Wall clock time and date at job start Wed Apr 1 2020 00:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21569 * 120.00402 * 359.97438 * 5 4 2 7 7 C 1.47683 * 119.99528 * 179.97438 * 5 4 2 8 8 C 1.39688 * 120.08439 * 359.72440 * 7 5 4 9 9 C 1.37745 * 119.92100 * 179.72002 * 8 7 5 10 10 C 1.39023 * 120.07961 * 0.55354 * 9 8 7 11 11 N 1.39935 * 119.92126 * 179.69479 * 10 9 8 12 12 C 1.36316 * 126.86685 * 0.02837 * 11 10 9 13 13 C 1.34957 * 106.78045 * 179.97438 * 12 11 10 14 14 N 1.33376 * 109.01759 * 359.97438 * 13 12 11 15 15 N 1.28768 * 109.92458 * 359.71435 * 14 13 12 16 16 C 1.39029 * 120.15886 * 359.72515 * 10 9 8 17 17 C 1.37743 * 120.08014 * 359.97438 * 16 10 9 18 18 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 19 19 C 1.53497 * 114.20787 * 299.99699 * 18 2 1 20 20 N 1.47062 * 87.98453 * 87.71861 * 19 18 2 21 21 C 1.36943 * 136.05579 * 207.08745 * 20 19 18 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99622 * 180.27778 * 21 20 19 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.47067 * 87.88602 * 27.34481 * 20 19 18 30 30 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 31 31 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 33 33 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 34 34 H 1.08007 * 120.04099 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.96087 * 180.29354 * 9 8 7 36 36 H 1.07999 * 126.60923 * 359.96198 * 12 11 10 37 37 H 1.08000 * 125.49530 * 179.97438 * 13 12 11 38 38 H 1.08000 * 119.95692 * 179.97438 * 16 10 9 39 39 H 1.07995 * 120.04109 * 179.97438 * 17 16 10 40 40 H 1.09001 * 113.28445 * 166.93217 * 18 2 1 41 41 H 1.09000 * 113.46436 * 332.93489 * 19 18 2 42 42 H 1.08997 * 113.51966 * 202.51274 * 19 18 2 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08994 * 113.46653 * 87.43736 * 29 20 19 45 45 H 1.08996 * 113.46465 * 217.87717 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1610 -2.4119 7 6 2.6398 -0.7147 -3.5627 8 6 2.9783 -2.0685 -3.5003 9 6 3.4321 -2.7159 -4.6283 10 6 3.5643 -2.0209 -5.8250 11 7 4.0316 -2.6804 -6.9673 12 6 4.3943 -3.9908 -7.0642 13 6 4.7790 -4.1952 -8.3415 14 7 4.6605 -3.0526 -9.0192 15 7 4.2136 -2.1268 -8.2438 16 6 3.2338 -0.6720 -5.8895 17 6 2.7736 -0.0195 -4.7671 18 6 2.0399 -0.7212 1.2493 19 6 1.5897 -0.0845 2.5714 20 7 0.3766 -0.9126 2.4972 21 6 -0.9105 -0.8194 2.9554 22 1 -1.2182 0.0423 3.5293 23 6 -1.8178 -1.8352 2.6877 24 7 -1.4426 -2.8854 1.9887 25 14 -3.5714 -1.7116 3.3194 26 1 -3.7380 -0.4426 4.0725 27 1 -4.5136 -1.7341 2.1718 28 1 -3.8564 -2.8601 4.2166 29 6 1.1558 -1.8880 1.7197 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2489 -1.6319 -1.1525 34 1 2.8805 -2.6079 -2.5698 35 1 3.6895 -3.7638 -4.5819 36 1 4.3772 -4.7241 -6.2715 37 1 5.1269 -5.1328 -8.7493 38 1 3.3382 -0.1351 -6.8207 39 1 2.5174 1.0284 -4.8178 40 1 3.1030 -0.9579 1.2064 41 1 1.3912 0.9843 2.4930 42 1 2.2337 -0.3326 3.4151 43 1 -2.0767 -3.5951 1.8014 44 1 1.6858 -2.6121 2.3384 45 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970729575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:28 Heat of formation + Delta-G solvation = 165.994153 kcal Electronic energy + Delta-G solvation = -28482.682705 eV Core-core repulsion = 24505.261159 eV Total energy + Delta-G solvation = -3977.421547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61457 -40.44671 -39.23940 -38.20983 -34.82792 -34.59603 -32.31730 -31.89518 -31.02577 -30.64576 -29.12943 -27.71919 -25.34260 -24.76342 -24.14878 -23.82177 -22.55570 -21.64781 -21.38562 -20.26337 -19.20437 -18.77627 -17.47836 -16.83384 -16.27573 -16.12003 -15.74007 -15.35606 -15.19339 -14.98360 -14.78793 -14.68326 -14.45654 -14.05944 -13.85599 -13.65024 -13.36511 -13.06063 -12.65966 -12.38700 -12.30664 -11.85248 -11.65315 -11.48688 -11.45890 -11.23312 -11.11581 -11.02341 -10.82482 -10.59953 -10.38283 -9.98254 -9.87332 -9.84526 -9.73797 -9.58023 -9.23847 -8.94687 -8.80151 -8.68121 -6.88222 -5.83144 -3.14199 -0.11414 0.82339 1.22412 1.65902 2.10845 2.72201 3.23020 3.35133 3.41695 3.43161 3.56124 3.90467 3.99896 4.29991 4.41300 4.42615 4.54267 4.62332 4.74390 4.81245 5.01464 5.11687 5.22459 5.24688 5.31999 5.45131 5.49841 5.56087 5.64986 5.81208 5.88935 5.93578 6.03434 6.05428 6.26283 6.36393 6.41089 6.43722 6.57401 6.64483 6.73110 6.98288 7.16491 7.20241 7.44362 7.55426 7.67587 7.69093 7.91773 8.30879 8.98650 9.65238 10.58315 11.34189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002147 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.897226 B =13037.988148 C =13575.994983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.078 0.922 4 N -0.709 5.709 5 C 0.554 3.446 6 O -0.537 6.537 7 C -0.122 4.122 8 C -0.061 4.061 9 C -0.132 4.132 10 C 0.154 3.846 11 N -0.318 5.318 12 C 0.024 3.976 13 C -0.073 4.073 14 N -0.232 5.232 15 N -0.061 5.061 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.162 4.162 19 C 0.127 3.873 20 N -0.604 5.604 21 C -0.212 4.212 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.292 1.292 29 C 0.157 3.843 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.198 0.802 37 H 0.191 0.809 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.879 -3.347 -14.777 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.072 3.928 3 H 0.096 0.904 4 N -0.360 5.360 5 C 0.340 3.660 6 O -0.416 6.416 7 C -0.126 4.126 8 C -0.081 4.081 9 C -0.153 4.153 10 C 0.061 3.939 11 N -0.100 5.100 12 C -0.126 4.126 13 C -0.228 4.228 14 N -0.102 5.102 15 N -0.039 5.039 16 C -0.135 4.135 17 C -0.059 4.059 18 C -0.182 4.182 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.339 4.339 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.219 1.219 29 C 0.032 3.968 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.232 0.768 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.215 0.785 37 H 0.208 0.792 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.210 -1.344 -15.631 20.510 hybrid contribution -0.725 -1.727 1.263 2.259 sum 12.485 -3.071 -14.368 19.281 Atomic orbital electron populations 1.22175 0.92847 1.04409 1.01174 1.20627 0.95772 0.95206 0.81155 0.90370 1.46112 1.65967 1.13989 1.09888 1.18047 0.78310 0.86635 0.83015 1.90782 1.50465 1.15495 1.84820 1.20285 1.02814 0.94341 0.95134 1.21238 0.95175 0.93356 0.98318 1.20782 1.03201 1.00633 0.90709 1.17762 0.99849 0.92674 0.83586 1.48048 1.44184 1.08145 1.09574 1.23631 1.01224 0.86808 1.00900 1.23294 1.09432 0.98991 0.91058 1.74365 1.10445 0.99505 1.25847 1.82156 1.19837 1.17686 0.84245 1.20914 1.00332 0.91954 1.00331 1.21237 0.93634 1.01027 0.89954 1.23385 0.98368 1.01647 0.94820 1.22339 0.88970 0.95787 0.92937 1.45669 1.04261 1.20017 1.63067 1.18918 0.83118 1.03663 1.28234 0.90192 1.24717 0.98104 0.96512 1.00843 1.69800 1.33967 1.09525 1.43280 0.86111 0.84695 0.77282 0.78094 1.20483 1.21721 1.21867 1.22210 0.89393 0.90658 0.94588 0.95307 0.90431 0.89478 0.76779 0.83861 0.84295 0.78528 0.79163 0.83629 0.83204 0.91219 0.93974 0.94724 0.93805 0.95949 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.07 37.16 0.30 -2.66 16 2 C 0.18 2.92 2.76 -67.93 -0.19 2.74 16 3 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -9.81 5.03 -54.81 -0.28 -10.08 16 5 C 0.55 7.95 7.73 -12.40 -0.10 7.85 16 6 O -0.54 -9.61 16.00 5.30 0.08 -9.53 16 7 C -0.12 -1.35 5.87 -104.95 -0.62 -1.96 16 8 C -0.06 -0.51 9.53 -39.22 -0.37 -0.89 16 9 C -0.13 -0.96 9.46 -39.47 -0.37 -1.34 16 10 C 0.15 1.40 6.70 -83.57 -0.56 0.84 16 11 N -0.32 -3.00 3.85 -10.50 -0.04 -3.04 16 12 C 0.02 0.16 10.92 -16.72 -0.18 -0.03 16 13 C -0.07 -0.53 11.86 -18.05 -0.21 -0.75 16 14 N -0.23 -2.57 12.33 30.09 0.37 -2.20 16 15 N -0.06 -0.72 13.15 60.35 0.79 0.07 16 16 C -0.12 -1.10 9.66 -39.47 -0.38 -1.48 16 17 C -0.04 -0.41 9.58 -39.22 -0.38 -0.78 16 18 C -0.16 -2.69 4.24 -89.97 -0.38 -3.08 16 19 C 0.13 2.39 7.85 -8.51 -0.07 2.32 16 20 N -0.60 -14.04 2.18 -184.61 -0.40 -14.45 16 21 C -0.21 -5.53 9.60 -15.06 -0.14 -5.67 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -25.33 11.50 55.49 0.64 -24.69 16 25 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.16 3.27 6.41 -8.37 -0.05 3.22 16 30 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 1.75 6.33 -51.93 -0.33 1.42 16 32 H 0.09 1.92 5.95 -51.93 -0.31 1.61 16 33 H 0.40 4.50 6.63 -40.82 -0.27 4.23 16 34 H 0.14 0.92 6.40 -52.48 -0.34 0.58 16 35 H 0.14 0.58 6.82 -52.49 -0.36 0.22 16 36 H 0.20 0.41 7.16 -52.49 -0.38 0.04 16 37 H 0.19 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.15 1.32 7.72 -52.49 -0.41 0.91 16 39 H 0.15 1.55 7.64 -52.49 -0.40 1.15 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.74 5.72 -51.93 -0.30 1.44 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -33.10 373.49 -7.59 -40.68 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.56 Total: 3.14 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.80 Total: -1.90 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 1.08 Total: -54.39 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.10 -7.59 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970729575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.677 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds