1.39935 * 119.91683 * 179.69954 * 10 9 8 12 12 C 1.36311 * 126.86900 * 0.02691 * 11 10 9 13 13 C 1.34962 * 106.77973 * 180.02562 * 12 11 10 14 14 N 1.33378 * 109.01358 * 359.97438 * 13 12 11 15 15 N 1.28764 * 109.92711 * 359.70814 * 14 13 12 16 16 C 1.39024 * 120.15928 * 359.72493 * 10 9 8 17 17 C 1.37739 * 120.08088 * 359.97438 * 16 10 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.08003 * 119.99220 * 7.55219 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 31 31 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 32 32 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.07993 * 120.04093 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.95790 * 180.29523 * 9 8 7 36 36 H 1.08004 * 126.61222 * 359.95901 * 12 11 10 37 37 H 1.08001 * 125.49138 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.96001 * 180.02562 * 16 10 9 39 39 H 1.07997 * 120.03997 * 179.97438 * 17 16 10 40 40 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 41 41 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 42 42 H 1.09004 * 113.52153 * 202.31032 * 19 18 2 43 43 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 44 44 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 45 45 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6388 -0.7147 3.5631 8 6 2.9656 -2.0716 3.5037 9 6 3.4294 -2.7164 4.6291 10 6 3.5616 -2.0212 5.8258 11 7 4.0272 -2.6811 6.9686 12 6 4.3889 -3.9918 7.0658 13 6 4.7719 -4.1965 8.3436 14 7 4.6543 -3.0536 9.0210 15 7 4.2211 -2.1244 8.2419 16 6 3.2320 -0.6721 5.8900 17 6 2.7734 -0.0193 4.7672 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4180 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8586 -2.6133 2.5756 35 1 3.6868 -3.7642 4.5827 36 1 4.3712 -4.7254 6.2733 37 1 5.1180 -5.1347 8.7518 38 1 3.3363 -0.1351 6.8212 39 1 2.5171 1.0286 4.8179 40 1 1.9117 -1.8029 -1.2076 41 1 0.6466 0.4562 -2.4938 42 1 1.6122 -0.7736 -3.4158 43 1 4.1374 4.1310 -3.9035 44 1 3.9431 -1.0113 -2.3358 45 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970729574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:25 Heat of formation + Delta-G solvation = 164.458230 kcal Electronic energy + Delta-G solvation = -28537.599477 eV Core-core repulsion = 24560.111327 eV Total energy + Delta-G solvation = -3977.488149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67043 -40.55775 -39.35552 -38.34684 -34.98705 -34.89873 -32.51109 -32.01838 -31.09620 -30.99377 -29.63487 -27.85584 -25.74165 -25.15710 -23.98807 -23.74917 -22.48786 -21.70690 -21.39666 -20.49096 -19.39947 -19.01856 -17.78627 -17.36905 -16.57047 -16.33041 -15.82821 -15.65267 -15.38631 -15.09846 -14.92624 -14.75970 -14.36001 -14.13396 -13.95712 -13.63364 -13.48685 -13.26975 -13.18221 -13.02397 -12.39129 -12.31391 -12.06198 -11.71387 -11.55931 -11.51734 -11.50206 -11.31402 -11.01902 -10.65204 -10.34122 -10.27871 -9.92981 -9.92853 -9.65684 -9.25790 -9.14151 -9.06040 -8.90967 -8.84789 -7.16844 -6.28061 -3.22506 -0.18429 0.74290 1.15938 1.60001 2.05908 2.63501 3.04981 3.38425 3.43805 3.46974 3.63669 3.83566 3.92978 4.22011 4.33363 4.44307 4.52905 4.59998 4.66317 4.71856 4.72830 4.87457 4.94198 5.01998 5.05592 5.36662 5.43364 5.47335 5.54688 5.57756 5.62630 5.73658 5.79170 5.86629 5.87042 5.98484 6.01410 6.15738 6.22149 6.25839 6.34455 6.36976 6.45728 6.56487 6.84488 7.11192 7.48328 7.62676 8.18422 8.24956 8.98478 9.50831 10.36320 11.21813 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002427 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.379571 B =11534.660996 C =12127.985354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.105 0.895 4 N -0.715 5.715 5 C 0.554 3.446 6 O -0.525 6.525 7 C -0.123 4.123 8 C -0.063 4.063 9 C -0.133 4.133 10 C 0.156 3.844 11 N -0.319 5.319 12 C 0.023 3.977 13 C -0.072 4.072 14 N -0.231 5.231 15 N -0.060 5.060 16 C -0.114 4.114 17 C -0.037 4.037 18 C -0.142 4.142 19 C 0.130 3.870 20 N -0.626 5.626 21 C -0.303 4.303 22 H 0.083 0.917 23 C -0.024 4.024 24 N -0.934 5.934 25 Si 1.069 2.931 26 H -0.295 1.295 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.099 3.901 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.395 0.605 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.197 0.803 37 H 0.192 0.808 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 -21.336 18.170 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.123 0.877 4 N -0.366 5.366 5 C 0.340 3.660 6 O -0.401 6.401 7 C -0.126 4.126 8 C -0.082 4.082 9 C -0.154 4.154 10 C 0.063 3.937 11 N -0.100 5.100 12 C -0.126 4.126 13 C -0.227 4.227 14 N -0.101 5.101 15 N -0.038 5.038 16 C -0.134 4.134 17 C -0.056 4.056 18 C -0.162 4.162 19 C 0.003 3.997 20 N -0.355 5.355 21 C -0.429 4.429 22 H 0.101 0.899 23 C -0.223 4.223 24 N -0.576 5.576 25 Si 0.902 3.098 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.215 1.215 29 C -0.026 4.026 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.214 0.786 37 H 0.209 0.791 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.733 -18.954 19.551 27.485 hybrid contribution -1.291 -1.612 -1.491 2.547 sum -5.024 -20.566 18.060 27.827 Atomic orbital electron populations 1.22110 0.95202 1.01504 1.02687 1.20704 0.93536 0.98258 0.81310 0.87694 1.46017 1.67040 1.13754 1.09835 1.18077 0.78276 0.86649 0.83013 1.90835 1.49437 1.15108 1.84737 1.20250 1.03153 0.94254 0.94991 1.21173 0.95618 0.93336 0.98116 1.20761 1.03239 1.00667 0.90763 1.17762 0.99669 0.92684 0.83596 1.48051 1.44217 1.08017 1.09743 1.23614 1.01281 0.86872 1.00877 1.23303 1.09320 0.99082 0.90994 1.74373 1.10547 0.99411 1.25745 1.82175 1.19834 1.17437 0.84315 1.20937 1.00103 0.91913 1.00423 1.21272 0.93390 1.01099 0.89878 1.23211 0.99560 0.98195 0.95255 1.22357 0.92773 0.91906 0.92620 1.46029 1.13187 1.12612 1.63684 1.20135 0.96387 0.88572 1.37782 0.89940 1.25671 0.96090 0.99167 1.01375 1.70907 1.37607 1.15071 1.34051 0.83738 0.76003 0.74505 0.75595 1.22277 1.22101 1.21548 1.22824 0.93995 0.91303 0.94501 0.92422 0.91020 0.92879 0.77034 0.84074 0.84317 0.78569 0.79144 0.83498 0.83049 0.90459 0.93193 0.94216 0.92921 0.93705 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.29 37.16 0.35 -1.73 16 2 C 0.17 2.54 2.43 -67.93 -0.16 2.38 16 3 H 0.11 2.16 7.36 -51.93 -0.38 1.78 16 4 N -0.72 -8.91 5.03 -54.80 -0.28 -9.18 16 5 C 0.55 7.80 7.73 -12.40 -0.10 7.70 16 6 O -0.52 -9.70 16.00 5.30 0.08 -9.61 16 7 C -0.12 -1.30 5.88 -104.95 -0.62 -1.92 16 8 C -0.06 -0.46 9.53 -39.22 -0.37 -0.83 16 9 C -0.13 -0.85 9.46 -39.47 -0.37 -1.22 16 10 C 0.16 1.33 6.70 -83.57 -0.56 0.77 16 11 N -0.32 -2.86 3.85 -10.50 -0.04 -2.90 16 12 C 0.02 0.14 10.92 -16.72 -0.18 -0.05 16 13 C -0.07 -0.49 11.86 -18.04 -0.21 -0.71 16 14 N -0.23 -2.49 12.33 30.09 0.37 -2.12 16 15 N -0.06 -0.69 13.15 60.35 0.79 0.11 16 16 C -0.11 -1.07 9.66 -39.47 -0.38 -1.45 16 17 C -0.04 -0.38 9.58 -39.22 -0.38 -0.76 16 18 C -0.14 -2.17 3.73 -89.97 -0.34 -2.51 16 19 C 0.13 2.37 8.08 -8.52 -0.07 2.31 16 20 N -0.63 -14.96 3.49 -184.63 -0.64 -15.60 16 21 C -0.30 -8.70 11.08 -15.06 -0.17 -8.87 16 22 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 23 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 24 N -0.93 -29.89 13.70 55.49 0.76 -29.13 16 25 Si 1.07 27.17 25.16 -169.99 -4.28 22.90 16 26 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.29 -7.20 6.51 56.52 0.37 -6.83 16 28 H -0.29 -6.71 6.20 56.52 0.35 -6.36 16 29 C 0.10 1.99 5.24 -8.38 -0.04 1.94 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.39 3.40 6.63 -40.82 -0.27 3.13 16 34 H 0.14 0.63 6.39 -52.49 -0.34 0.30 16 35 H 0.14 0.42 6.82 -52.49 -0.36 0.06 16 36 H 0.20 0.26 7.16 -52.48 -0.38 -0.12 16 37 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.15 1.32 7.72 -52.49 -0.41 0.91 16 39 H 0.15 1.61 7.64 -52.49 -0.40 1.20 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.88 6.43 -51.93 -0.33 0.55 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 44 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 45 H 0.05 1.13 4.71 -51.93 -0.24 0.89 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -38.02 371.63 -6.95 -44.97 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.62 Total: 0.72 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.70 Total: -5.75 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.96 Total: -58.82 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.28 Total: 22.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.02 -6.95 -44.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970729574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.424 kcal (2) G-P(sol) polarization free energy of solvation -38.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds