Wall clock time and date at job start Wed Apr 1 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21571 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.47680 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.39700 * 120.07739 * 359.72902 * 7 5 4 9 9 C 1.37744 * 119.91531 * 179.71995 * 8 7 5 10 10 C 1.39033 * 120.08045 * 0.54711 * 9 8 7 11 11 N 1.39935 * 119.91683 * 179.69954 * 10 9 8 12 12 C 1.36311 * 126.86900 * 0.02691 * 11 10 9 13 13 C 1.34962 * 106.77973 * 180.02562 * 12 11 10 14 14 N 1.33378 * 109.01358 * 359.97438 * 13 12 11 15 15 N 1.28764 * 109.92711 * 359.70814 * 14 13 12 16 16 C 1.39024 * 120.15928 * 359.72493 * 10 9 8 17 17 C 1.37739 * 120.08088 * 359.97438 * 16 10 9 18 18 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 19 19 C 1.53486 * 114.20850 * 60.00280 * 18 2 1 20 20 N 1.47064 * 87.98715 * 87.51930 * 19 18 2 21 21 C 1.36944 * 136.05968 * 207.08932 * 20 19 18 22 22 H 1.08003 * 119.99220 * 7.55219 * 21 20 19 23 23 C 1.38804 * 120.00270 * 187.55676 * 21 20 19 24 24 N 1.31616 * 120.00491 * 174.37770 * 23 21 20 25 25 Si 1.86810 * 119.99801 * 354.37977 * 23 21 20 26 26 H 1.48499 * 109.46858 * 174.95062 * 25 23 21 27 27 H 1.48498 * 109.46907 * 294.94544 * 25 23 21 28 28 H 1.48495 * 109.47036 * 54.94600 * 25 23 21 29 29 C 1.47066 * 87.88390 * 27.34185 * 20 19 18 30 30 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 31 31 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 32 32 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 34 34 H 1.07993 * 120.04093 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.95790 * 180.29523 * 9 8 7 36 36 H 1.08004 * 126.61222 * 359.95901 * 12 11 10 37 37 H 1.08001 * 125.49138 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.96001 * 180.02562 * 16 10 9 39 39 H 1.07997 * 120.03997 * 179.97438 * 17 16 10 40 40 H 1.08998 * 113.41116 * 286.79710 * 18 2 1 41 41 H 1.09003 * 113.46770 * 332.73878 * 19 18 2 42 42 H 1.09004 * 113.52153 * 202.31032 * 19 18 2 43 43 H 0.97003 * 119.99848 * 354.81683 * 24 23 21 44 44 H 1.08996 * 113.46631 * 87.44126 * 29 20 19 45 45 H 1.09001 * 113.46561 * 217.88042 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8584 1.1614 2.4116 7 6 2.6388 -0.7147 3.5631 8 6 2.9656 -2.0716 3.5037 9 6 3.4294 -2.7164 4.6291 10 6 3.5616 -2.0212 5.8258 11 7 4.0272 -2.6811 6.9686 12 6 4.3889 -3.9918 7.0658 13 6 4.7719 -4.1965 8.3436 14 7 4.6543 -3.0536 9.0210 15 7 4.2211 -2.1244 8.2419 16 6 3.2320 -0.6721 5.8900 17 6 2.7734 -0.0193 4.7672 18 6 2.0399 -0.7213 -1.2493 19 6 1.5898 -0.0846 -2.5714 20 7 2.7723 0.7864 -2.4946 21 6 3.1105 2.0324 -2.9511 22 1 2.3637 2.6574 -3.4180 23 6 4.4131 2.4918 -2.8140 24 7 4.7655 3.6412 -3.3498 25 14 5.6662 1.4788 -1.8688 26 1 7.0008 2.1220 -1.9706 27 1 5.2629 1.3987 -0.4418 28 1 5.7308 0.1107 -2.4425 29 6 3.4340 -0.2723 -1.7172 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 2.8586 -2.6133 2.5756 35 1 3.6868 -3.7642 4.5827 36 1 4.3712 -4.7254 6.2733 37 1 5.1180 -5.1347 8.7518 38 1 3.3363 -0.1351 6.8212 39 1 2.5171 1.0286 4.8179 40 1 1.9117 -1.8029 -1.2076 41 1 0.6466 0.4562 -2.4938 42 1 1.6122 -0.7736 -3.4158 43 1 4.1374 4.1310 -3.9035 44 1 3.9431 -1.0113 -2.3358 45 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970729574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:24 Heat of formation + Delta-G solvation = 135.162608 kcal Electronic energy + Delta-G solvation = -28538.869830 eV Core-core repulsion = 24560.111327 eV Total energy + Delta-G solvation = -3978.758503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.23767 -41.55235 -40.50926 -39.45363 -36.28243 -35.58293 -34.54041 -32.82899 -31.98379 -31.64945 -30.52326 -29.58461 -27.08121 -26.12789 -25.21281 -24.50505 -23.58461 -22.76305 -22.18297 -21.49560 -20.75406 -19.73016 -19.47308 -18.64338 -17.72006 -17.04359 -16.92575 -16.59588 -16.30383 -16.04537 -15.95738 -15.84390 -15.42842 -15.26494 -15.15232 -14.81592 -14.64286 -14.51474 -14.13614 -13.86121 -13.64305 -13.38048 -13.13701 -12.96264 -12.81677 -12.68502 -12.30124 -12.26199 -12.17779 -12.13325 -12.04942 -11.67395 -11.31746 -11.09584 -11.04003 -10.84754 -10.46585 -10.26449 -10.18458 -9.59447 -9.18345 -8.60816 -5.45086 -0.83915 0.14321 0.52108 1.06611 1.31710 1.44834 1.54350 1.62879 1.77485 2.03252 2.53018 2.68036 3.05298 3.21975 3.27502 3.41699 3.53413 3.65035 3.70823 3.79256 3.85591 4.04068 4.14310 4.23577 4.34981 4.38051 4.40134 4.48769 4.56122 4.63594 4.70417 4.75298 4.79608 4.80903 4.88398 4.88509 5.04348 5.09982 5.15743 5.22142 5.25873 5.28979 5.36284 5.40283 5.59557 5.79126 5.96869 6.53435 6.71735 7.05272 7.21173 7.35030 8.30167 8.91080 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.002427 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.379571 B =11534.660996 C =12127.985354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 H 0.041 0.959 4 N -0.698 5.698 5 C 0.550 3.450 6 O -0.585 6.585 7 C -0.141 4.141 8 C -0.046 4.046 9 C -0.114 4.114 10 C 0.152 3.848 11 N -0.326 5.326 12 C 0.044 3.956 13 C -0.081 4.081 14 N -0.265 5.265 15 N -0.116 5.116 16 C -0.126 4.126 17 C -0.051 4.051 18 C -0.105 4.105 19 C 0.124 3.876 20 N -0.666 5.666 21 C -0.281 4.281 22 H 0.046 0.954 23 C -0.093 4.093 24 N -0.977 5.977 25 Si 1.111 2.889 26 H -0.309 1.309 27 H -0.288 1.288 28 H -0.246 1.246 29 C 0.088 3.912 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.419 0.581 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.252 0.748 37 H 0.225 0.775 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.069 0.931 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -28.418 18.363 34.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.060 0.940 4 N -0.351 5.351 5 C 0.338 3.662 6 O -0.466 6.466 7 C -0.145 4.145 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.059 3.941 11 N -0.108 5.108 12 C -0.105 4.105 13 C -0.237 4.237 14 N -0.134 5.134 15 N -0.092 5.092 16 C -0.146 4.146 17 C -0.071 4.071 18 C -0.124 4.124 19 C -0.001 4.001 20 N -0.395 5.395 21 C -0.409 4.409 22 H 0.064 0.936 23 C -0.284 4.284 24 N -0.623 5.623 25 Si 0.938 3.062 26 H -0.238 1.238 27 H -0.216 1.216 28 H -0.170 1.170 29 C -0.037 4.037 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.259 0.741 34 H 0.199 0.801 35 H 0.207 0.793 36 H 0.268 0.732 37 H 0.241 0.759 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.796 -26.125 19.759 32.975 hybrid contribution -1.411 0.495 -1.517 2.130 sum -5.207 -25.630 18.242 31.887 Atomic orbital electron populations 1.22023 0.93415 1.03697 1.01504 1.20431 0.94880 0.95581 0.82867 0.94038 1.45740 1.66321 1.14672 1.08321 1.18649 0.77246 0.86087 0.84213 1.90811 1.52105 1.17942 1.85716 1.20038 1.05364 0.95994 0.93090 1.21549 0.93510 0.91407 0.99999 1.21241 1.00884 1.02561 0.88736 1.18017 0.99166 0.92356 0.84551 1.48185 1.44243 1.09228 1.09158 1.24564 0.98198 0.86024 1.01756 1.24044 1.08901 0.99190 0.91524 1.74341 1.11195 1.00911 1.26907 1.82180 1.22714 1.18573 0.85772 1.20837 1.01017 0.93094 0.99659 1.21126 0.94625 1.00552 0.90808 1.23012 0.95106 1.01362 0.92943 1.22675 0.90811 0.91326 0.95272 1.46157 1.16487 1.12398 1.64458 1.19975 0.95225 0.90850 1.34864 0.93600 1.27037 0.98780 0.99773 1.02836 1.71009 1.37790 1.16924 1.36597 0.83244 0.72917 0.75171 0.74849 1.23787 1.21569 1.17002 1.23127 0.96415 0.90240 0.93869 0.94042 0.91951 0.88797 0.74145 0.80135 0.79332 0.73207 0.75853 0.84529 0.85185 0.83900 0.93302 0.91515 0.94660 0.91387 0.94552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.29 71.98 0.67 -2.92 16 2 C 0.17 4.79 2.43 44.99 0.11 4.90 16 3 H 0.04 1.76 7.36 -2.39 -0.02 1.74 16 4 N -0.70 -15.12 5.03 -445.55 -2.24 -17.36 16 5 C 0.55 15.14 7.73 86.74 0.67 15.81 16 6 O -0.58 -22.95 16.00 -3.94 -0.06 -23.01 16 7 C -0.14 -2.77 5.88 -20.08 -0.12 -2.89 16 8 C -0.05 -0.42 9.53 22.51 0.21 -0.21 16 9 C -0.11 -0.79 9.46 22.34 0.21 -0.58 16 10 C 0.15 2.20 6.70 38.23 0.26 2.45 16 11 N -0.33 -5.01 3.85 -187.13 -0.72 -5.73 16 12 C 0.04 0.30 10.92 83.24 0.91 1.21 16 13 C -0.08 -0.85 11.86 83.70 0.99 0.15 16 14 N -0.27 -5.52 12.33 -58.72 -0.72 -6.24 16 15 N -0.12 -2.65 13.15 37.02 0.49 -2.16 16 16 C -0.13 -2.40 9.66 22.34 0.22 -2.18 16 17 C -0.05 -1.12 9.58 22.50 0.22 -0.90 16 18 C -0.10 -2.69 3.73 -10.37 -0.04 -2.73 16 19 C 0.12 4.13 8.08 83.17 0.67 4.81 16 20 N -0.67 -31.13 3.49 -738.03 -2.58 -33.71 16 21 C -0.28 -16.70 11.08 84.03 0.93 -15.77 16 22 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 23 C -0.09 -5.79 5.50 84.86 0.47 -5.32 16 24 N -0.98 -65.74 13.70 21.65 0.30 -65.45 16 25 Si 1.11 55.40 25.16 68.60 1.73 57.12 16 26 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 27 H -0.29 -13.89 6.51 99.48 0.65 -13.25 16 28 H -0.25 -10.39 6.20 99.48 0.62 -9.77 16 29 C 0.09 3.18 5.24 83.26 0.44 3.62 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.62 6.50 -2.39 -0.02 1.60 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.42 4.64 6.63 -92.71 -0.61 4.03 16 34 H 0.18 0.20 6.39 -2.91 -0.02 0.18 16 35 H 0.19 -0.56 6.82 -2.91 -0.02 -0.58 16 36 H 0.25 -1.38 7.16 -2.91 -0.02 -1.40 16 37 H 0.22 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.14 2.76 7.72 -2.91 -0.02 2.74 16 39 H 0.13 3.23 7.64 -2.91 -0.02 3.20 16 40 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.63 6.43 -2.39 -0.02 1.62 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.24 16.51 8.73 -92.71 -0.81 15.70 16 44 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 45 H 0.04 1.46 4.71 -2.39 -0.01 1.45 16 Total: -1.00 -96.20 371.63 3.24 -92.97 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.24 Total: 4.12 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 6.81 Total: -0.55 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.48 Total: -130.64 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 55.40 SS G_CDS: 1.73 Total: 57.12 kcal Total: -96.20 3.24 -92.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970729574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.128 kcal (2) G-P(sol) polarization free energy of solvation -96.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds